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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACVR1B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
72.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
54.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
52.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
45.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
38.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
37.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
30.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
29.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
27.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
27.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
27.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
26.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
25.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
25.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
25.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
23.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
22.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
21.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
20.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
20.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
19.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
19.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
19.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
19.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
18.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
18.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
18.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
17.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
17.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
17.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
17.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
16.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
15.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
15.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
15.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
13.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
13.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
13.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.0
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
13.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
12.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
11.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
10.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
10.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
10.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
9.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
9.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
6.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
4.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ACVR1B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
52.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
36.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
23.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
20.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
19.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
18.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
18.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
17.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
17.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
16.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.8
DO50793
0 years, male, NA, stage:4, alive, 540 days
16.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
15.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
15.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
15.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
14.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
14.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
14.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
13.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
11.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
11.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
9.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
8.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
8.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
7.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
6.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
6.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
6.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
5.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
4.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
4.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
4.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
3.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
2.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
573
Tumor
1.9
413
Tumor
1.5
343
Tumor
1.5
493
Tumor
1.0
388
Normal
0.9
858
Normal
0.8
394
Normal
0.8
357
Tumor
0.7
392
Normal
0.7
483
Tumor
0.6
387
Tumor
0.6
742
Normal
0.6
386
Normal
0.6
391
Tumor
0.5
723
Tumor
0.5
471
Tumor
0.5
125
Tumor
0.5
145
Tumor
0.5
385
Tumor
0.5
396
Normal
0.5
967
Tumor
0.4
314
Normal
0.4
728
Normal
0.4
112
Tumor
0.4
473
Tumor
0.4
744
Normal
0.4
1025
Tumor
0.4
126
Normal
0.3
393
Tumor
0.3
298
Normal
0.3
111
Normal
0.3
517
Tumor
0.3
147
Tumor
0.3
424
Normal
0.3
278
Normal
0.3
341
Tumor
0.3
982
Normal
0.3
666
Normal
0.2
874
Normal
0.2
113
Tumor
0.2
1016
Normal
0.2
661
Tumor
0.2
851
Tumor
0.2
332
Normal
0.2
981
Tumor
0.2
124
Normal
0.2
862
Normal
0.2
425
Tumor
0.2
395
Tumor
0.2
481
Tumor
0.2
857
Tumor
0.2
342
Normal
0.2
526
Normal
0.2
414
Normal
0.2
497
Tumor
0.2
743
Tumor
0.2
864
Normal
0.2
422
Normal
0.2
672
Normal
0.2
137
Tumor
0.2
297
Tumor
0.2
546
Normal
0.2
863
Tumor
0.1
462
Normal
0.1
187
Tumor
0.1
865
Tumor
0.1
567
Tumor
0.1
525
Tumor
0.1
135
Tumor
0.1
421
Tumor
0.1
171
Tumor
0.1
873
Tumor
0.1
114
Normal
0.1
527
Tumor
0.1
868
Normal
0.1
127
Tumor
0.1
344
Normal
0.1
518
Normal
0.1
866
Normal
0.1
1014
Normal
0.1
498
Normal
0.1
212
Normal
0.1
482
Normal
0.1
128
Normal
0.1
528
Normal
0.1
353
Tumor
0.1
312
Normal
0.0
635
Tumor
0.0
965
Tumor
0.0
663
Tumor
0.0
186
Normal
0.0
428
Normal
0.0
426
Normal
0.0
427
Tumor
0.0
1027
Tumor
0.0
664
Normal
0.0
514
Normal
0.0
284
Normal
0.0
487
Tumor
0.0
545
Tumor
0.0
474
Normal
0.0
1015
Tumor
0.0
172
Normal
0.0
515
Tumor
0.0
558
Normal
0.0
286
Normal
0.0
472
Normal
0.0
516
Normal
0.0
724
Normal
0.0
523
Tumor
0.0
188
Normal
0.0
627
Tumor
0.0
492
Normal
0.0
228
Normal
0.0
671
Tumor
0.0
571
Tumor
0.0
494
Normal
0.0
818
Normal
0.0
745
Tumor
-0.1
756
Normal
-0.1
824
Normal
-0.1
132
Normal
-0.1
616
Normal
-0.1
572
Normal
-0.1
814
Normal
-0.1
354
Normal
-0.1
534
Normal
-0.1
557
Tumor
-0.1
648
Normal
-0.1
484
Normal
-0.1
1013
Tumor
-0.1
963
Tumor
-0.1
277
Tumor
-0.1
738
Normal
-0.1
223
Tumor
-0.1
823
Tumor
-0.1
977
Tumor
-0.1
867
Tumor
-0.1
563
Tumor
-0.1
727
Tumor
-0.1
755
Tumor
-0.1
815
Tumor
-0.1
477
Tumor
-0.1
662
Normal
-0.1
564
Normal
-0.1
978
Normal
-0.1
817
Tumor
-0.1
975
Tumor
-0.1
642
Normal
-0.2
816
Normal
-0.2
162
Normal
-0.2
331
Tumor
-0.2
861
Tumor
-0.2
968
Normal
-0.2
813
Tumor
-0.2
574
Normal
-0.2
423
Tumor
-0.2
358
Normal
-0.2
538
Normal
-0.2
976
Normal
-0.2
554
Normal
-0.2
778
Normal
-0.2
478
Normal
-0.2
352
Normal
-0.2
957
Tumor
-0.2
618
Normal
-0.2
185
Tumor
-0.2
148
Normal
-0.2
123
Tumor
-0.2
964
Normal
-0.2
647
Tumor
-0.2
488
Normal
-0.2
313
Tumor
-0.2
351
Tumor
-0.2
524
Normal
-0.3
138
Normal
-0.3
568
Normal
-0.3
533
Tumor
-0.3
983
Tumor
-0.3
553
Tumor
-0.3
461
Tumor
-0.3
1041
Tumor
-0.3
852
Normal
-0.3
615
Tumor
-0.3
984
Normal
-0.3
746
Normal
-0.3
146
Normal
-0.3
513
Tumor
-0.3
161
Tumor
-0.3
737
Tumor
-0.3
285
Tumor
-0.3
136
Normal
-0.3
786
Normal
-0.3
142
Normal
-0.3
141
Tumor
-0.4
641
Tumor
-0.4
958
Normal
-0.4
227
Tumor
-0.4
224
Normal
-0.4
283
Tumor
-0.4
636
Normal
-0.5
537
Tumor
-0.5
966
Normal
-0.5
1031
Tumor
-0.5
785
Tumor
-0.5
491
Tumor
-0.5
1032
Normal
-0.5
665
Tumor
-0.5
1022
Normal
-0.6
1042
Normal
-0.6
311
Tumor
-0.6
617
Tumor
-0.6
1028
Normal
-0.7
777
Tumor
-0.7
1026
Normal
-0.7
628
Normal
-0.7
1021
Tumor
-0.7
131
Tumor
-0.8
211
Tumor
-1.1
231
Tumor
N/A
232
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
937
Tumor
N/A
938
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
267
Tumor
N/A
268
Normal
N/A
943
Tumor
N/A
944
Normal
N/A
271
Tumor
N/A
272
Normal
N/A
951
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
741
Tumor
N/A
1046
Normal
N/A
1045
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
877
Tumor
N/A
878
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
883
Tumor
N/A
884
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
451
Tumor
N/A
452
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
221
Tumor
N/A
463
Tumor
N/A
222
Normal
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
