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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMBIM1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
90.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
329.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
280.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
239.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
236.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
227.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
226.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
223.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
214.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
210.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
208.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
203.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
202.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
195.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
194.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
194.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
190.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
187.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
179.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
179.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
179.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
176.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
175.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
175.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
172.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
170.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
170.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
168.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
167.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
165.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
161.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
156.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
155.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
154.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
154.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
152.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
149.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
148.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
148.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
147.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
146.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
146.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
144.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
144.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
144.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
143.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
143.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
142.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
140.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
139.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
138.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
135.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
135.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
134.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
134.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
133.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
133.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
132.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
131.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
130.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
128.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
127.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
127.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
126.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
126.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
126.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
125.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
123.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
121.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
121.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
120.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
120.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
119.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
118.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
118.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
117.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
117.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
117.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
116.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
115.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
115.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
114.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
114.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
113.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
113.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
113.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
113.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
112.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
111.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
111.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
110.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
110.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
110.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
110.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
110.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
109.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
109.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
108.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
108.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
108.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
108.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
108.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
105.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
105.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
105.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
104.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
104.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
104.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
104.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
103.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
103.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
103.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
102.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
101.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
101.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
101.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
101.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
100.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
100.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
99.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
99.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
99.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
98.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
98.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
97.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
97.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
97.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
97.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
97.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
96.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
96.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
96.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
96.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
95.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
95.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
95.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
95.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
95.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
94.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
94.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
93.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
93.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
93.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
92.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
92.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
91.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
91.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
91.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
90.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
90.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
90.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
89.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
89.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
88.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
88.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
88.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
87.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
87.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
87.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
86.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
86.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
86.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
86.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
86.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
86.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
86.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
86.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
86.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
85.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
85.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
84.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
84.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
84.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
83.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
83.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
83.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
83.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
83.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
83.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
82.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
82.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
82.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
82.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
82.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
80.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
80.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
80.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
79.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
79.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
79.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
79.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
79.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
78.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
78.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
78.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
78.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
78.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
77.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
77.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
77.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
76.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
76.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
76.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
76.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
75.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
75.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
75.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
74.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
74.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
74.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
73.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
73.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
73.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
73.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
72.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
72.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
72.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
72.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
72.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
71.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
71.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
71.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
71.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
70.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
70.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
69.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
69.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
69.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
69.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
69.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
69.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
68.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
68.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
68.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
67.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
67.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
66.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
66.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
66.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
66.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
66.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
66.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
66.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
66.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
66.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
65.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
65.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
65.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
65.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
64.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
64.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
64.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
64.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
63.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
62.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
62.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
62.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
61.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
61.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
61.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
61.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
61.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
61.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
60.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
60.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
59.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
59.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
58.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
58.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
57.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
57.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
56.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
56.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
56.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
55.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
55.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
55.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
54.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
53.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
53.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
53.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
53.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
52.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
52.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
52.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
52.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
52.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
51.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
51.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
51.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
51.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
51.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
51.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
51.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
51.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
51.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
51.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
50.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
50.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
50.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
50.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
50.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
50.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
50.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
50.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
50.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
49.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
49.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
49.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
48.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
48.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
48.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
48.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
47.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
47.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
47.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
47.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
47.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
47.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
46.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
46.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
46.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
46.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
46.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
46.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
46.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
45.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
44.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
44.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
43.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
43.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
43.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
42.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
42.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
41.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
40.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
39.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
39.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
38.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
36.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
36.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
36.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
35.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
35.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
35.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
33.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
32.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
30.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
29.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
27.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
26.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
26.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
23.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
22.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
20.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMBIM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
82.2
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
655.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
370.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
303.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
258.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
219.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
218.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
194.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
192.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
183.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
181.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
176.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
171.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
167.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
157.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
152.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
151.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
151.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
138.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
138.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
136.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
136.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
133.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
128.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
126.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
124.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
124.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
124.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
123.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
123.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
121.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
118.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
117.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
117.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
116.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
116.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
115.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
113.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
112.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
111.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
111.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
111.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
111.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
110.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
110.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
109.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
108.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
108.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
107.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
104.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
103.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
101.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
99.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
98.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
98.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
98.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
97.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
97.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
97.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
97.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
95.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
94.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
93.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
91.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
90.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
90.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
90.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
88.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
88.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
87.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
87.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
86.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
86.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
86.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
85.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
84.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
84.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
84.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
83.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
83.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
82.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
81.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
80.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
80.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
80.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
79.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
78.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
78.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
78.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
77.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
77.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
77.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
77.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
77.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
76.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
76.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
76.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
76.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
76.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
75.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
75.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
74.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
74.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
73.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
73.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
73.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
72.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
72.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
72.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
71.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
71.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
71.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
71.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
70.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
70.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
70.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
70.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
70.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
70.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
69.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
69.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
69.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
69.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
68.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
68.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
67.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
67.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
67.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
67.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
67.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
66.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
66.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
66.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
65.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
63.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
63.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
63.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
63.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
62.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
62.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
62.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
61.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
61.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
61.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
60.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
60.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
60.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
59.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
59.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
58.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
58.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
58.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
58.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
58.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
58.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
57.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
57.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
57.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
56.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
56.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
56.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
56.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
55.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
55.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
55.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
54.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
54.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
52.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
52.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
51.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
51.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
51.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
50.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
50.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
50.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
50.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
50.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
49.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
49.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
48.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
48.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
48.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
48.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
47.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
47.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
47.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
47.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
46.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
45.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
44.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
43.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
43.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
43.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
43.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
43.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
42.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
42.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
41.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
41.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
39.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
39.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
39.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
39.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
39.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
38.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
36.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
36.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
35.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
34.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
33.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
33.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
31.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
30.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
29.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
26.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
24.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
22.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
20.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
858
Normal
1.5
857
Tumor
1.3
271
Tumor
1.1
553
Tumor
1.1
385
Tumor
1.1
851
Tumor
1.1
863
Tumor
1.0
221
Tumor
0.9
1025
Tumor
0.9
967
Tumor
0.9
471
Tumor
0.9
1027
Tumor
0.9
975
Tumor
0.9
527
Tumor
0.9
671
Tumor
0.8
331
Tumor
0.8
277
Tumor
0.8
131
Tumor
0.8
413
Tumor
0.8
515
Tumor
0.8
743
Tumor
0.7
641
Tumor
0.7
951
Tumor
0.7
455
Tumor
0.7
425
Tumor
0.6
363
Tumor
0.6
415
Tumor
0.6
817
Tumor
0.6
635
Tumor
0.6
963
Tumor
0.6
443
Tumor
0.6
737
Tumor
0.6
147
Tumor
0.6
921
Tumor
0.5
917
Tumor
0.5
1031
Tumor
0.5
393
Tumor
0.5
192
Normal
0.5
573
Tumor
0.5
387
Tumor
0.5
386
Normal
0.5
943
Tumor
0.5
517
Tumor
0.5
483
Tumor
0.4
523
Tumor
0.4
463
Tumor
0.4
498
Normal
0.4
1021
Tumor
0.4
977
Tumor
0.4
954
Normal
0.4
391
Tumor
0.4
268
Normal
0.4
968
Normal
0.4
617
Tumor
0.4
636
Normal
0.4
618
Normal
0.4
627
Tumor
0.4
536
Normal
0.4
713
Tumor
0.3
814
Normal
0.3
343
Tumor
0.3
881
Tumor
0.3
493
Tumor
0.3
1028
Normal
0.3
388
Normal
0.3
745
Tumor
0.3
538
Normal
0.3
217
Tumor
0.3
297
Tumor
0.3
524
Normal
0.3
124
Normal
0.3
213
Tumor
0.3
395
Tumor
0.3
883
Tumor
0.3
231
Tumor
0.3
697
Tumor
0.3
188
Normal
0.3
444
Normal
0.3
432
Normal
0.3
396
Normal
0.3
191
Tumor
0.3
313
Tumor
0.3
1042
Normal
0.2
218
Normal
0.2
185
Tumor
0.2
877
Tumor
0.2
412
Normal
0.2
1045
Tumor
0.2
966
Normal
0.2
445
Tumor
0.2
421
Tumor
0.2
394
Normal
0.2
535
Tumor
0.2
285
Tumor
0.2
367
Tumor
0.2
195
Tumor
0.2
916
Normal
0.2
494
Normal
0.2
434
Normal
0.2
823
Tumor
0.2
212
Normal
0.2
755
Tumor
0.2
365
Tumor
0.2
813
Tumor
0.2
211
Tumor
0.2
222
Normal
0.2
868
Normal
0.2
642
Normal
0.2
926
Normal
0.2
392
Normal
0.2
447
Tumor
0.2
187
Tumor
0.2
341
Tumor
0.2
492
Normal
0.2
433
Tumor
0.2
311
Tumor
0.1
983
Tumor
0.1
866
Normal
0.1
628
Normal
0.1
428
Normal
0.1
461
Tumor
0.1
956
Normal
0.1
864
Normal
0.1
672
Normal
0.1
976
Normal
0.1
1046
Normal
0.1
171
Tumor
0.1
416
Normal
0.1
468
Normal
0.1
477
Tumor
0.1
696
Normal
0.1
462
Normal
0.1
145
Tumor
0.1
1044
Normal
0.1
196
Normal
0.1
137
Tumor
0.1
362
Normal
0.1
756
Normal
0.1
284
Normal
0.1
925
Tumor
0.1
514
Normal
0.1
125
Tumor
0.1
922
Normal
0.1
661
Tumor
0.1
824
Normal
0.1
563
Tumor
0.1
487
Tumor
0.1
815
Tumor
0.1
874
Normal
0.1
414
Normal
0.1
328
Normal
0.0
528
Normal
0.0
1041
Tumor
0.0
223
Tumor
0.0
1026
Normal
0.0
867
Tumor
0.0
227
Tumor
0.0
148
Normal
0.0
478
Normal
0.0
666
Normal
0.0
545
Tumor
0.0
314
Normal
0.0
911
Tumor
0.0
361
Tumor
0.0
135
Tumor
0.0
138
Normal
0.0
1015
Tumor
0.0
1016
Normal
0.0
214
Normal
0.0
456
Normal
0.0
422
Normal
0.0
312
Normal
0.0
224
Normal
0.0
355
Tumor
0.0
818
Normal
0.0
488
Normal
0.0
327
Tumor
0.0
685
Tumor
0.0
172
Normal
0.0
955
Tumor
0.0
958
Normal
0.0
728
Normal
0.0
162
Normal
0.0
914
Normal
0.0
142
Normal
0.0
724
Normal
0.0
884
Normal
0.0
534
Normal
0.0
727
Tumor
0.0
526
Normal
0.0
464
Normal
0.0
616
Normal
0.0
918
Normal
0.0
964
Normal
0.0
915
Tumor
0.0
513
Tumor
0.0
497
Tumor
0.0
332
Normal
0.0
978
Normal
0.0
452
Normal
-0.1
662
Normal
-0.1
554
Normal
-0.1
484
Normal
-0.1
481
Tumor
-0.1
723
Tumor
-0.1
518
Normal
-0.1
356
Normal
-0.1
364
Normal
-0.1
567
Tumor
-0.1
664
Normal
-0.1
516
Normal
-0.1
141
Tumor
-0.1
111
Normal
-0.1
262
Normal
-0.1
1032
Normal
-0.1
525
Tumor
-0.1
446
Normal
-0.1
436
Normal
-0.1
482
Normal
-0.1
923
Tumor
-0.1
126
Normal
-0.1
777
Tumor
-0.1
862
Normal
-0.1
913
Tumor
-0.1
427
Tumor
-0.1
615
Tumor
-0.1
472
Normal
-0.1
272
Normal
-0.1
982
Normal
-0.1
426
Normal
-0.1
738
Normal
-0.1
937
Tumor
-0.1
938
Normal
-0.1
572
Normal
-0.1
286
Normal
-0.1
257
Tumor
-0.1
232
Normal
-0.1
1022
Normal
-0.1
558
Normal
-0.1
491
Tumor
-0.1
878
Normal
-0.1
714
Normal
-0.1
114
Normal
-0.1
357
Tumor
-0.1
785
Tumor
-0.2
375
Tumor
-0.2
258
Normal
-0.2
574
Normal
-0.2
448
Normal
-0.2
146
Normal
-0.2
451
Tumor
-0.2
186
Normal
-0.2
648
Normal
-0.2
435
Tumor
-0.2
352
Normal
-0.2
424
Normal
-0.2
123
Tumor
-0.2
474
Normal
-0.2
283
Tumor
-0.2
715
Tumor
-0.2
557
Tumor
-0.2
533
Tumor
-0.2
136
Normal
-0.2
466
Normal
-0.2
411
Tumor
-0.2
354
Normal
-0.2
571
Tumor
-0.2
698
Normal
-0.2
852
Normal
-0.2
423
Tumor
-0.2
113
Tumor
-0.2
127
Tumor
-0.2
384
Normal
-0.2
953
Tumor
-0.2
564
Normal
-0.2
786
Normal
-0.2
686
Normal
-0.2
278
Normal
-0.2
368
Normal
-0.2
358
Normal
-0.2
1014
Normal
-0.2
465
Tumor
-0.2
351
Tumor
-0.2
383
Tumor
-0.3
546
Normal
-0.3
873
Tumor
-0.3
353
Tumor
-0.3
952
Normal
-0.3
537
Tumor
-0.3
1043
Tumor
-0.3
778
Normal
-0.3
912
Normal
-0.3
267
Tumor
-0.3
944
Normal
-0.3
695
Tumor
-0.3
473
Tumor
-0.3
984
Normal
-0.3
965
Tumor
-0.3
568
Normal
-0.3
981
Tumor
-0.3
663
Tumor
-0.3
924
Normal
-0.3
816
Normal
-0.3
376
Normal
-0.3
742
Normal
-0.3
744
Normal
-0.3
665
Tumor
-0.3
467
Tumor
-0.4
716
Normal
-0.4
228
Normal
-0.4
746
Normal
-0.4
128
Normal
-0.4
366
Normal
-0.4
344
Normal
-0.4
957
Tumor
-0.5
722
Normal
-0.5
298
Normal
-0.5
647
Tumor
-0.5
882
Normal
-0.5
112
Tumor
-0.5
132
Normal
-0.5
161
Tumor
-0.5
741
Tumor
-0.5
261
Tumor
-0.5
1013
Tumor
-0.6
721
Tumor
-0.6
431
Tumor
-0.7
861
Tumor
-0.7
342
Normal
-0.7
865
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
