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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ISCU is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
76.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
288.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
228.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
222.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
175.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
169.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
164.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
162.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
159.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
159.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
148.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
141.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
138.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
134.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
131.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
127.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
127.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
125.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
123.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
123.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
123.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
123.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
122.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
122.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
122.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
122.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
121.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
119.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
118.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
115.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
114.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
113.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
112.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
112.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
111.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
111.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
111.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
111.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
110.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
109.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
109.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
107.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
107.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
106.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
106.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
105.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
103.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
102.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
102.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
102.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
102.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
102.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
101.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
101.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
100.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
100.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
99.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
98.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
97.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
97.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
97.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
97.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
97.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
97.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
97.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
97.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
96.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
96.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
95.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
95.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
95.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
94.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
94.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
93.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
93.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
93.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
93.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
93.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
92.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
92.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
91.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
91.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
91.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
91.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
91.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
91.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
91.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
90.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
90.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
89.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
89.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
89.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
89.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
89.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
88.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
88.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
87.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
86.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
86.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
86.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
86.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
86.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
85.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
84.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
84.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
84.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
84.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
84.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
84.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
84.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
84.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
83.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
83.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
83.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
83.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
83.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
83.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
82.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
82.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
82.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
82.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
82.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
82.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
82.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
81.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
81.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
81.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
80.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
80.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
80.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
80.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
80.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
80.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
80.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
79.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
79.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
79.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
79.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
79.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
79.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
79.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
78.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
78.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
78.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
78.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
78.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
78.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
78.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
78.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
77.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
77.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
76.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
76.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
76.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
76.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
76.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
76.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
75.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
74.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
74.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
74.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
74.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
74.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
74.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
74.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
74.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
74.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
74.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
74.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
74.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
74.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
73.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
73.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
73.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
73.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
73.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
73.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
72.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
72.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
72.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
72.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
71.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
71.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
71.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
71.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
71.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
71.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
70.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
70.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
70.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
70.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
70.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
70.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
70.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
70.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
69.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
69.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
69.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
69.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
69.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
69.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
69.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
69.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
69.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
68.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
68.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
68.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
68.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
68.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
68.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
67.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
67.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
67.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
67.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
67.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
67.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
67.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
66.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
66.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
66.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
66.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
66.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
66.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
66.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
65.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
65.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
65.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
65.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
65.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
65.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
65.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
65.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
65.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
64.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
64.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
64.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
64.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
63.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
63.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
62.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
62.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
62.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
62.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
62.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
62.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
62.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
62.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
62.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
61.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
61.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
61.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
61.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
61.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
61.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
61.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
61.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
61.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
61.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
61.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
60.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
60.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
60.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
60.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
60.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
59.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
59.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
59.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
59.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
59.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
58.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
58.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
58.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
58.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
58.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
57.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
57.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
57.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
57.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
57.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
57.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
57.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
57.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
56.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
56.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
56.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
56.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
55.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
55.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
55.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
54.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
54.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
54.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
54.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
54.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
53.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
53.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
53.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
53.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
53.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
53.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
53.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
53.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
53.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
52.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
52.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
52.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
51.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
51.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
50.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
50.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
50.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
49.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
49.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
49.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
48.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
48.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
48.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
48.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
47.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
47.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
46.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
46.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
46.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
46.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
46.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
46.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
45.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
45.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
45.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
44.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
44.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
44.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
44.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
44.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
44.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
43.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
41.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
41.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
41.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
41.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
40.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
40.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
39.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
39.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
39.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
38.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
38.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
38.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
37.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
37.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
36.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
36.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
35.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
33.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
32.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
25.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
22.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ISCU is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
75.0
Number of samples
231
Samples
Sample
Description
TPM
DO50829
0 years, male, NA, stage:3, alive, 570 days
312.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
296.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
155.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
150.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
142.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
136.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
134.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
133.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
132.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
128.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
127.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
125.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
123.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
120.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
118.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
117.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
114.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
113.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
111.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
110.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
108.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
107.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
107.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
106.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
105.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
105.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
102.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
102.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
100.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
100.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
97.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
97.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
97.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
97.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
96.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
96.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
94.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
94.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
93.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
93.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
92.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
92.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
92.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
92.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
90.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
90.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
90.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
88.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
88.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
87.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
87.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
87.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
87.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
87.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
86.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
86.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
86.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
86.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
85.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
85.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
85.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
85.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
84.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
84.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
83.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
83.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
83.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
83.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
83.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
83.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
82.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
81.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
81.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
81.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
80.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
80.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
80.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
79.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
79.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
79.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
79.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
78.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
78.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
78.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
77.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
77.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
77.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
77.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
76.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
76.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
75.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
75.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
75.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
75.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
74.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
74.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
74.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
73.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
73.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
73.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
73.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
73.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
73.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
72.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
72.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
72.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
71.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
71.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
71.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
71.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
70.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
70.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
70.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
70.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
70.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
70.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
70.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
69.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
69.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
69.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
69.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
69.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
69.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
68.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
67.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
67.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
67.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
67.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
67.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
67.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
67.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
67.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
67.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
66.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
66.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
66.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
66.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
65.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
65.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
65.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
65.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
65.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
65.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
64.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
64.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
64.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
64.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
64.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
63.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
63.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
63.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
63.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
62.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
62.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
62.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
62.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
62.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
61.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
61.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
60.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
60.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
60.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
59.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
59.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
58.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
58.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
58.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
58.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
57.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
57.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
57.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
57.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
57.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
57.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
57.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
56.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
56.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
55.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
55.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
55.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
55.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
55.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
54.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
54.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
53.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
53.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
52.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
51.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
51.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
51.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
51.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
50.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
49.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
49.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
48.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
48.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
48.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
48.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
47.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
47.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
46.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
46.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
45.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
45.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
45.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
44.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
43.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
41.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
40.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
39.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
39.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
39.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
39.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
38.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
37.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
37.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
36.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
36.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
36.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
31.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
23.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1041
Tumor
1.4
915
Tumor
1.2
553
Tumor
1.1
925
Tumor
1.0
513
Tumor
1.0
571
Tumor
1.0
745
Tumor
0.9
477
Tumor
0.9
537
Tumor
0.8
967
Tumor
0.8
491
Tumor
0.8
473
Tumor
0.8
1013
Tumor
0.8
957
Tumor
0.7
785
Tumor
0.7
487
Tumor
0.7
755
Tumor
0.7
525
Tumor
0.7
921
Tumor
0.7
231
Tumor
0.7
355
Tumor
0.7
695
Tumor
0.7
861
Tumor
0.6
865
Tumor
0.6
883
Tumor
0.6
123
Tumor
0.6
557
Tumor
0.6
741
Tumor
0.6
1025
Tumor
0.6
937
Tumor
0.6
261
Tumor
0.5
171
Tumor
0.5
493
Tumor
0.5
483
Tumor
0.5
327
Tumor
0.5
965
Tumor
0.4
535
Tumor
0.4
823
Tumor
0.4
227
Tumor
0.4
867
Tumor
0.4
267
Tumor
0.4
517
Tumor
0.4
435
Tumor
0.4
465
Tumor
0.4
911
Tumor
0.4
851
Tumor
0.3
685
Tumor
0.3
1043
Tumor
0.3
554
Normal
0.3
546
Normal
0.3
964
Normal
0.3
1045
Tumor
0.3
877
Tumor
0.3
564
Normal
0.3
617
Tumor
0.3
211
Tumor
0.2
1044
Normal
0.2
515
Tumor
0.2
494
Normal
0.2
727
Tumor
0.2
777
Tumor
0.2
963
Tumor
0.2
647
Tumor
0.2
425
Tumor
0.2
363
Tumor
0.2
715
Tumor
0.2
411
Tumor
0.2
558
Normal
0.2
534
Normal
0.2
563
Tumor
0.2
1046
Normal
0.1
391
Tumor
0.1
738
Normal
0.1
686
Normal
0.1
756
Normal
0.1
817
Tumor
0.1
448
Normal
0.1
953
Tumor
0.1
516
Normal
0.1
131
Tumor
0.1
951
Tumor
0.1
361
Tumor
0.1
484
Normal
0.1
514
Normal
0.1
958
Normal
0.1
696
Normal
0.1
746
Normal
0.1
968
Normal
0.1
743
Tumor
0.1
698
Normal
0.1
451
Tumor
0.1
728
Normal
0.1
351
Tumor
0.1
145
Tumor
0.1
545
Tumor
0.1
518
Normal
0.1
944
Normal
0.1
723
Tumor
0.1
497
Tumor
0.1
488
Normal
0.1
474
Normal
0.1
1032
Normal
0.1
952
Normal
0.1
714
Normal
0.1
412
Normal
0.1
492
Normal
0.1
713
Tumor
0.1
914
Normal
0.1
981
Tumor
0.1
572
Normal
0.1
786
Normal
0.1
977
Tumor
0.0
395
Tumor
0.0
523
Tumor
0.0
538
Normal
0.0
663
Tumor
0.0
142
Normal
0.0
976
Normal
0.0
135
Tumor
0.0
955
Tumor
0.0
568
Normal
0.0
881
Tumor
0.0
223
Tumor
0.0
567
Tumor
0.0
573
Tumor
0.0
671
Tumor
0.0
635
Tumor
0.0
257
Tumor
0.0
285
Tumor
0.0
627
Tumor
0.0
1022
Normal
0.0
873
Tumor
0.0
113
Tumor
0.0
858
Normal
0.0
1027
Tumor
0.0
415
Tumor
0.0
127
Tumor
0.0
641
Tumor
0.0
716
Normal
0.0
526
Normal
0.0
824
Normal
0.0
1028
Normal
0.0
852
Normal
0.0
724
Normal
0.0
742
Normal
0.0
471
Tumor
0.0
1021
Tumor
0.0
923
Tumor
0.0
913
Tumor
0.0
864
Normal
0.0
878
Normal
0.0
574
Normal
0.0
1015
Tumor
0.0
722
Normal
0.0
367
Tumor
0.0
328
Normal
0.0
353
Tumor
0.0
874
Normal
-0.1
472
Normal
-0.1
533
Tumor
-0.1
524
Normal
-0.1
132
Normal
-0.1
1031
Tumor
-0.1
918
Normal
-0.1
818
Normal
-0.1
862
Normal
-0.1
744
Normal
-0.1
536
Normal
-0.1
221
Tumor
-0.1
882
Normal
-0.1
278
Normal
-0.1
528
Normal
-0.1
128
Normal
-0.1
778
Normal
-0.1
416
Normal
-0.1
1016
Normal
-0.1
341
Tumor
-0.1
1026
Normal
-0.1
375
Tumor
-0.1
228
Normal
-0.1
1014
Normal
-0.1
436
Normal
-0.1
697
Tumor
-0.1
161
Tumor
-0.1
362
Normal
-0.1
481
Tumor
-0.1
136
Normal
-0.1
868
Normal
-0.1
866
Normal
-0.1
283
Tumor
-0.2
628
Normal
-0.2
956
Normal
-0.2
212
Normal
-0.2
356
Normal
-0.2
313
Tumor
-0.2
615
Tumor
-0.2
376
Normal
-0.2
364
Normal
-0.2
816
Normal
-0.2
387
Tumor
-0.2
383
Tumor
-0.2
298
Normal
-0.2
922
Normal
-0.2
966
Normal
-0.2
924
Normal
-0.2
498
Normal
-0.2
857
Tumor
-0.2
137
Tumor
-0.2
284
Normal
-0.2
975
Tumor
-0.2
1042
Normal
-0.2
648
Normal
-0.2
982
Normal
-0.2
462
Normal
-0.2
466
Normal
-0.2
616
Normal
-0.2
112
Tumor
-0.2
138
Normal
-0.2
185
Tumor
-0.2
943
Tumor
-0.2
463
Tumor
-0.2
636
Normal
-0.2
385
Tumor
-0.2
665
Tumor
-0.2
721
Tumor
-0.3
213
Tumor
-0.3
312
Normal
-0.3
366
Normal
-0.3
384
Normal
-0.3
433
Tumor
-0.3
482
Normal
-0.3
447
Tumor
-0.3
618
Normal
-0.3
478
Normal
-0.3
141
Tumor
-0.3
368
Normal
-0.3
386
Normal
-0.3
672
Normal
-0.3
916
Normal
-0.3
666
Normal
-0.3
365
Tumor
-0.3
527
Tumor
-0.3
452
Normal
-0.3
664
Normal
-0.3
314
Normal
-0.3
662
Normal
-0.3
277
Tumor
-0.3
978
Normal
-0.3
195
Tumor
-0.3
884
Normal
-0.3
394
Normal
-0.3
388
Normal
-0.3
468
Normal
-0.3
954
Normal
-0.3
332
Normal
-0.3
114
Normal
-0.3
396
Normal
-0.4
938
Normal
-0.4
392
Normal
-0.4
258
Normal
-0.4
172
Normal
-0.4
461
Tumor
-0.4
642
Normal
-0.4
262
Normal
-0.4
146
Normal
-0.4
358
Normal
-0.4
421
Tumor
-0.4
232
Normal
-0.4
286
Normal
-0.4
224
Normal
-0.4
431
Tumor
-0.4
331
Tumor
-0.4
926
Normal
-0.4
912
Normal
-0.4
354
Normal
-0.4
214
Normal
-0.4
297
Tumor
-0.4
737
Tumor
-0.4
434
Normal
-0.4
814
Normal
-0.4
187
Tumor
-0.5
272
Normal
-0.5
426
Normal
-0.5
456
Normal
-0.5
147
Tumor
-0.5
464
Normal
-0.5
427
Tumor
-0.5
983
Tumor
-0.5
188
Normal
-0.5
423
Tumor
-0.5
422
Normal
-0.5
271
Tumor
-0.5
111
Normal
-0.5
218
Normal
-0.5
311
Tumor
-0.5
268
Normal
-0.5
196
Normal
-0.5
162
Normal
-0.5
813
Tumor
-0.5
446
Normal
-0.5
984
Normal
-0.5
344
Normal
-0.5
342
Normal
-0.5
148
Normal
-0.5
217
Tumor
-0.5
126
Normal
-0.5
443
Tumor
-0.6
222
Normal
-0.6
393
Tumor
-0.6
467
Tumor
-0.6
455
Tumor
-0.6
815
Tumor
-0.6
192
Normal
-0.6
661
Tumor
-0.6
413
Tumor
-0.6
186
Normal
-0.6
414
Normal
-0.6
357
Tumor
-0.6
445
Tumor
-0.6
428
Normal
-0.6
191
Tumor
-0.6
352
Normal
-0.7
124
Normal
-0.7
432
Normal
-0.7
917
Tumor
-0.7
444
Normal
-0.8
125
Tumor
-0.8
424
Normal
-0.9
343
Tumor
-1.2
863
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
