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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMC1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
159.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
155.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
113.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
105.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
101.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
94.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
90.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
87.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
86.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
80.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
77.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
68.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
68.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
62.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
59.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
57.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
57.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
52.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
51.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
51.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
48.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
46.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
46.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
46.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
45.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
44.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
43.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
42.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
41.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
40.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
39.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
38.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
38.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
36.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
36.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
35.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
35.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
35.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
33.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
32.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
32.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
31.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
31.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
31.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
30.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
29.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
29.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
29.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
28.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
27.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
24.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
24.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
24.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
23.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
23.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
22.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
22.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
22.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
21.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
21.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
21.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
20.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
20.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
20.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
20.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
20.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
19.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
19.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
19.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
18.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
18.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
17.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
17.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
17.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
17.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
17.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
17.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
17.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
17.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
17.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
16.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
16.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
15.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
15.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
13.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
12.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
12.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
11.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
11.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
7.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMC1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.2
Number of samples
231
Samples
Sample
Description
TPM
DO45189
0 years, female, NA, stage:2, alive, 1200 days
193.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
178.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
175.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
153.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
153.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
88.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
82.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
78.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
75.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
75.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
70.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
68.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
64.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
61.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
58.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
57.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
57.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
55.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
54.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
52.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
50.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
50.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
46.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
45.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
43.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
42.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
42.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
41.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
40.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
40.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
39.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
39.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
36.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
36.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
33.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
33.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
33.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
32.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
29.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
29.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
29.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
29.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
28.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
28.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
28.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
28.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
27.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
27.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
26.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
26.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
26.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
25.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
25.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
25.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
23.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
21.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
21.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
21.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
20.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
20.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
18.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
18.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
18.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
17.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
17.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
17.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
16.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
13.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
12.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
11.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
4.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.0
715
Tumor
1.6
545
Tumor
1.4
685
Tumor
1.4
671
Tumor
1.3
915
Tumor
1.3
823
Tumor
1.2
131
Tumor
1.2
343
Tumor
1.2
192
Normal
1.1
171
Tumor
1.1
877
Tumor
1.1
363
Tumor
1.1
483
Tumor
1.0
981
Tumor
1.0
331
Tumor
0.9
283
Tumor
0.8
161
Tumor
0.8
421
Tumor
0.8
491
Tumor
0.8
911
Tumor
0.8
185
Tumor
0.7
383
Tumor
0.7
817
Tumor
0.7
473
Tumor
0.7
227
Tumor
0.7
455
Tumor
0.7
883
Tumor
0.7
471
Tumor
0.7
311
Tumor
0.7
697
Tumor
0.7
427
Tumor
0.6
261
Tumor
0.6
327
Tumor
0.6
451
Tumor
0.6
965
Tumor
0.6
355
Tumor
0.6
1015
Tumor
0.6
975
Tumor
0.6
977
Tumor
0.6
297
Tumor
0.6
525
Tumor
0.6
213
Tumor
0.6
963
Tumor
0.5
461
Tumor
0.5
492
Normal
0.5
231
Tumor
0.5
361
Tumor
0.5
195
Tumor
0.5
146
Normal
0.5
713
Tumor
0.5
367
Tumor
0.5
385
Tumor
0.5
957
Tumor
0.5
444
Normal
0.5
223
Tumor
0.5
187
Tumor
0.4
538
Normal
0.4
141
Tumor
0.4
917
Tumor
0.4
881
Tumor
0.4
137
Tumor
0.4
447
Tumor
0.4
465
Tumor
0.4
523
Tumor
0.4
943
Tumor
0.4
1025
Tumor
0.4
813
Tumor
0.3
393
Tumor
0.3
916
Normal
0.3
563
Tumor
0.3
627
Tumor
0.3
277
Tumor
0.3
268
Normal
0.3
1041
Tumor
0.3
535
Tumor
0.3
1045
Tumor
0.3
1013
Tumor
0.3
647
Tumor
0.3
874
Normal
0.3
493
Tumor
0.3
353
Tumor
0.3
145
Tumor
0.3
777
Tumor
0.3
257
Tumor
0.2
923
Tumor
0.2
665
Tumor
0.2
395
Tumor
0.2
513
Tumor
0.2
515
Tumor
0.2
741
Tumor
0.2
188
Normal
0.2
861
Tumor
0.2
615
Tumor
0.2
498
Normal
0.2
557
Tumor
0.2
463
Tumor
0.2
375
Tumor
0.2
536
Normal
0.2
384
Normal
0.2
478
Normal
0.2
958
Normal
0.1
386
Normal
0.1
672
Normal
0.1
867
Tumor
0.1
411
Tumor
0.1
354
Normal
0.1
814
Normal
0.1
191
Tumor
0.1
857
Tumor
0.1
744
Normal
0.1
553
Tumor
0.1
433
Tumor
0.1
1044
Normal
0.1
527
Tumor
0.1
921
Tumor
0.1
364
Normal
0.0
351
Tumor
0.0
126
Normal
0.0
423
Tumor
0.0
537
Tumor
0.0
312
Normal
0.0
516
Normal
0.0
982
Normal
0.0
635
Tumor
0.0
967
Tumor
0.0
472
Normal
0.0
365
Tumor
0.0
574
Normal
0.0
572
Normal
0.0
863
Tumor
0.0
695
Tumor
0.0
135
Tumor
0.0
953
Tumor
0.0
431
Tumor
-0.1
362
Normal
-0.1
517
Tumor
-0.1
477
Tumor
-0.1
357
Tumor
-0.1
785
Tumor
-0.1
416
Normal
-0.1
211
Tumor
-0.1
415
Tumor
-0.1
524
Normal
-0.1
533
Tumor
-0.1
224
Normal
-0.1
727
Tumor
-0.1
394
Normal
-0.1
976
Normal
-0.1
313
Tumor
-0.1
573
Tumor
-0.1
127
Tumor
-0.1
641
Tumor
-0.2
392
Normal
-0.2
391
Tumor
-0.2
285
Tumor
-0.2
125
Tumor
-0.2
412
Normal
-0.2
884
Normal
-0.2
448
Normal
-0.2
571
Tumor
-0.2
816
Normal
-0.2
497
Tumor
-0.2
435
Tumor
-0.2
913
Tumor
-0.2
352
Normal
-0.2
212
Normal
-0.2
1032
Normal
-0.2
228
Normal
-0.2
1031
Tumor
-0.2
462
Normal
-0.2
546
Normal
-0.2
984
Normal
-0.2
474
Normal
-0.2
396
Normal
-0.2
925
Tumor
-0.3
466
Normal
-0.3
1027
Tumor
-0.3
186
Normal
-0.3
368
Normal
-0.3
148
Normal
-0.3
554
Normal
-0.3
467
Tumor
-0.3
425
Tumor
-0.3
278
Normal
-0.3
214
Normal
-0.3
1043
Tumor
-0.3
387
Tumor
-0.3
868
Normal
-0.3
162
Normal
-0.3
464
Normal
-0.3
924
Normal
-0.3
172
Normal
-0.3
745
Tumor
-0.3
484
Normal
-0.3
716
Normal
-0.3
218
Normal
-0.3
912
Normal
-0.3
882
Normal
-0.3
284
Normal
-0.3
968
Normal
-0.3
422
Normal
-0.3
664
Normal
-0.3
424
Normal
-0.3
755
Tumor
-0.3
514
Normal
-0.3
558
Normal
-0.3
534
Normal
-0.3
662
Normal
-0.3
666
Normal
-0.3
328
Normal
-0.4
1046
Normal
-0.4
414
Normal
-0.4
956
Normal
-0.4
818
Normal
-0.4
221
Tumor
-0.4
852
Normal
-0.4
964
Normal
-0.4
388
Normal
-0.4
341
Tumor
-0.4
1021
Tumor
-0.4
344
Normal
-0.4
954
Normal
-0.4
445
Tumor
-0.4
737
Tumor
-0.4
262
Normal
-0.4
147
Tumor
-0.4
217
Tumor
-0.4
742
Normal
-0.4
878
Normal
-0.4
376
Normal
-0.4
443
Tumor
-0.4
918
Normal
-0.4
138
Normal
-0.4
366
Normal
-0.4
413
Tumor
-0.4
756
Normal
-0.4
1016
Normal
-0.4
978
Normal
-0.4
686
Normal
-0.4
136
Normal
-0.4
124
Normal
-0.5
132
Normal
-0.5
983
Tumor
-0.5
1042
Normal
-0.5
617
Tumor
-0.5
456
Normal
-0.5
356
Normal
-0.5
618
Normal
-0.5
494
Normal
-0.5
434
Normal
-0.5
446
Normal
-0.5
528
Normal
-0.5
272
Normal
-0.5
1022
Normal
-0.5
123
Tumor
-0.5
112
Tumor
-0.5
526
Normal
-0.5
342
Normal
-0.5
864
Normal
-0.5
648
Normal
-0.5
944
Normal
-0.5
937
Tumor
-0.5
824
Normal
-0.5
113
Tumor
-0.5
922
Normal
-0.5
332
Normal
-0.5
786
Normal
-0.5
862
Normal
-0.5
314
Normal
-0.5
482
Normal
-0.5
698
Normal
-0.5
1014
Normal
-0.5
1028
Normal
-0.5
222
Normal
-0.5
628
Normal
-0.6
567
Tumor
-0.6
914
Normal
-0.6
866
Normal
-0.6
428
Normal
-0.6
426
Normal
-0.6
696
Normal
-0.6
926
Normal
-0.6
258
Normal
-0.6
298
Normal
-0.6
142
Normal
-0.6
722
Normal
-0.6
518
Normal
-0.6
468
Normal
-0.6
951
Tumor
-0.6
196
Normal
-0.6
642
Normal
-0.6
724
Normal
-0.6
714
Normal
-0.6
938
Normal
-0.6
488
Normal
-0.6
358
Normal
-0.6
858
Normal
-0.6
728
Normal
-0.6
873
Tumor
-0.6
111
Normal
-0.6
636
Normal
-0.6
952
Normal
-0.7
452
Normal
-0.7
267
Tumor
-0.7
738
Normal
-0.7
721
Tumor
-0.7
232
Normal
-0.7
1026
Normal
-0.7
723
Tumor
-0.7
564
Normal
-0.7
286
Normal
-0.7
436
Normal
-0.7
271
Tumor
-0.7
487
Tumor
-0.7
481
Tumor
-0.7
966
Normal
-0.7
778
Normal
-0.7
568
Normal
-0.8
432
Normal
-0.8
663
Tumor
-0.8
114
Normal
-0.8
815
Tumor
-0.8
746
Normal
-0.8
661
Tumor
-0.9
128
Normal
-0.9
865
Tumor
-0.9
616
Normal
-1.0
851
Tumor
-1.0
955
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
