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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LTV1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
36.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
29.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
28.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
28.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
28.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
26.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
24.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
24.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
24.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
23.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
23.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
22.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
22.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
21.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
20.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
20.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
20.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
19.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
18.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
18.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
18.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
15.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
15.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
14.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
14.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
14.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
14.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
14.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
14.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
14.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
13.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
12.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
12.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
12.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.7
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
11.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
11.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
10.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
10.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
10.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
9.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
9.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
9.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
9.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
8.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
8.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
7.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
6.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
6.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
6.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
6.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
4.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LTV1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.0
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
63.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
57.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
48.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
48.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
46.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
45.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
40.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
38.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
38.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
34.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
33.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
33.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
33.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
33.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
32.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
32.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
31.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
30.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
29.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
29.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
29.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
29.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
28.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
28.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
28.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
28.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
27.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
26.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
26.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
25.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
25.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
25.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
25.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
25.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
24.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
24.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
24.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
23.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
23.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
23.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
22.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
22.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
22.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
22.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
22.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
21.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
21.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
21.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
21.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
20.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
20.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
20.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
19.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
19.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
19.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
18.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
18.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
18.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
17.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
17.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
17.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
17.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
16.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
16.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
16.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
15.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
15.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
15.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
14.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.6
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
13.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
12.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
12.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
12.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
11.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
8.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
7.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
6.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
537
Tumor
2.0
351
Tumor
1.0
567
Tumor
1.0
267
Tumor
0.9
123
Tumor
0.9
1021
Tumor
0.9
473
Tumor
0.8
573
Tumor
0.8
647
Tumor
0.7
367
Tumor
0.7
353
Tumor
0.7
724
Normal
0.7
327
Tumor
0.7
413
Tumor
0.7
211
Tumor
0.6
545
Tumor
0.6
911
Tumor
0.6
953
Tumor
0.6
395
Tumor
0.6
937
Tumor
0.6
1013
Tumor
0.5
661
Tumor
0.5
131
Tumor
0.5
957
Tumor
0.5
331
Tumor
0.5
861
Tumor
0.5
283
Tumor
0.5
523
Tumor
0.4
983
Tumor
0.4
191
Tumor
0.4
951
Tumor
0.4
231
Tumor
0.4
527
Tumor
0.4
137
Tumor
0.4
423
Tumor
0.4
285
Tumor
0.4
455
Tumor
0.4
391
Tumor
0.4
387
Tumor
0.4
383
Tumor
0.4
977
Tumor
0.4
1041
Tumor
0.4
227
Tumor
0.3
883
Tumor
0.3
1015
Tumor
0.3
125
Tumor
0.3
312
Normal
0.3
483
Tumor
0.3
422
Normal
0.3
923
Tumor
0.3
571
Tumor
0.3
697
Tumor
0.3
814
Normal
0.3
187
Tumor
0.2
431
Tumor
0.2
361
Tumor
0.2
615
Tumor
0.2
141
Tumor
0.2
721
Tumor
0.2
145
Tumor
0.2
926
Normal
0.2
393
Tumor
0.2
1027
Tumor
0.2
171
Tumor
0.2
443
Tumor
0.2
425
Tumor
0.2
343
Tumor
0.2
261
Tumor
0.2
865
Tumor
0.2
965
Tumor
0.2
617
Tumor
0.2
426
Normal
0.2
958
Normal
0.2
278
Normal
0.2
943
Tumor
0.2
922
Normal
0.2
672
Normal
0.2
341
Tumor
0.2
851
Tumor
0.2
384
Normal
0.2
722
Normal
0.2
815
Tumor
0.2
616
Normal
0.2
881
Tumor
0.2
557
Tumor
0.2
628
Normal
0.2
568
Normal
0.2
685
Tumor
0.2
533
Tumor
0.1
663
Tumor
0.1
435
Tumor
0.1
978
Normal
0.1
1046
Normal
0.1
618
Normal
0.1
912
Normal
0.1
642
Normal
0.1
698
Normal
0.1
332
Normal
0.1
913
Tumor
0.1
445
Tumor
0.1
415
Tumor
0.1
355
Tumor
0.1
427
Tumor
0.1
195
Tumor
0.1
313
Tumor
0.1
388
Normal
0.1
745
Tumor
0.1
354
Normal
0.1
1028
Normal
0.1
984
Normal
0.1
286
Normal
0.1
217
Tumor
0.1
433
Tumor
0.1
665
Tumor
0.1
147
Tumor
0.1
228
Normal
0.1
376
Normal
0.1
636
Normal
0.1
451
Tumor
0.1
738
Normal
0.1
428
Normal
0.1
741
Tumor
0.1
424
Normal
0.1
535
Tumor
0.1
546
Normal
0.1
756
Normal
0.1
976
Normal
0.1
352
Normal
0.1
1032
Normal
0.1
525
Tumor
0.1
925
Tumor
0.1
918
Normal
0.1
342
Normal
0.1
627
Tumor
0.0
982
Normal
0.0
553
Tumor
0.0
284
Normal
0.0
113
Tumor
0.0
635
Tumor
0.0
536
Normal
0.0
314
Normal
0.0
257
Tumor
0.0
385
Tumor
0.0
396
Normal
0.0
135
Tumor
0.0
874
Normal
0.0
414
Normal
0.0
867
Tumor
0.0
915
Tumor
0.0
357
Tumor
0.0
564
Normal
0.0
221
Tumor
0.0
392
Normal
0.0
1014
Normal
0.0
218
Normal
0.0
368
Normal
0.0
465
Tumor
0.0
456
Normal
0.0
466
Normal
0.0
1031
Tumor
0.0
467
Tumor
0.0
662
Normal
0.0
1042
Normal
0.0
1022
Normal
0.0
472
Normal
0.0
785
Tumor
0.0
232
Normal
0.0
746
Normal
0.0
448
Normal
0.0
468
Normal
0.0
132
Normal
0.0
421
Tumor
0.0
394
Normal
0.0
1016
Normal
0.0
728
Normal
0.0
172
Normal
0.0
222
Normal
0.0
447
Tumor
0.0
563
Tumor
0.0
534
Normal
0.0
223
Tumor
0.0
196
Normal
-0.1
434
Normal
-0.1
574
Normal
-0.1
873
Tumor
-0.1
944
Normal
-0.1
882
Normal
-0.1
786
Normal
-0.1
916
Normal
-0.1
411
Tumor
-0.1
723
Tumor
-0.1
558
Normal
-0.1
517
Tumor
-0.1
298
Normal
-0.1
955
Tumor
-0.1
528
Normal
-0.1
188
Normal
-0.1
956
Normal
-0.1
714
Normal
-0.1
671
Tumor
-0.1
778
Normal
-0.1
436
Normal
-0.1
212
Normal
-0.1
186
Normal
-0.1
493
Tumor
-0.1
744
Normal
-0.1
363
Tumor
-0.1
452
Normal
-0.1
364
Normal
-0.1
813
Tumor
-0.1
127
Tumor
-0.1
648
Normal
-0.1
862
Normal
-0.1
1044
Normal
-0.1
968
Normal
-0.1
952
Normal
-0.1
185
Tumor
-0.1
214
Normal
-0.1
446
Normal
-0.1
572
Normal
-0.1
375
Tumor
-0.1
877
Tumor
-0.1
213
Tumor
-0.1
148
Normal
-0.1
258
Normal
-0.1
477
Tumor
-0.1
262
Normal
-0.1
386
Normal
-0.1
478
Normal
-0.1
686
Normal
-0.1
884
Normal
-0.1
464
Normal
-0.1
716
Normal
-0.1
362
Normal
-0.1
344
Normal
-0.1
471
Tumor
-0.1
715
Tumor
-0.1
366
Normal
-0.1
444
Normal
-0.1
967
Tumor
-0.1
136
Normal
-0.1
224
Normal
-0.1
696
Normal
-0.2
356
Normal
-0.2
497
Tumor
-0.2
1045
Tumor
-0.2
554
Normal
-0.2
743
Tumor
-0.2
727
Tumor
-0.2
713
Tumor
-0.2
271
Tumor
-0.2
981
Tumor
-0.2
914
Normal
-0.2
416
Normal
-0.2
297
Tumor
-0.2
463
Tumor
-0.2
311
Tumor
-0.2
666
Normal
-0.2
518
Normal
-0.2
526
Normal
-0.2
128
Normal
-0.2
481
Tumor
-0.2
494
Normal
-0.2
817
Tumor
-0.2
664
Normal
-0.2
954
Normal
-0.2
112
Tumor
-0.2
514
Normal
-0.2
365
Tumor
-0.2
138
Normal
-0.2
538
Normal
-0.2
938
Normal
-0.2
498
Normal
-0.2
864
Normal
-0.2
461
Tumor
-0.2
964
Normal
-0.2
868
Normal
-0.2
755
Tumor
-0.2
272
Normal
-0.2
737
Tumor
-0.2
146
Normal
-0.2
474
Normal
-0.2
328
Normal
-0.2
482
Normal
-0.2
462
Normal
-0.2
515
Tumor
-0.2
863
Tumor
-0.2
641
Tumor
-0.2
142
Normal
-0.2
162
Normal
-0.2
268
Normal
-0.3
924
Normal
-0.3
1026
Normal
-0.3
488
Normal
-0.3
966
Normal
-0.3
524
Normal
-0.3
777
Tumor
-0.3
161
Tumor
-0.3
412
Normal
-0.3
484
Normal
-0.3
487
Tumor
-0.3
742
Normal
-0.3
866
Normal
-0.3
192
Normal
-0.3
917
Tumor
-0.3
1025
Tumor
-0.3
111
Normal
-0.3
114
Normal
-0.3
857
Tumor
-0.3
1043
Tumor
-0.3
858
Normal
-0.4
878
Normal
-0.4
921
Tumor
-0.4
852
Normal
-0.4
124
Normal
-0.4
823
Tumor
-0.4
516
Normal
-0.4
975
Tumor
-0.4
695
Tumor
-0.4
358
Normal
-0.4
963
Tumor
-0.5
491
Tumor
-0.5
824
Normal
-0.5
818
Normal
-0.5
492
Normal
-0.5
277
Tumor
-0.5
513
Tumor
-0.6
816
Normal
-0.6
126
Normal
-0.6
432
Normal
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
