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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMYD5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
35.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
31.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
26.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
22.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
21.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
21.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
20.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
19.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
19.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
19.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
18.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
18.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
17.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
17.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
17.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
16.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
16.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
16.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
14.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
13.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
13.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
13.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
13.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
13.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
12.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
11.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
11.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
11.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
11.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
9.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
9.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
9.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
8.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
8.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
7.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
7.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
6.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
5.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
5.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
4.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SMYD5 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
35.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
32.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
30.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
29.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
21.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
20.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
19.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
19.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
18.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
18.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
18.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
16.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
16.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
15.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
15.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
14.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
14.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
14.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
13.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
13.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
12.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
12.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
10.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
10.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
9.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
8.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
8.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
7.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
7.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
7.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
6.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
6.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
6.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
6.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
6.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
6.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
5.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
5.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
5.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
5.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
567
Tumor
1.2
147
Tumor
1.1
413
Tumor
1.1
463
Tumor
1.1
285
Tumor
1.0
367
Tumor
0.9
965
Tumor
0.9
127
Tumor
0.9
473
Tumor
0.8
685
Tumor
0.8
435
Tumor
0.8
815
Tumor
0.8
671
Tumor
0.8
385
Tumor
0.7
391
Tumor
0.7
267
Tumor
0.7
125
Tumor
0.7
563
Tumor
0.7
925
Tumor
0.7
1015
Tumor
0.7
113
Tumor
0.7
445
Tumor
0.6
951
Tumor
0.6
351
Tumor
0.6
983
Tumor
0.6
363
Tumor
0.6
743
Tumor
0.6
745
Tumor
0.6
331
Tumor
0.5
477
Tumor
0.5
557
Tumor
0.5
221
Tumor
0.5
617
Tumor
0.5
573
Tumor
0.5
231
Tumor
0.5
124
Normal
0.5
571
Tumor
0.5
112
Tumor
0.5
131
Tumor
0.5
123
Tumor
0.5
535
Tumor
0.5
191
Tumor
0.5
967
Tumor
0.5
387
Tumor
0.5
661
Tumor
0.5
1021
Tumor
0.5
357
Tumor
0.4
877
Tumor
0.4
135
Tumor
0.4
1027
Tumor
0.4
171
Tumor
0.4
271
Tumor
0.4
327
Tumor
0.4
917
Tumor
0.4
283
Tumor
0.4
257
Tumor
0.4
1041
Tumor
0.4
427
Tumor
0.4
213
Tumor
0.4
1013
Tumor
0.4
641
Tumor
0.4
227
Tumor
0.3
375
Tumor
0.3
185
Tumor
0.3
873
Tumor
0.3
881
Tumor
0.3
715
Tumor
0.3
342
Normal
0.3
278
Normal
0.3
911
Tumor
0.3
146
Normal
0.3
195
Tumor
0.3
297
Tumor
0.3
188
Normal
0.3
493
Tumor
0.3
187
Tumor
0.3
755
Tumor
0.3
217
Tumor
0.3
724
Normal
0.3
145
Tumor
0.3
223
Tumor
0.3
963
Tumor
0.3
344
Normal
0.3
114
Normal
0.3
957
Tumor
0.3
136
Normal
0.3
383
Tumor
0.3
455
Tumor
0.3
161
Tumor
0.3
975
Tumor
0.3
162
Normal
0.2
186
Normal
0.2
663
Tumor
0.2
141
Tumor
0.2
977
Tumor
0.2
921
Tumor
0.2
647
Tumor
0.2
665
Tumor
0.2
741
Tumor
0.2
517
Tumor
0.2
311
Tumor
0.2
537
Tumor
0.2
361
Tumor
0.2
196
Normal
0.2
354
Normal
0.2
451
Tumor
0.2
268
Normal
0.2
272
Normal
0.2
218
Normal
0.2
744
Normal
0.2
222
Normal
0.2
883
Tumor
0.2
723
Tumor
0.2
126
Normal
0.2
332
Normal
0.2
953
Tumor
0.2
358
Normal
0.2
138
Normal
0.2
352
Normal
0.2
952
Normal
0.2
635
Tumor
0.2
1043
Tumor
0.1
172
Normal
0.1
313
Tumor
0.1
1031
Tumor
0.1
778
Normal
0.1
525
Tumor
0.1
817
Tumor
0.1
341
Tumor
0.1
456
Normal
0.1
756
Normal
0.1
465
Tumor
0.1
298
Normal
0.1
866
Normal
0.1
376
Normal
0.1
785
Tumor
0.1
111
Normal
0.1
128
Normal
0.1
386
Normal
0.1
424
Normal
0.1
394
Normal
0.1
813
Tumor
0.1
471
Tumor
0.1
192
Normal
0.1
314
Normal
0.1
786
Normal
0.1
737
Tumor
0.1
738
Normal
0.1
214
Normal
0.1
362
Normal
0.1
395
Tumor
0.1
368
Normal
0.1
467
Tumor
0.1
426
Normal
0.1
366
Normal
0.1
444
Normal
0.1
664
Normal
0.1
924
Normal
0.1
923
Tumor
0.1
148
Normal
0.1
1025
Tumor
0.1
884
Normal
0.0
742
Normal
0.0
478
Normal
0.0
818
Normal
0.0
384
Normal
0.0
943
Tumor
0.0
642
Normal
0.0
824
Normal
0.0
816
Normal
0.0
415
Tumor
0.0
483
Tumor
0.0
232
Normal
0.0
262
Normal
0.0
1044
Normal
0.0
916
Normal
0.0
874
Normal
0.0
554
Normal
0.0
746
Normal
0.0
258
Normal
0.0
981
Tumor
0.0
912
Normal
0.0
492
Normal
0.0
628
Normal
0.0
388
Normal
0.0
494
Normal
0.0
466
Normal
0.0
697
Tumor
0.0
132
Normal
0.0
422
Normal
0.0
392
Normal
0.0
536
Normal
0.0
662
Normal
0.0
312
Normal
0.0
672
Normal
0.0
568
Normal
0.0
858
Normal
0.0
353
Tumor
0.0
452
Normal
0.0
365
Tumor
0.0
937
Tumor
0.0
955
Tumor
0.0
224
Normal
0.0
414
Normal
0.0
865
Tumor
-0.1
966
Normal
-0.1
862
Normal
-0.1
618
Normal
-0.1
421
Tumor
-0.1
533
Tumor
-0.1
564
Normal
-0.1
574
Normal
-0.1
861
Tumor
-0.1
716
Normal
-0.1
648
Normal
-0.1
616
Normal
-0.1
938
Normal
-0.1
666
Normal
-0.1
636
Normal
-0.1
284
Normal
-0.1
436
Normal
-0.1
1026
Normal
-0.1
468
Normal
-0.1
1028
Normal
-0.1
434
Normal
-0.1
978
Normal
-0.1
498
Normal
-0.1
913
Tumor
-0.1
1032
Normal
-0.1
355
Tumor
-0.1
538
Normal
-0.1
696
Normal
-0.1
956
Normal
-0.1
447
Tumor
-0.1
851
Tumor
-0.1
474
Normal
-0.1
277
Tumor
-0.1
918
Normal
-0.1
464
Normal
-0.1
487
Tumor
-0.1
572
Normal
-0.1
926
Normal
-0.1
867
Tumor
-0.1
343
Tumor
-0.1
528
Normal
-0.1
864
Normal
-0.1
721
Tumor
-0.1
1022
Normal
-0.1
1046
Normal
-0.1
814
Normal
-0.1
261
Tumor
-0.1
448
Normal
-0.1
396
Normal
-0.1
142
Normal
-0.1
545
Tumor
-0.1
462
Normal
-0.2
534
Normal
-0.2
1014
Normal
-0.2
728
Normal
-0.2
698
Normal
-0.2
423
Tumor
-0.2
211
Tumor
-0.2
558
Normal
-0.2
695
Tumor
-0.2
446
Normal
-0.2
914
Normal
-0.2
286
Normal
-0.2
922
Normal
-0.2
488
Normal
-0.2
982
Normal
-0.2
1042
Normal
-0.2
482
Normal
-0.2
714
Normal
-0.2
976
Normal
-0.2
1016
Normal
-0.2
356
Normal
-0.2
686
Normal
-0.2
954
Normal
-0.2
882
Normal
-0.2
228
Normal
-0.2
411
Tumor
-0.2
868
Normal
-0.2
958
Normal
-0.2
878
Normal
-0.2
722
Normal
-0.2
546
Normal
-0.2
425
Tumor
-0.2
944
Normal
-0.2
428
Normal
-0.2
433
Tumor
-0.2
968
Normal
-0.2
432
Normal
-0.2
497
Tumor
-0.2
513
Tumor
-0.3
491
Tumor
-0.3
472
Normal
-0.3
416
Normal
-0.3
516
Normal
-0.3
518
Normal
-0.3
727
Tumor
-0.3
212
Normal
-0.3
523
Tumor
-0.3
328
Normal
-0.3
431
Tumor
-0.3
1045
Tumor
-0.3
393
Tumor
-0.3
915
Tumor
-0.3
863
Tumor
-0.3
852
Normal
-0.3
514
Normal
-0.3
443
Tumor
-0.3
964
Normal
-0.3
713
Tumor
-0.3
412
Normal
-0.3
984
Normal
-0.3
364
Normal
-0.3
484
Normal
-0.3
627
Tumor
-0.3
461
Tumor
-0.4
777
Tumor
-0.4
524
Normal
-0.4
526
Normal
-0.4
857
Tumor
-0.4
823
Tumor
-0.4
515
Tumor
-0.5
615
Tumor
-0.5
137
Tumor
-0.5
527
Tumor
-0.5
553
Tumor
-0.5
481
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
