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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
286.8
nTPM
FANTOM5:
451.2
Scaled Tags Per Million
Pig:
337.5
nTPM
Allen mouse:
3.2
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
286.8
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 190.7
1984
Male, age 76, both hemispheres
220.8
2090
Male, age 80, both hemispheres
191.2
2301
Female, age 85, both hemispheres
183.9
2188
Female, age 91, both hemispheres
166.9
Dorsal cochlear nucleus nTPM: 214.6
2058
Male, age 76, both hemispheres
303.0
2370
Male, age 61, both hemispheres
241.9
2378
Male, age 80, both hemispheres
211.4
2187
Female, age 91, both hemispheres
169.8
2802
Male, age 74, right hemisphere
146.8
Dorsal tegmental nucleus nTPM: 267.1
2358
Male, age 61, both hemispheres
320.4
1936
Male, age 76, left hemisphere
304.7
2083
Male, age 80, both hemispheres
249.6
2326
Male, age 74, both hemispheres
193.8
Dorsolateral tegmental area nTPM: 286.8
2360
Male, age 74, both hemispheres
387.9
2141
Male, age 76, both hemispheres
271.4
2654
Male, age 80, both hemispheres
260.1
2751
Female, age 85, both hemispheres
259.0
2337
Male, age 61, both hemispheres
255.7
Kolliker-Fuse nucleus nTPM: 267.7
2315
Male, age 76, right hemisphere
454.6
2163
Male, age 80, both hemispheres
211.7
2793
Female, age 91, left hemisphere
136.7
Lateral lemniscal nuclei nTPM: 178.9
2746
Female, age 85, left hemisphere
256.2
2169
Male, age 76, both hemispheres
208.1
2036
Male, age 80, both hemispheres
194.6
2453
Male, age 74, right hemisphere
123.3
2320
Female, age 91, left hemisphere
112.1
Lateral parabrachial nucleus nTPM: 275.5
2139
Female, age 85, right hemisphere
368.9
2792
Male, age 76, both hemispheres
302.0
2013
Male, age 80, both hemispheres
269.7
2790
Male, age 61, both hemispheres
161.6
Lateral vestibular nucleus nTPM: 254.9
2184
Male, age 76, both hemispheres
260.7
2311
Male, age 80, both hemispheres
249.2
Locus coeruleus nTPM: 229.9
2123
Female, age 91, both hemispheres
318.0
2317
Female, age 72, unknown
273.5
1980
Male, age 76, both hemispheres
264.0
2788
Male, age 74, unknown
237.7
2014
Male, age 55, unknown
212.8
2162
Male, age 80, both hemispheres
164.9
2720
Male, age 74, both hemispheres
138.5
Medial parabrachial nucleus nTPM: 227.6
2786
Male, age 76, both hemispheres
244.6
2463
Female, age 85, right hemisphere
243.7
2170
Female, age 91, both hemispheres
227.3
2156
Male, age 61, both hemispheres
223.6
2854
Male, age 80, both hemispheres
198.7
Medial periolivary nuclei nTPM: 199.5
2791
Male, age 74, right hemisphere
266.1
2063
Male, age 76, both hemispheres
236.2
2171
Female, age 85, both hemispheres
208.4
2081
Male, age 80, both hemispheres
168.6
2458
Female, age 91, both hemispheres
118.2
Motor facial nucleus nTPM: 178.8
2062
Male, age 76, both hemispheres
268.5
2795
Female, age 91, both hemispheres
215.1
2365
Male, age 74, right hemisphere
199.0
2126
Male, age 61, both hemispheres
178.1
2697
Female, age 85, both hemispheres
118.5
2327
Male, age 80, both hemispheres
93.6
Motor trigeminal nucleus nTPM: 177.0
2309
Male, age 76, both hemispheres
256.7
2335
Male, age 61, both hemispheres
251.3
2079
Male, age 80, both hemispheres
181.5
2321
Female, age 91, both hemispheres
98.5
2560
Male, age 74, both hemispheres
97.2
Nuclei of the trapezoid body nTPM: 201.4
1983
Male, age 76, both hemispheres
286.6
2735
Female, age 85, both hemispheres
217.6
2368
Female, age 91, both hemispheres
175.7
2159
Male, age 61, both hemispheres
173.8
2166
Male, age 80, both hemispheres
153.1
Nucleus raphe magnus nTPM: 188.2
2051
Male, age 76, both hemispheres
300.2
2455
Male, age 74, both hemispheres
255.3
2160
Male, age 61, both hemispheres
189.6
2328
Male, age 80, both hemispheres
154.0
2172
Female, age 85, both hemispheres
122.3
2459
Female, age 91, both hemispheres
108.0
Paramedian reticular nucleus nTPM: 248.1
2057
Male, age 80, both hemispheres
304.0
2052
Male, age 76, both hemispheres
256.8
2050
Female, age 85, both hemispheres
216.3
2313
Male, age 61, both hemispheres
215.2
Pedunculopontine tegmental nucleus nTPM: 248.4
2334
Male, age 80, both hemispheres
260.4
2338
Male, age 61, both hemispheres
255.5
1921
Female, age 85, both hemispheres
229.1
Pontine nuclei nTPM: 172.5
1968
Male, age 76, left hemisphere
253.6
1863
Male, age 55, unknown
238.0
2787
Female, age 85, both hemispheres
215.1
2115
Male, age 80, left hemisphere
172.1
2319
Female, age 91, both hemispheres
146.3
2727
Male, age 61, right hemisphere
140.0
2109
Female, age 72, unknown
135.3
2454
Male, age 74, left hemisphere
79.7
Pontine raphe nucleus nTPM: 230.6
2853
Male, age 76, midline
251.0
2122
Female, age 85, midline
210.2
Posteroventral cochlear nucleus nTPM: 221.2
2070
Male, age 76, both hemispheres
285.8
2371
Male, age 61, both hemispheres
262.1
2752
Female, age 85, both hemispheres
200.4
2341
Male, age 80, both hemispheres
179.8
2135
Female, age 91, both hemispheres
177.9
Principal sensory trigeminal nucleus nTPM: 179.7
2324
Male, age 76, both hemispheres
273.6
2158
Male, age 61, both hemispheres
185.2
2008
Male, age 80, left hemisphere
152.3
2367
Female, age 91, left hemisphere
107.7
Reticular pontine nucleus, caudal nTPM: 151.4
2092
Male, age 76, both hemispheres
268.9
2332
Male, age 80, right hemisphere
137.8
2457
Female, age 91, both hemispheres
117.1
2559
Male, age 74, both hemispheres
81.8
Reticular pontine nucleus, oral nTPM: 198.2
1939
Male, age 80, both hemispheres
280.1
2167
Male, age 76, both hemispheres
250.7
2012
Female, age 85, both hemispheres
248.0
2366
Female, age 91, both hemispheres
147.2
2361
Male, age 74, both hemispheres
64.8
Reticulotegmental nucleus nTPM: 193.6
2333
Male, age 80, both hemispheres
246.5
2325
Male, age 76, both hemispheres
239.7
2322
Female, age 91, both hemispheres
165.9
2452
Male, age 74, both hemispheres
122.2
Spinal trigeminal nucleus, oral nTPM: 191.7
1978
Male, age 76, both hemispheres
241.2
2737
Female, age 85, both hemispheres
200.6
2164
Male, age 80, both hemispheres
133.3
Subcoeruleus area nTPM: 211.9
2369
Female, age 85, left hemisphere
269.7
1958
Male, age 80, both hemispheres
234.3
2323
Female, age 91, left hemisphere
208.6
2089
Male, age 76, left hemisphere
181.4
2451
Male, age 74, both hemispheres
165.7
Superior olive nTPM: 182.8
2364
Male, age 74, right hemisphere
269.6
2020
Male, age 76, both hemispheres
221.9
1875
Female, age 85, both hemispheres
169.3
2329
Male, age 80, right hemisphere
131.2
2561
Female, age 91, both hemispheres
122.1
Ventral periolivary nuclei nTPM: 188.3
2130
Female, age 85, both hemispheres
249.4
2023
Male, age 76, both hemispheres
221.5
2165
Male, age 80, both hemispheres
198.3
2794
Female, age 91, left hemisphere
84.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 194.8
2359
Male, age 61, both hemispheres
238.2
1959
Male, age 76, both hemispheres
233.2
2840
Female, age 85, both hemispheres
221.2
2161
Male, age 80, both hemispheres
172.3
2449
Male, age 74, both hemispheres
162.6
2456
Female, age 91, both hemispheres
141.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
337.5
Pig sample
Sample description
nTPM
Pons nTPM: 337.5
Samples: 4
Max nTPM: 399.0
Min nTPM: 301.8
Sample A
Female
301.8
Sample B
Female
312.2
Sample C
Male
399.0
Sample D
Male
336.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.