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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OS9 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
160.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
776.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
620.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
405.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
401.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
369.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
340.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
338.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
327.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
322.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
313.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
307.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
306.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
304.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
299.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
298.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
296.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
296.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
291.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
290.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
286.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
283.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
281.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
278.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
277.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
274.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
268.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
268.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
267.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
266.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
261.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
256.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
255.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
253.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
252.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
251.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
251.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
249.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
249.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
249.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
248.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
247.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
246.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
244.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
242.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
240.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
240.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
239.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
239.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
238.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
237.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
234.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
234.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
234.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
232.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
231.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
229.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
229.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
228.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
227.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
227.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
227.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
224.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
224.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
223.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
223.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
221.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
221.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
221.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
216.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
215.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
215.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
215.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
213.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
213.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
212.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
212.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
211.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
210.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
210.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
209.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
208.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
208.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
206.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
206.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
205.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
203.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
203.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
200.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
200.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
199.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
199.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
197.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
196.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
196.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
195.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
195.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
194.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
192.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
190.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
190.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
189.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
188.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
188.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
188.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
186.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
185.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
185.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
183.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
182.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
182.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
182.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
181.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
180.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
180.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
180.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
179.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
178.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
177.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
177.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
177.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
177.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
177.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
176.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
176.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
176.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
176.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
176.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
175.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
175.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
175.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
174.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
174.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
174.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
174.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
174.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
173.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
172.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
171.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
171.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
170.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
170.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
170.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
169.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
169.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
168.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
168.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
167.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
167.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
167.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
167.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
166.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
164.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
164.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
163.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
162.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
162.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
161.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
161.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
161.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
160.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
160.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
160.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
160.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
157.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
157.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
157.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
156.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
155.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
155.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
154.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
153.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
152.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
152.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
152.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
152.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
151.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
151.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
150.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
150.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
149.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
148.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
148.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
147.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
147.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
147.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
147.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
145.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
145.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
145.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
145.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
144.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
143.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
143.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
142.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
142.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
141.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
141.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
140.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
140.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
140.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
140.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
140.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
139.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
139.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
139.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
139.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
138.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
137.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
136.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
136.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
136.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
136.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
136.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
136.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
135.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
135.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
134.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
134.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
134.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
133.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
133.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
133.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
133.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
133.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
132.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
132.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
132.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
131.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
131.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
131.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
131.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
130.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
130.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
129.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
129.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
128.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
128.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
127.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
126.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
125.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
125.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
125.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
125.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
125.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
124.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
123.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
123.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
123.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
123.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
123.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
123.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
122.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
122.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
121.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
121.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
121.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
120.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
119.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
119.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
119.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
118.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
116.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
115.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
114.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
114.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
114.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
114.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
113.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
113.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
113.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
111.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
111.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
111.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
111.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
111.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
111.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
108.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
108.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
108.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
108.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
107.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
107.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
107.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
107.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
105.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
103.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
103.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
102.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
102.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
102.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
101.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
101.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
100.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
100.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
99.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
99.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
98.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
97.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
97.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
94.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
93.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
93.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
92.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
91.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
91.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
91.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
88.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
88.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
87.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
87.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
86.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
85.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
83.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
83.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
83.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
82.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
81.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
81.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
80.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
79.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
78.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
77.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
77.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
76.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
74.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
74.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
72.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
72.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
71.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
71.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
70.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
70.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
69.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
68.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
68.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
67.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
66.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
66.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
66.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
65.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
63.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
63.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
63.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
59.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
59.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
57.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
57.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
56.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
53.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
52.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
51.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
50.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
46.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
44.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
42.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
42.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
39.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
32.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
31.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
26.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OS9 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
135.0
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
302.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
294.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
288.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
276.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
270.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
262.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
249.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
240.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
237.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
225.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
221.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
219.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
216.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
212.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
210.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
208.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
206.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
200.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
199.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
199.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
199.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
194.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
190.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
189.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
189.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
182.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
182.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
180.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
179.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
177.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
175.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
175.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
174.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
174.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
173.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
172.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
172.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
170.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
170.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
168.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
167.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
166.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
165.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
164.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
163.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
162.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
162.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
161.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
160.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
160.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
158.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
158.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
158.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
157.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
157.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
156.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
156.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
155.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
155.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
155.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
155.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
155.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
153.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
153.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
153.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
152.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
151.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
151.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
150.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
150.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
150.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
149.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
149.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
148.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
147.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
147.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
146.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
146.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
145.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
145.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
145.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
144.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
144.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
143.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
143.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
143.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
143.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
142.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
142.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
141.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
141.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
141.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
141.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
141.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
139.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
138.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
138.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
137.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
137.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
136.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
136.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
136.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
136.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
136.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
135.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
133.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
133.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
133.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
132.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
130.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
129.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
129.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
128.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
128.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
128.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
127.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
127.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
127.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
127.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
126.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
126.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
125.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
125.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
125.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
125.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
123.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
123.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
122.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
122.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
122.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
121.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
121.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
121.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
121.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
119.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
119.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
119.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
119.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
119.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
119.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
119.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
118.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
118.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
117.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
116.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
116.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
115.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
114.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
114.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
114.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
113.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
113.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
110.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
110.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
109.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
109.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
108.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
108.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
108.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
107.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
107.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
107.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
106.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
105.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
105.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
104.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
104.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
104.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
104.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
103.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
103.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
102.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
102.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
102.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
102.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
101.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
100.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
100.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
100.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
99.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
99.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
98.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
98.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
98.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
98.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
97.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
97.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
97.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
96.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
96.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
96.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
95.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
94.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
94.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
94.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
94.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
93.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
93.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
93.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
93.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
93.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
93.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
92.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
92.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
91.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
91.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
90.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
90.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
90.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
89.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
88.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
85.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
84.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
84.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
83.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
82.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
77.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
76.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
75.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
75.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
75.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
74.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
72.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
72.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
71.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
70.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
70.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
68.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
66.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
63.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
61.6
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LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
445
Tumor
2.2
527
Tumor
1.8
813
Tumor
1.7
1027
Tumor
1.6
814
Normal
1.2
745
Tumor
1.1
873
Tumor
1.0
727
Tumor
1.0
737
Tumor
1.0
515
Tumor
1.0
227
Tumor
1.0
357
Tumor
1.0
523
Tumor
0.9
615
Tumor
0.9
257
Tumor
0.8
112
Tumor
0.8
863
Tumor
0.8
697
Tumor
0.8
533
Tumor
0.8
857
Tumor
0.7
977
Tumor
0.7
777
Tumor
0.7
423
Tumor
0.7
1015
Tumor
0.7
411
Tumor
0.7
433
Tumor
0.6
435
Tumor
0.6
473
Tumor
0.6
135
Tumor
0.6
463
Tumor
0.5
285
Tumor
0.5
431
Tumor
0.5
497
Tumor
0.5
471
Tumor
0.5
1043
Tumor
0.5
865
Tumor
0.5
231
Tumor
0.5
267
Tumor
0.4
481
Tumor
0.4
963
Tumor
0.4
957
Tumor
0.4
451
Tumor
0.3
365
Tumor
0.3
715
Tumor
0.3
393
Tumor
0.3
743
Tumor
0.3
823
Tumor
0.3
147
Tumor
0.3
141
Tumor
0.3
443
Tumor
0.3
271
Tumor
0.2
1021
Tumor
0.2
741
Tumor
0.2
975
Tumor
0.2
343
Tumor
0.2
361
Tumor
0.2
867
Tumor
0.2
913
Tumor
0.2
1044
Normal
0.2
131
Tumor
0.1
277
Tumor
0.1
755
Tumor
0.1
195
Tumor
0.1
387
Tumor
0.1
383
Tumor
0.1
1013
Tumor
0.1
467
Tumor
0.1
1041
Tumor
0.1
327
Tumor
0.1
696
Normal
0.1
877
Tumor
0.1
663
Tumor
0.1
526
Normal
0.1
756
Normal
0.1
187
Tumor
0.1
647
Tumor
0.0
425
Tumor
0.0
955
Tumor
0.0
493
Tumor
0.0
528
Normal
0.0
1016
Normal
0.0
427
Tumor
0.0
698
Normal
0.0
958
Normal
0.0
518
Normal
0.0
477
Tumor
0.0
851
Tumor
0.0
728
Normal
0.0
557
Tumor
0.0
375
Tumor
0.0
636
Normal
0.0
466
Normal
0.0
817
Tumor
0.0
351
Tumor
0.0
944
Normal
0.0
213
Tumor
0.0
436
Normal
0.0
627
Tumor
0.0
685
Tumor
0.0
864
Normal
0.0
982
Normal
0.0
964
Normal
0.0
1032
Normal
0.0
297
Tumor
0.0
943
Tumor
0.0
125
Tumor
0.0
912
Normal
-0.1
137
Tumor
-0.1
868
Normal
-0.1
1042
Normal
-0.1
516
Normal
-0.1
514
Normal
-0.1
881
Tumor
-0.1
554
Normal
-0.1
416
Normal
-0.1
422
Normal
-0.1
376
Normal
-0.1
746
Normal
-0.1
695
Tumor
-0.1
937
Tumor
-0.1
742
Normal
-0.1
462
Normal
-0.1
926
Normal
-0.1
517
Tumor
-0.1
723
Tumor
-0.1
448
Normal
-0.1
171
Tumor
-0.1
415
Tumor
-0.1
162
Normal
-0.1
553
Tumor
-0.1
866
Normal
-0.1
534
Normal
-0.1
484
Normal
-0.1
967
Tumor
-0.1
738
Normal
-0.1
356
Normal
-0.1
342
Normal
-0.1
882
Normal
-0.1
414
Normal
-0.1
284
Normal
-0.1
1046
Normal
-0.1
824
Normal
-0.1
785
Tumor
-0.1
364
Normal
-0.2
328
Normal
-0.2
452
Normal
-0.2
286
Normal
-0.2
815
Tumor
-0.2
1022
Normal
-0.2
428
Normal
-0.2
721
Tumor
-0.2
818
Normal
-0.2
858
Normal
-0.2
261
Tumor
-0.2
563
Tumor
-0.2
641
Tumor
-0.2
954
Normal
-0.2
567
Tumor
-0.2
861
Tumor
-0.2
713
Tumor
-0.2
221
Tumor
-0.2
142
Normal
-0.2
172
Normal
-0.2
1014
Normal
-0.2
298
Normal
-0.2
426
Normal
-0.2
952
Normal
-0.2
635
Tumor
-0.2
778
Normal
-0.2
228
Normal
-0.2
1045
Tumor
-0.2
564
Normal
-0.2
924
Normal
-0.2
628
Normal
-0.2
424
Normal
-0.2
618
Normal
-0.2
132
Normal
-0.2
138
Normal
-0.2
662
Normal
-0.2
524
Normal
-0.2
432
Normal
-0.2
392
Normal
-0.2
978
Normal
-0.2
665
Tumor
-0.2
446
Normal
-0.2
128
Normal
-0.2
546
Normal
-0.2
918
Normal
-0.2
161
Tumor
-0.3
938
Normal
-0.3
114
Normal
-0.3
648
Normal
-0.3
358
Normal
-0.3
714
Normal
-0.3
786
Normal
-0.3
966
Normal
-0.3
124
Normal
-0.3
468
Normal
-0.3
394
Normal
-0.3
472
Normal
-0.3
716
Normal
-0.3
922
Normal
-0.3
487
Tumor
-0.3
965
Tumor
-0.3
258
Normal
-0.3
568
Normal
-0.3
465
Tumor
-0.3
278
Normal
-0.3
816
Normal
-0.3
953
Tumor
-0.3
976
Normal
-0.3
368
Normal
-0.3
136
Normal
-0.3
232
Normal
-0.3
421
Tumor
-0.3
474
Normal
-0.3
862
Normal
-0.3
461
Tumor
-0.3
968
Normal
-0.3
214
Normal
-0.3
672
Normal
-0.3
722
Normal
-0.3
332
Normal
-0.3
126
Normal
-0.3
492
Normal
-0.3
111
Normal
-0.3
494
Normal
-0.3
412
Normal
-0.3
915
Tumor
-0.3
573
Tumor
-0.3
482
Normal
-0.3
464
Normal
-0.3
447
Tumor
-0.3
212
Normal
-0.3
344
Normal
-0.3
186
Normal
-0.3
444
Normal
-0.3
434
Normal
-0.3
572
Normal
-0.3
661
Tumor
-0.4
878
Normal
-0.4
191
Tumor
-0.4
671
Tumor
-0.4
363
Tumor
-0.4
455
Tumor
-0.4
917
Tumor
-0.4
1026
Normal
-0.4
353
Tumor
-0.4
981
Tumor
-0.4
686
Normal
-0.4
185
Tumor
-0.4
874
Normal
-0.4
188
Normal
-0.4
314
Normal
-0.4
538
Normal
-0.4
525
Tumor
-0.4
642
Normal
-0.4
223
Tumor
-0.4
884
Normal
-0.4
744
Normal
-0.4
852
Normal
-0.4
666
Normal
-0.4
914
Normal
-0.4
574
Normal
-0.4
513
Tumor
-0.4
148
Normal
-0.4
535
Tumor
-0.4
388
Normal
-0.4
536
Normal
-0.4
362
Normal
-0.4
262
Normal
-0.4
984
Normal
-0.4
355
Tumor
-0.4
196
Normal
-0.4
956
Normal
-0.4
268
Normal
-0.4
498
Normal
-0.4
272
Normal
-0.5
222
Normal
-0.5
312
Normal
-0.5
488
Normal
-0.5
384
Normal
-0.5
911
Tumor
-0.5
341
Tumor
-0.5
545
Tumor
-0.5
313
Tumor
-0.5
395
Tumor
-0.5
558
Normal
-0.5
1028
Normal
-0.5
352
Normal
-0.5
366
Normal
-0.5
664
Normal
-0.5
386
Normal
-0.5
483
Tumor
-0.5
616
Normal
-0.5
983
Tumor
-0.5
916
Normal
-0.5
456
Normal
-0.5
925
Tumor
-0.5
617
Tumor
-0.6
145
Tumor
-0.6
354
Normal
-0.6
478
Normal
-0.6
224
Normal
-0.6
923
Tumor
-0.6
921
Tumor
-0.6
123
Tumor
-0.6
146
Normal
-0.6
396
Normal
-0.7
724
Normal
-0.7
491
Tumor
-0.7
127
Tumor
-0.7
218
Normal
-0.7
217
Tumor
-0.7
331
Tumor
-0.7
571
Tumor
-0.7
113
Tumor
-0.7
367
Tumor
-0.7
537
Tumor
-0.7
211
Tumor
-0.8
283
Tumor
-0.9
385
Tumor
-0.9
883
Tumor
-0.9
1031
Tumor
-0.9
192
Normal
-0.9
951
Tumor
-0.9
311
Tumor
-0.9
413
Tumor
-0.9
1025
Tumor
-0.9
391
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.