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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
145.2
nTPM
HPA Brain:
259.3
nTPM
GTEx:
145.2
nTPM
FANTOM5:
486.4
Scaled Tags Per Million
Pig:
273.5
nTPM
Mouse:
29.4
nTPM
Allen mouse:
0.9
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody CAB025798
Glial cells
Not detected
Neuronal cells
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
259.3
Sample id
Sample description
nTPM
Hippocampus nTPM: 259.3
2529
Female, age 94, left hemisphere
347.9
1911
Female, age 85, right hemisphere
304.1
2148
Female, age 91, left hemisphere
281.5
1898
Male, age 80, left hemisphere
245.6
2621
Female, age 67, right hemisphere
189.2
1855
Male, age 76, left hemisphere
187.5
Dentate gyrus nTPM: 220.4
2528
Male, age 74, both hemispheres
403.4
2530
Female, age 94, left hemisphere
219.1
2246
Female, age 85, both hemispheres
215.7
1927
Female, age 91, both hemispheres
193.3
2010
Male, age 76, both hemispheres
158.1
2531
Female, age 67, both hemispheres
132.7
Entorhinal gyrus nTPM: 183.9
2117
Female, age 91, right hemisphere
359.0
1938
Female, age 85, left hemisphere
190.2
1787
Male, age 76, left hemisphere
175.3
2764
Male, age 80, right hemisphere
148.2
2686
Male, age 75, right hemisphere
120.0
2613
Female, age 94, left hemisphere
110.8
Hippocampus, CA1 nTPM: 220.5
2527
Male, age 74, both hemispheres
323.3
1873
Female, age 85, both hemispheres
260.4
2082
Female, age 91, right hemisphere
251.4
2045
Male, age 76, both hemispheres
142.5
2749
Male, age 80, left hemisphere
124.9
Hippocampus, CA2 nTPM: 248.2
2249
Male, age 74, both hemispheres
412.6
2113
Female, age 91, right hemisphere
276.3
1940
Female, age 85, left hemisphere
272.4
2437
Female, age 94, left hemisphere
216.2
1963
Male, age 80, left hemisphere
206.1
1892
Male, age 76, both hemispheres
105.5
Hippocampus, CA3 nTPM: 206.2
2436
Male, age 74, both hemispheres
287.2
2620
Female, age 94, left hemisphere
259.2
1891
Female, age 85, both hemispheres
258.4
2861
Female, age 67, both hemispheres
148.2
1867
Male, age 76, both hemispheres
147.1
2137
Male, age 80, left hemisphere
137.1
Parahippocampal cortex nTPM: 171.5
2692
Male, age 74, both hemispheres
217.4
1990
Female, age 91, right hemisphere
198.6
2250
Female, age 67, right hemisphere
196.3
2245
Female, age 91, both hemispheres
190.8
1933
Female, age 85, both hemispheres
178.9
2018
Male, age 76, both hemispheres
172.8
2622
Female, age 67, right hemisphere
164.4
1850
Male, age 80, both hemispheres
155.0
2532
Female, age 72, left hemisphere
123.3
2693
Female, age 94, both hemispheres
118.0
Perirhinal gyrus nTPM: 149.8
1794
Male, age 80, right hemisphere
171.4
1847
Female, age 91, left hemisphere
168.8
1841
Female, age 85, right hemisphere
162.7
2521
Female, age 94, right hemisphere
144.0
2848
Male, age 76, right hemisphere
101.9
Subiculum nTPM: 237.8
2729
Female, age 91, right hemisphere
345.2
2619
Male, age 74, both hemispheres
323.0
2438
Female, age 94, left hemisphere
220.2
1977
Female, age 85, both hemispheres
182.0
2042
Male, age 76, both hemispheres
181.1
1901
Male, age 80, both hemispheres
175.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
145.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 145.2
Samples: 197
Max nTPM: 477.5
Min nTPM: 25.3
Std nTPM: 72.3
Median nTPM: 138.4
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
477.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
373.4
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
365.6
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
322.8
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
306.6
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
294.9
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
292.0
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
287.5
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
283.3
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
280.5
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
265.7
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
265.2
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
261.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
258.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
254.2
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
248.1
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
240.9
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
240.3
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
237.6
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
236.8
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
233.0
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
230.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
230.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
229.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
227.4
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
224.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
223.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
222.3
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
219.0
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
218.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
217.2
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
216.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
215.9
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
208.0
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
207.9
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
205.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
203.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
203.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
202.7
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
198.1
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
197.9
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
196.0
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
195.2
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
194.9
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
194.2
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
194.2
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
193.5
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
193.3
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
190.8
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
188.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
187.2
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
186.8
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
186.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
185.8
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
184.4
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
182.2
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
182.2
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
181.7
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
180.6
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
180.1
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
179.9
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
177.2
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
176.2
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
174.0
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
173.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
173.0
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
172.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
170.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
169.9
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
168.2
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
164.0
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
161.5
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
158.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
157.5
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
157.3
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
155.7
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
155.4
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
155.2
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
155.2
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
154.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
153.0
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
151.6
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
149.9
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
149.6
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
148.3
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
146.3
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
145.8
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
145.2
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
144.6
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
144.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
144.0
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
142.7
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
142.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
142.3
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
142.0
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
141.6
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
140.7
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
140.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
138.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
138.2
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
135.7
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
132.8
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
132.3
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
129.3
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
129.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
128.7
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
127.7
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
126.2
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
124.4
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
123.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
123.5
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
122.4
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
120.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
118.3
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
118.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
117.8
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
117.2
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
116.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
116.0
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
115.2
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
114.7
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
113.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
110.5
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
107.1
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
106.6
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
105.8
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
105.3
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
105.3
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
104.2
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
103.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
101.6
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
101.1
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
99.5
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
98.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
97.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
97.6
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
97.0
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
96.8
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
96.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
96.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
95.6
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
94.7
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
93.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
92.6
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
92.6
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
92.2
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
91.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
91.5
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
89.8
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
88.7
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
88.2
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
86.5
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
86.2
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
85.9
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
84.8
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
84.0
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
83.9
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
82.9
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
82.1
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
81.7
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
80.4
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
79.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
77.5
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
76.5
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
75.2
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
74.2
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
73.3
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
71.6
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
71.4
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
71.2
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
70.1
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
69.7
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
66.6
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
66.4
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
65.8
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
64.6
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
61.1
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
60.5
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
60.3
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
60.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
59.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
58.3
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
57.6
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
57.4
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
55.7
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
55.0
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
53.6
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
50.2
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
49.8
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
48.8
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
46.4
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
42.0
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
42.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
34.9
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
28.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
25.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
25.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
29.4
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 26.2
Samples: 4
Max nTPM: 38.3
Min nTPM: 15.2
Sample A
Male
18.3
Sample B
Male
15.2
Sample C
Female
38.3
Sample D
Female
33.0
Hippocampal formation nTPM: 29.4
Samples: 4
Max nTPM: 36.9
Min nTPM: 23.1
Sample A
Male
31.1
Sample B
Male
23.1
Sample C
Female
26.6
Sample D
Female
36.9
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.