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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DHX9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
61.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
56.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
54.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
50.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
49.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
46.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
43.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
43.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
42.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
42.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
42.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
41.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
40.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
39.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
38.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
37.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
36.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
36.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
35.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
35.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
32.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
32.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
31.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
29.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
28.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
28.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
27.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
27.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
25.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
24.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
24.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
24.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
24.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
24.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
23.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
23.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
23.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
22.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
22.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
22.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
22.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
21.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
21.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
19.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
19.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
19.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
19.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
19.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
18.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
18.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
18.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
17.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
17.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
17.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
17.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
16.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
16.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
16.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
15.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
14.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
14.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
14.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
13.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
13.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
11.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
8.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
7.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
1.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DHX9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
28.1
Number of samples
231
Samples
Sample
Description
TPM
DO45275
0 years, male, NA, stage:3, dead, 10 days
70.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
68.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
68.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
67.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
59.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
58.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
56.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
55.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
53.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
52.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
50.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
50.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
49.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
49.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
47.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
46.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
46.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
45.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
45.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
44.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
43.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
43.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
43.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
43.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
41.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
41.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
41.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
40.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
39.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
39.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
39.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
38.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
38.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
37.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
37.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
37.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
36.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
36.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
36.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
36.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
36.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
36.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
36.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
35.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
35.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
34.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
34.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
34.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
34.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
33.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
33.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
33.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
32.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
32.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
32.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
32.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
32.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
32.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
31.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
31.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
31.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
31.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
31.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
31.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
30.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
30.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
30.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
30.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
30.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
30.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
29.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
29.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
29.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
29.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
28.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
28.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
28.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
28.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
28.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
27.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
27.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
27.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
27.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
27.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
26.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
26.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
26.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
26.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
26.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
26.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
26.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
25.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
25.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
25.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
25.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
25.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
24.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
24.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
24.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
23.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
23.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
23.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
23.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
23.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
23.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
23.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
22.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
22.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
22.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
22.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
22.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
22.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
21.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
21.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
20.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
20.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
20.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
20.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
20.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.2
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
19.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
19.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
19.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
18.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
18.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
17.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
16.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
16.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
16.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
15.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
14.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
12.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
10.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.9
131
Tumor
0.9
877
Tumor
0.7
425
Tumor
0.7
523
Tumor
0.6
977
Tumor
0.6
965
Tumor
0.6
463
Tumor
0.6
427
Tumor
0.6
331
Tumor
0.5
957
Tumor
0.5
967
Tumor
0.5
411
Tumor
0.5
351
Tumor
0.5
271
Tumor
0.5
285
Tumor
0.5
277
Tumor
0.5
951
Tumor
0.5
517
Tumor
0.5
865
Tumor
0.5
123
Tumor
0.5
1031
Tumor
0.5
817
Tumor
0.5
881
Tumor
0.5
443
Tumor
0.5
545
Tumor
0.5
1021
Tumor
0.5
635
Tumor
0.4
497
Tumor
0.4
661
Tumor
0.4
313
Tumor
0.4
647
Tumor
0.4
975
Tumor
0.4
227
Tumor
0.4
357
Tumor
0.4
112
Tumor
0.4
385
Tumor
0.4
983
Tumor
0.4
671
Tumor
0.4
125
Tumor
0.4
435
Tumor
0.4
355
Tumor
0.3
367
Tumor
0.3
221
Tumor
0.3
445
Tumor
0.3
431
Tumor
0.3
343
Tumor
0.3
665
Tumor
0.3
724
Normal
0.3
641
Tumor
0.3
135
Tumor
0.3
413
Tumor
0.3
1013
Tumor
0.3
715
Tumor
0.3
211
Tumor
0.3
537
Tumor
0.3
777
Tumor
0.3
943
Tumor
0.3
447
Tumor
0.3
467
Tumor
0.3
473
Tumor
0.2
171
Tumor
0.2
1025
Tumor
0.2
923
Tumor
0.2
393
Tumor
0.2
921
Tumor
0.2
573
Tumor
0.2
471
Tumor
0.2
527
Tumor
0.2
883
Tumor
0.2
433
Tumor
0.2
571
Tumor
0.2
533
Tumor
0.2
267
Tumor
0.2
727
Tumor
0.2
213
Tumor
0.2
535
Tumor
0.2
813
Tumor
0.2
737
Tumor
0.2
491
Tumor
0.2
1041
Tumor
0.2
553
Tumor
0.2
297
Tumor
0.2
685
Tumor
0.2
161
Tumor
0.2
455
Tumor
0.2
697
Tumor
0.2
557
Tumor
0.2
191
Tumor
0.2
185
Tumor
0.2
187
Tumor
0.2
815
Tumor
0.2
257
Tumor
0.2
953
Tumor
0.2
461
Tumor
0.1
785
Tumor
0.1
867
Tumor
0.1
814
Normal
0.1
493
Tumor
0.1
375
Tumor
0.1
127
Tumor
0.1
487
Tumor
0.1
217
Tumor
0.1
567
Tumor
0.1
283
Tumor
0.1
141
Tumor
0.1
147
Tumor
0.1
423
Tumor
0.1
695
Tumor
0.1
341
Tumor
0.1
741
Tumor
0.1
231
Tumor
0.1
721
Tumor
0.1
917
Tumor
0.1
483
Tumor
0.1
387
Tumor
0.1
663
Tumor
0.1
363
Tumor
0.1
391
Tumor
0.0
477
Tumor
0.0
515
Tumor
0.0
963
Tumor
0.0
873
Tumor
0.0
563
Tumor
0.0
421
Tumor
0.0
713
Tumor
0.0
451
Tumor
0.0
113
Tumor
0.0
1043
Tumor
0.0
525
Tumor
0.0
1027
Tumor
0.0
361
Tumor
0.0
395
Tumor
0.0
261
Tumor
0.0
851
Tumor
0.0
383
Tumor
0.0
465
Tumor
0.0
415
Tumor
0.0
823
Tumor
0.0
352
Normal
0.0
192
Normal
0.0
861
Tumor
0.0
937
Tumor
0.0
913
Tumor
0.0
444
Normal
-0.1
384
Normal
-0.1
863
Tumor
-0.1
145
Tumor
-0.1
314
Normal
-0.1
742
Normal
-0.1
353
Tumor
-0.1
534
Normal
-0.1
332
Normal
-0.1
195
Tumor
-0.1
311
Tumor
-0.1
223
Tumor
-0.1
137
Tumor
-0.1
513
Tumor
-0.1
481
Tumor
-0.1
196
Normal
-0.1
426
Normal
-0.1
222
Normal
-0.1
857
Tumor
-0.1
744
Normal
-0.1
464
Normal
-0.1
755
Tumor
-0.1
218
Normal
-0.1
327
Tumor
-0.1
365
Tumor
-0.1
376
Normal
-0.1
124
Normal
-0.1
915
Tumor
-0.1
268
Normal
-0.1
1015
Tumor
-0.1
414
Normal
-0.1
342
Normal
-0.1
524
Normal
-0.1
664
Normal
-0.1
824
Normal
-0.1
617
Tumor
-0.1
615
Tumor
-0.1
298
Normal
-0.1
428
Normal
-0.1
911
Tumor
-0.1
964
Normal
-0.1
488
Normal
-0.1
344
Normal
-0.1
498
Normal
-0.1
955
Tumor
-0.1
858
Normal
-0.1
981
Tumor
-0.1
484
Normal
-0.1
446
Normal
-0.1
278
Normal
-0.1
186
Normal
-0.1
354
Normal
-0.1
526
Normal
-0.1
358
Normal
-0.1
434
Normal
-0.1
686
Normal
-0.1
666
Normal
-0.1
394
Normal
-0.1
516
Normal
-0.1
142
Normal
-0.2
368
Normal
-0.2
356
Normal
-0.2
518
Normal
-0.2
478
Normal
-0.2
162
Normal
-0.2
878
Normal
-0.2
396
Normal
-0.2
966
Normal
-0.2
648
Normal
-0.2
925
Tumor
-0.2
1045
Tumor
-0.2
148
Normal
-0.2
422
Normal
-0.2
738
Normal
-0.2
436
Normal
-0.2
662
Normal
-0.2
362
Normal
-0.2
492
Normal
-0.2
984
Normal
-0.2
412
Normal
-0.2
462
Normal
-0.2
366
Normal
-0.2
482
Normal
-0.2
954
Normal
-0.2
514
Normal
-0.2
388
Normal
-0.2
114
Normal
-0.2
232
Normal
-0.2
786
Normal
-0.2
636
Normal
-0.2
472
Normal
-0.2
146
Normal
-0.2
1016
Normal
-0.2
456
Normal
-0.2
212
Normal
-0.2
224
Normal
-0.2
126
Normal
-0.2
1014
Normal
-0.2
432
Normal
-0.2
392
Normal
-0.2
546
Normal
-0.2
568
Normal
-0.2
818
Normal
-0.2
284
Normal
-0.2
172
Normal
-0.2
286
Normal
-0.2
111
Normal
-0.2
723
Tumor
-0.2
554
Normal
-0.2
452
Normal
-0.2
386
Normal
-0.2
424
Normal
-0.2
328
Normal
-0.2
466
Normal
-0.2
128
Normal
-0.2
882
Normal
-0.2
924
Normal
-0.2
364
Normal
-0.2
468
Normal
-0.2
618
Normal
-0.2
958
Normal
-0.2
912
Normal
-0.2
138
Normal
-0.2
746
Normal
-0.2
944
Normal
-0.2
938
Normal
-0.2
968
Normal
-0.2
132
Normal
-0.2
538
Normal
-0.2
574
Normal
-0.2
262
Normal
-0.2
258
Normal
-0.2
312
Normal
-0.2
494
Normal
-0.2
756
Normal
-0.2
816
Normal
-0.2
572
Normal
-0.2
188
Normal
-0.2
884
Normal
-0.2
528
Normal
-0.2
228
Normal
-0.2
214
Normal
-0.2
672
Normal
-0.2
416
Normal
-0.2
978
Normal
-0.2
628
Normal
-0.2
1028
Normal
-0.2
448
Normal
-0.2
564
Normal
-0.2
1046
Normal
-0.2
616
Normal
-0.2
136
Normal
-0.2
722
Normal
-0.2
728
Normal
-0.2
862
Normal
-0.2
474
Normal
-0.2
536
Normal
-0.2
745
Tumor
-0.2
976
Normal
-0.2
778
Normal
-0.2
868
Normal
-0.3
696
Normal
-0.3
558
Normal
-0.3
916
Normal
-0.3
866
Normal
-0.3
716
Normal
-0.3
922
Normal
-0.3
1032
Normal
-0.3
914
Normal
-0.3
852
Normal
-0.3
272
Normal
-0.3
874
Normal
-0.3
698
Normal
-0.3
864
Normal
-0.3
982
Normal
-0.3
926
Normal
-0.3
714
Normal
-0.3
956
Normal
-0.3
952
Normal
-0.3
627
Tumor
-0.3
1044
Normal
-0.3
1026
Normal
-0.3
642
Normal
-0.3
918
Normal
-0.3
1042
Normal
-0.4
1022
Normal
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
