We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CAB39 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
58.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
53.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
45.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
44.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
34.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
33.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
31.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
29.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
27.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
25.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
25.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
25.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
25.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
24.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
23.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
23.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
23.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
23.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
22.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
22.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
21.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
21.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
21.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
20.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
19.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
19.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
19.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
18.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
18.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
17.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
17.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
17.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
16.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
15.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
15.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
15.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.6
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
14.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
14.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
14.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
13.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
13.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
13.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
13.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
13.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
12.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
12.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
11.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
11.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
10.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
9.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
8.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
8.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
8.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
6.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.8
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CAB39 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.9
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
46.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
42.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
40.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
38.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
37.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
35.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
34.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
31.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
31.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
31.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
30.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
29.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
28.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
28.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
28.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
28.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
27.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
27.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
26.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
26.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
25.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
25.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
25.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
24.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
24.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
23.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
23.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
23.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
23.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
23.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
22.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
22.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
22.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
22.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
21.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
21.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
21.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
21.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
20.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
20.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
19.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
19.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
19.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
19.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
19.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
19.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
18.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
18.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
18.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
17.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
17.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
17.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
17.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
16.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
16.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
16.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
16.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
16.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
15.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
15.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
14.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
14.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
14.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
13.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
13.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
12.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
11.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
6.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
147
Tumor
0.8
863
Tumor
0.6
641
Tumor
0.6
517
Tumor
0.6
425
Tumor
0.5
745
Tumor
0.5
724
Normal
0.5
737
Tumor
0.5
463
Tumor
0.5
131
Tumor
0.4
375
Tumor
0.4
851
Tumor
0.4
171
Tumor
0.4
917
Tumor
0.4
1031
Tumor
0.4
125
Tumor
0.4
553
Tumor
0.3
363
Tumor
0.3
617
Tumor
0.3
647
Tumor
0.3
471
Tumor
0.3
983
Tumor
0.3
221
Tumor
0.3
135
Tumor
0.3
1043
Tumor
0.3
515
Tumor
0.3
285
Tumor
0.3
126
Normal
0.3
1027
Tumor
0.2
1025
Tumor
0.2
967
Tumor
0.2
524
Normal
0.2
415
Tumor
0.2
743
Tumor
0.2
277
Tumor
0.2
112
Tumor
0.2
527
Tumor
0.2
297
Tumor
0.2
497
Tumor
0.2
535
Tumor
0.2
227
Tumor
0.2
445
Tumor
0.2
963
Tumor
0.2
481
Tumor
0.2
965
Tumor
0.2
911
Tumor
0.2
271
Tumor
0.2
984
Normal
0.2
661
Tumor
0.2
816
Normal
0.2
455
Tumor
0.2
111
Normal
0.2
498
Normal
0.2
824
Normal
0.1
195
Tumor
0.1
882
Normal
0.1
365
Tumor
0.1
311
Tumor
0.1
738
Normal
0.1
472
Normal
0.1
861
Tumor
0.1
114
Normal
0.1
137
Tumor
0.1
313
Tumor
0.1
444
Normal
0.1
975
Tumor
0.1
257
Tumor
0.1
715
Tumor
0.1
217
Tumor
0.1
128
Normal
0.1
953
Tumor
0.1
852
Normal
0.1
492
Normal
0.1
778
Normal
0.1
723
Tumor
0.1
728
Normal
0.1
283
Tumor
0.1
478
Normal
0.1
883
Tumor
0.1
714
Normal
0.1
567
Tumor
0.1
742
Normal
0.1
536
Normal
0.1
665
Tumor
0.1
113
Tumor
0.1
192
Normal
0.1
884
Normal
0.1
864
Normal
0.1
537
Tumor
0.1
727
Tumor
0.1
921
Tumor
0.1
461
Tumor
0.1
462
Normal
0.1
813
Tumor
0.1
866
Normal
0.1
881
Tumor
0.1
571
Tumor
0.1
663
Tumor
0.1
572
Normal
0.1
867
Tumor
0.1
862
Normal
0.1
142
Normal
0.1
146
Normal
0.1
697
Tumor
0.1
447
Tumor
0.1
943
Tumor
0.1
127
Tumor
0.1
721
Tumor
0.1
518
Normal
0.1
786
Normal
0.1
938
Normal
0.1
966
Normal
0.1
756
Normal
0.1
484
Normal
0.1
434
Normal
0.1
1042
Normal
0.1
191
Tumor
0.1
211
Tumor
0.1
818
Normal
0.0
231
Tumor
0.0
916
Normal
0.0
878
Normal
0.0
744
Normal
0.0
124
Normal
0.0
141
Tumor
0.0
412
Normal
0.0
1022
Normal
0.0
857
Tumor
0.0
746
Normal
0.0
218
Normal
0.0
823
Tumor
0.0
858
Normal
0.0
1021
Tumor
0.0
664
Normal
0.0
873
Tumor
0.0
716
Normal
0.0
482
Normal
0.0
568
Normal
0.0
662
Normal
0.0
874
Normal
0.0
473
Tumor
0.0
367
Tumor
0.0
185
Tumor
0.0
924
Normal
0.0
431
Tumor
0.0
528
Normal
0.0
392
Normal
0.0
977
Tumor
0.0
557
Tumor
0.0
386
Normal
0.0
915
Tumor
0.0
926
Normal
0.0
944
Normal
0.0
951
Tumor
0.0
1016
Normal
0.0
666
Normal
0.0
456
Normal
0.0
148
Normal
0.0
868
Normal
0.0
912
Normal
0.0
516
Normal
0.0
814
Normal
0.0
558
Normal
0.0
696
Normal
0.0
957
Tumor
0.0
954
Normal
0.0
1026
Normal
0.0
574
Normal
0.0
978
Normal
0.0
493
Tumor
0.0
538
Normal
0.0
648
Normal
0.0
494
Normal
0.0
526
Normal
0.0
564
Normal
0.0
342
Normal
0.0
952
Normal
0.0
1032
Normal
0.0
686
Normal
0.0
188
Normal
0.0
132
Normal
0.0
435
Tumor
0.0
488
Normal
0.0
356
Normal
0.0
514
Normal
0.0
352
Normal
0.0
395
Tumor
0.0
474
Normal
0.0
213
Tumor
0.0
777
Tumor
0.0
1044
Normal
0.0
628
Normal
0.0
1014
Normal
0.0
722
Normal
0.0
672
Normal
0.0
312
Normal
0.0
616
Normal
0.0
394
Normal
0.0
383
Tumor
0.0
214
Normal
0.0
416
Normal
0.0
534
Normal
0.0
387
Tumor
0.0
187
Tumor
0.0
981
Tumor
0.0
446
Normal
0.0
224
Normal
0.0
384
Normal
0.0
1045
Tumor
0.0
982
Normal
0.0
138
Normal
0.0
968
Normal
0.0
136
Normal
0.0
1028
Normal
0.0
298
Normal
0.0
635
Tumor
0.0
362
Normal
0.0
922
Normal
0.0
196
Normal
0.0
427
Tumor
0.0
228
Normal
0.0
443
Tumor
0.0
573
Tumor
0.0
785
Tumor
0.0
1015
Tumor
0.0
364
Normal
0.0
421
Tumor
0.0
955
Tumor
0.0
755
Tumor
0.0
396
Normal
0.0
467
Tumor
0.0
223
Tumor
-0.1
956
Normal
-0.1
451
Tumor
-0.1
713
Tumor
-0.1
448
Normal
-0.1
563
Tumor
-0.1
366
Normal
-0.1
1046
Normal
-0.1
436
Normal
-0.1
618
Normal
-0.1
354
Normal
-0.1
432
Normal
-0.1
284
Normal
-0.1
343
Tumor
-0.1
278
Normal
-0.1
464
Normal
-0.1
523
Tumor
-0.1
525
Tumor
-0.1
358
Normal
-0.1
424
Normal
-0.1
123
Tumor
-0.1
261
Tumor
-0.1
355
Tumor
-0.1
487
Tumor
-0.1
695
Tumor
-0.1
162
Normal
-0.1
698
Normal
-0.1
491
Tumor
-0.1
976
Normal
-0.1
268
Normal
-0.1
627
Tumor
-0.1
466
Normal
-0.1
546
Normal
-0.1
554
Normal
-0.1
262
Normal
-0.1
414
Normal
-0.1
671
Tumor
-0.1
368
Normal
-0.1
376
Normal
-0.1
361
Tumor
-0.1
918
Normal
-0.1
964
Normal
-0.1
286
Normal
-0.1
222
Normal
-0.1
328
Normal
-0.1
636
Normal
-0.1
914
Normal
-0.1
145
Tumor
-0.1
468
Normal
-0.1
212
Normal
-0.1
413
Tumor
-0.1
483
Tumor
-0.1
958
Normal
-0.1
422
Normal
-0.1
232
Normal
-0.1
642
Normal
-0.1
172
Normal
-0.1
186
Normal
-0.1
388
Normal
-0.1
426
Normal
-0.1
314
Normal
-0.1
331
Tumor
-0.1
344
Normal
-0.1
865
Tumor
-0.1
272
Normal
-0.1
1013
Tumor
-0.1
327
Tumor
-0.1
332
Normal
-0.1
428
Normal
-0.1
351
Tumor
-0.1
353
Tumor
-0.2
357
Tumor
-0.2
433
Tumor
-0.2
815
Tumor
-0.2
937
Tumor
-0.2
391
Tumor
-0.2
477
Tumor
-0.2
452
Normal
-0.2
341
Tumor
-0.2
817
Tumor
-0.2
923
Tumor
-0.2
615
Tumor
-0.2
913
Tumor
-0.2
258
Normal
-0.2
1041
Tumor
-0.2
925
Tumor
-0.3
161
Tumor
-0.3
545
Tumor
-0.3
393
Tumor
-0.3
741
Tumor
-0.3
411
Tumor
-0.3
385
Tumor
-0.3
423
Tumor
-0.3
513
Tumor
-0.4
267
Tumor
-0.4
533
Tumor
-0.4
685
Tumor
-0.4
465
Tumor
-0.4
877
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
