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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NPL is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
206.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
108.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
77.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
64.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
61.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
51.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
48.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
44.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
42.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
38.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
35.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
34.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
31.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
29.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
28.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
28.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
28.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
27.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
27.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
25.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
25.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
24.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
23.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
23.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
22.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
22.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
19.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
19.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
18.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
18.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
18.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
18.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
18.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
17.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
16.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
16.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
15.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
15.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
13.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
12.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
12.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
11.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
10.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
8.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
7.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
6.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
5.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
5.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
5.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
4.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
4.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
2.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
2.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
2.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
2.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NPL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.1
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
209.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
150.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
124.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
82.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
63.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
56.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
54.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
53.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
51.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
49.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
48.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
46.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
42.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
39.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
38.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
38.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
36.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
35.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
35.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
34.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
33.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
30.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
28.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
25.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
24.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
23.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
23.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
22.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
22.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
18.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
16.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
16.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
16.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
15.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
14.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
14.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
12.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
12.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
10.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
7.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
7.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
5.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
5.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
5.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
5.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
4.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
3.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
3.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
3.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
3.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
2.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
1.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
1.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
953
Tumor
2.7
957
Tumor
2.1
1027
Tumor
1.9
257
Tumor
1.8
125
Tumor
1.6
724
Normal
1.6
537
Tumor
1.6
191
Tumor
1.4
451
Tumor
1.4
211
Tumor
1.3
147
Tumor
1.3
857
Tumor
1.2
661
Tumor
1.2
533
Tumor
1.1
527
Tumor
1.1
557
Tumor
1.0
715
Tumor
1.0
525
Tumor
1.0
363
Tumor
0.9
313
Tumor
0.9
978
Normal
0.7
343
Tumor
0.6
851
Tumor
0.6
145
Tumor
0.6
492
Normal
0.6
213
Tumor
0.5
498
Normal
0.5
524
Normal
0.5
415
Tumor
0.5
817
Tumor
0.5
224
Normal
0.5
467
Tumor
0.4
538
Normal
0.4
391
Tumor
0.4
823
Tumor
0.4
954
Normal
0.4
434
Normal
0.4
535
Tumor
0.4
686
Normal
0.4
914
Normal
0.4
491
Tumor
0.4
432
Normal
0.4
124
Normal
0.3
745
Tumor
0.3
926
Normal
0.3
283
Tumor
0.3
867
Tumor
0.3
262
Normal
0.3
984
Normal
0.3
1028
Normal
0.3
514
Normal
0.3
427
Tumor
0.3
917
Tumor
0.3
396
Normal
0.2
721
Tumor
0.2
528
Normal
0.2
385
Tumor
0.2
713
Tumor
0.2
135
Tumor
0.2
778
Normal
0.2
392
Normal
0.2
697
Tumor
0.2
195
Tumor
0.2
311
Tumor
0.2
352
Normal
0.2
518
Normal
0.2
356
Normal
0.2
716
Normal
0.1
286
Normal
0.1
364
Normal
0.1
526
Normal
0.1
918
Normal
0.1
217
Tumor
0.1
362
Normal
0.1
111
Normal
0.1
672
Normal
0.1
714
Normal
0.1
444
Normal
0.1
126
Normal
0.1
141
Tumor
0.1
536
Normal
0.1
1046
Normal
0.1
966
Normal
0.1
666
Normal
0.1
558
Normal
0.0
468
Normal
0.0
187
Tumor
0.0
1045
Tumor
0.0
573
Tumor
0.0
212
Normal
0.0
142
Normal
0.0
478
Normal
0.0
742
Normal
0.0
384
Normal
0.0
272
Normal
0.0
421
Tumor
0.0
344
Normal
0.0
332
Normal
0.0
664
Normal
0.0
696
Normal
0.0
366
Normal
0.0
858
Normal
0.0
192
Normal
0.0
114
Normal
0.0
662
Normal
0.0
648
Normal
0.0
916
Normal
0.0
1031
Tumor
0.0
471
Tumor
0.0
221
Tumor
0.0
423
Tumor
0.0
564
Normal
0.0
477
Tumor
0.0
218
Normal
0.0
312
Normal
0.0
456
Normal
0.0
188
Normal
0.0
863
Tumor
0.0
628
Normal
0.0
866
Normal
0.0
365
Tumor
0.0
136
Normal
0.0
884
Normal
-0.1
443
Tumor
-0.1
943
Tumor
-0.1
358
Normal
-0.1
814
Normal
-0.1
146
Normal
-0.1
138
Normal
-0.1
824
Normal
-0.1
424
Normal
-0.1
864
Normal
-0.1
938
Normal
-0.1
258
Normal
-0.1
912
Normal
-0.1
375
Tumor
-0.1
663
Tumor
-0.1
394
Normal
-0.1
1026
Normal
-0.1
868
Normal
-0.1
494
Normal
-0.1
162
Normal
-0.1
314
Normal
-0.1
944
Normal
-0.1
567
Tumor
-0.1
481
Tumor
-0.1
388
Normal
-0.1
955
Tumor
-0.1
617
Tumor
-0.1
328
Normal
-0.1
214
Normal
-0.1
298
Normal
-0.1
1014
Normal
-0.1
818
Normal
-0.1
883
Tumor
-0.1
671
Tumor
-0.1
922
Normal
-0.1
196
Normal
-0.1
574
Normal
-0.1
261
Tumor
-0.1
132
Normal
-0.1
446
Normal
-0.1
964
Normal
-0.1
534
Normal
-0.2
482
Normal
-0.2
976
Normal
-0.2
952
Normal
-0.2
728
Normal
-0.2
563
Tumor
-0.2
268
Normal
-0.2
447
Tumor
-0.2
1042
Normal
-0.2
416
Normal
-0.2
464
Normal
-0.2
386
Normal
-0.2
956
Normal
-0.2
722
Normal
-0.2
1044
Normal
-0.2
977
Tumor
-0.2
975
Tumor
-0.2
414
Normal
-0.2
698
Normal
-0.2
546
Normal
-0.2
921
Tumor
-0.2
297
Tumor
-0.2
483
Tumor
-0.2
968
Normal
-0.2
568
Normal
-0.2
278
Normal
-0.2
493
Tumor
-0.2
185
Tumor
-0.2
756
Normal
-0.2
172
Normal
-0.2
572
Normal
-0.2
223
Tumor
-0.2
148
Normal
-0.2
665
Tumor
-0.2
913
Tumor
-0.2
222
Normal
-0.2
777
Tumor
-0.2
472
Normal
-0.2
861
Tumor
-0.2
474
Normal
-0.2
436
Normal
-0.3
983
Tumor
-0.3
412
Normal
-0.3
433
Tumor
-0.3
395
Tumor
-0.3
852
Normal
-0.3
186
Normal
-0.3
1022
Normal
-0.3
878
Normal
-0.3
376
Normal
-0.3
354
Normal
-0.3
925
Tumor
-0.3
127
Tumor
-0.3
383
Tumor
-0.3
355
Tumor
-0.3
1043
Tumor
-0.3
738
Normal
-0.3
924
Normal
-0.3
284
Normal
-0.3
361
Tumor
-0.3
554
Normal
-0.4
137
Tumor
-0.4
228
Normal
-0.4
232
Normal
-0.4
267
Tumor
-0.4
1041
Tumor
-0.4
128
Normal
-0.4
387
Tumor
-0.4
874
Normal
-0.4
271
Tumor
-0.4
723
Tumor
-0.4
882
Normal
-0.4
616
Normal
-0.4
911
Tumor
-0.4
1032
Normal
-0.4
473
Tumor
-0.4
448
Normal
-0.4
862
Normal
-0.4
113
Tumor
-0.5
422
Normal
-0.5
357
Tumor
-0.5
227
Tumor
-0.5
466
Normal
-0.5
463
Tumor
-0.5
958
Normal
-0.5
455
Tumor
-0.5
428
Normal
-0.5
516
Normal
-0.5
813
Tumor
-0.5
923
Tumor
-0.5
161
Tumor
-0.5
484
Normal
-0.5
877
Tumor
-0.5
353
Tumor
-0.5
744
Normal
-0.5
523
Tumor
-0.5
636
Normal
-0.5
461
Tumor
-0.5
368
Normal
-0.5
426
Normal
-0.5
951
Tumor
-0.5
517
Tumor
-0.6
786
Normal
-0.6
413
Tumor
-0.6
685
Tumor
-0.6
915
Tumor
-0.6
553
Tumor
-0.6
865
Tumor
-0.6
515
Tumor
-0.6
425
Tumor
-0.6
618
Normal
-0.6
967
Tumor
-0.6
982
Normal
-0.6
452
Normal
-0.6
1016
Normal
-0.6
571
Tumor
-0.6
873
Tumor
-0.6
642
Normal
-0.7
1021
Tumor
-0.7
327
Tumor
-0.7
112
Tumor
-0.7
431
Tumor
-0.7
627
Tumor
-0.7
488
Normal
-0.7
815
Tumor
-0.7
755
Tumor
-0.7
1025
Tumor
-0.7
1015
Tumor
-0.7
331
Tumor
-0.8
746
Normal
-0.8
462
Normal
-0.8
277
Tumor
-0.8
123
Tumor
-0.8
615
Tumor
-0.8
647
Tumor
-0.8
497
Tumor
-0.8
881
Tumor
-0.8
513
Tumor
-0.9
445
Tumor
-0.9
816
Normal
-0.9
727
Tumor
-0.9
285
Tumor
-0.9
545
Tumor
-0.9
965
Tumor
-0.9
785
Tumor
-1.0
231
Tumor
-1.0
411
Tumor
-1.0
393
Tumor
-1.0
367
Tumor
-1.0
351
Tumor
-1.0
981
Tumor
-1.0
131
Tumor
-1.1
641
Tumor
-1.1
342
Normal
-1.1
741
Tumor
-1.1
1013
Tumor
-1.2
937
Tumor
-1.3
435
Tumor
-1.3
635
Tumor
-1.3
465
Tumor
-1.4
487
Tumor
-1.4
171
Tumor
-1.4
963
Tumor
-1.4
695
Tumor
-1.4
737
Tumor
-1.5
341
Tumor
-1.5
743
Tumor
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
