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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R1A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
46.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
516.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
317.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
310.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
310.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
265.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
244.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
225.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
220.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
212.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
208.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
203.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
198.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
190.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
185.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
174.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
174.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
161.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
155.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
154.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
151.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
151.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
150.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
147.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
144.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
142.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
139.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
136.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
131.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
131.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
130.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
128.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
128.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
123.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
122.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
121.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
120.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
117.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
116.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
115.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
113.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
111.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
109.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
109.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
107.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
106.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
104.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
102.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
100.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
97.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
97.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
96.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
94.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
93.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
92.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
92.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
91.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
91.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
90.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
89.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
89.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
89.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
88.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
87.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
87.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
85.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
85.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
85.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
84.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
82.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
82.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
81.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
81.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
81.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
80.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
79.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
79.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
78.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
77.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
77.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
74.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
72.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
72.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
72.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
70.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
69.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
68.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
68.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
68.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
66.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
66.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
65.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
65.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
63.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
63.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
62.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
61.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
61.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
61.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
61.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
60.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
60.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
59.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
59.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
59.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
59.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
58.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
58.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
58.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
58.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
57.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
57.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
56.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
55.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
55.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
55.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
55.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
54.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
54.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
52.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
52.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
51.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
51.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
50.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
50.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
48.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
47.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
46.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
46.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
45.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
44.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
44.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
41.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
41.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
40.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
38.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
38.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
38.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
38.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
38.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
37.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
36.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
36.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
34.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
34.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
34.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
34.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
34.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
33.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
33.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
31.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
31.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
30.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
30.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
29.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
29.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
27.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
27.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
27.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
27.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
27.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
26.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
26.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
26.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
26.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
25.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
25.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
25.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
25.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
25.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
24.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
24.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
23.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
22.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
22.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
21.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
20.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
20.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
18.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
18.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
17.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
17.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
17.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
12.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
8.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
8.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
6.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
2.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
2.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
2.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPP1R1A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
26.4
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
186.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
174.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
171.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
159.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
157.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
132.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
132.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
131.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
129.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
126.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
119.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
109.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
107.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
100.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
99.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
93.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
92.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
83.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
80.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
79.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
77.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
76.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
75.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
75.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
71.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
69.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
68.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
64.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
62.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
61.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
59.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
59.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
58.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
58.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
56.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
56.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
54.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
54.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
54.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
51.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
50.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
50.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
50.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
49.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
49.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
48.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
43.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
43.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
41.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
41.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
40.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
40.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
39.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
38.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
37.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
37.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
36.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
35.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
31.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
27.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
27.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
27.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
26.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
26.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
25.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
25.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
25.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
23.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
23.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
23.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
21.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
21.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
20.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
19.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
19.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
18.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
17.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
16.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
15.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
13.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
13.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
13.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
12.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
6.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
6.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
3.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
3.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
3.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
3.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
2.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
2.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
1.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
1.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
1.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
1.9
487
Tumor
1.6
647
Tumor
1.6
1013
Tumor
1.5
737
Tumor
1.5
1025
Tumor
1.4
411
Tumor
1.4
484
Normal
1.3
527
Tumor
1.3
1026
Normal
1.3
746
Normal
1.2
698
Normal
1.1
436
Normal
1.1
863
Tumor
1.1
714
Normal
1.1
1022
Normal
1.1
923
Tumor
1.1
824
Normal
1.0
938
Normal
1.0
862
Normal
1.0
1046
Normal
1.0
1043
Tumor
1.0
554
Normal
1.0
952
Normal
1.0
695
Tumor
1.0
756
Normal
1.0
286
Normal
0.9
298
Normal
0.9
744
Normal
0.9
858
Normal
0.9
546
Normal
0.9
365
Tumor
0.9
944
Normal
0.9
964
Normal
0.8
515
Tumor
0.8
696
Normal
0.8
472
Normal
0.8
866
Normal
0.8
412
Normal
0.8
222
Normal
0.8
1014
Normal
0.8
534
Normal
0.8
926
Normal
0.8
488
Normal
0.8
742
Normal
0.8
818
Normal
0.8
922
Normal
0.8
786
Normal
0.8
912
Normal
0.8
911
Tumor
0.7
518
Normal
0.7
482
Normal
0.7
957
Tumor
0.7
568
Normal
0.7
1032
Normal
0.7
727
Tumor
0.7
778
Normal
0.7
968
Normal
0.7
878
Normal
0.7
1016
Normal
0.7
277
Tumor
0.7
473
Tumor
0.7
716
Normal
0.7
423
Tumor
0.7
965
Tumor
0.7
448
Normal
0.7
428
Normal
0.6
228
Normal
0.6
943
Tumor
0.6
456
Normal
0.6
882
Normal
0.6
868
Normal
0.6
915
Tumor
0.6
131
Tumor
0.6
728
Normal
0.6
958
Normal
0.6
111
Normal
0.6
954
Normal
0.6
426
Normal
0.6
982
Normal
0.6
984
Normal
0.5
528
Normal
0.5
523
Tumor
0.5
394
Normal
0.5
723
Tumor
0.5
686
Normal
0.5
376
Normal
0.5
864
Normal
0.5
664
Normal
0.5
461
Tumor
0.5
364
Normal
0.5
196
Normal
0.5
574
Normal
0.5
526
Normal
0.5
616
Normal
0.5
572
Normal
0.5
393
Tumor
0.5
618
Normal
0.5
738
Normal
0.5
392
Normal
0.5
414
Normal
0.4
361
Tumor
0.4
142
Normal
0.4
232
Normal
0.4
648
Normal
0.4
465
Tumor
0.4
464
Normal
0.4
1044
Normal
0.4
422
Normal
0.4
462
Normal
0.4
564
Normal
0.4
966
Normal
0.4
366
Normal
0.4
132
Normal
0.4
571
Tumor
0.4
474
Normal
0.4
452
Normal
0.4
162
Normal
0.4
356
Normal
0.4
924
Normal
0.3
816
Normal
0.3
278
Normal
0.3
642
Normal
0.3
227
Tumor
0.3
332
Normal
0.3
396
Normal
0.3
258
Normal
0.3
161
Tumor
0.3
1028
Normal
0.3
514
Normal
0.3
284
Normal
0.3
446
Normal
0.3
127
Tumor
0.3
363
Tumor
0.3
314
Normal
0.3
388
Normal
0.3
976
Normal
0.3
148
Normal
0.3
445
Tumor
0.3
481
Tumor
0.3
186
Normal
0.3
342
Normal
0.3
368
Normal
0.2
128
Normal
0.2
524
Normal
0.2
558
Normal
0.2
424
Normal
0.2
516
Normal
0.2
672
Normal
0.2
615
Tumor
0.2
918
Normal
0.2
124
Normal
0.2
1031
Tumor
0.2
498
Normal
0.2
355
Tumor
0.2
914
Normal
0.2
195
Tumor
0.2
341
Tumor
0.2
662
Normal
0.1
666
Normal
0.1
628
Normal
0.1
114
Normal
0.1
494
Normal
0.1
874
Normal
0.1
386
Normal
0.1
852
Normal
0.1
722
Normal
0.1
517
Tumor
0.1
978
Normal
0.1
823
Tumor
0.1
636
Normal
0.1
466
Normal
0.1
146
Normal
0.1
136
Normal
0.1
358
Normal
0.1
425
Tumor
0.1
513
Tumor
0.0
884
Normal
0.0
432
Normal
0.0
312
Normal
0.0
354
Normal
0.0
492
Normal
0.0
1021
Tumor
0.0
357
Tumor
0.0
141
Tumor
0.0
352
Normal
0.0
483
Tumor
0.0
218
Normal
0.0
713
Tumor
0.0
1042
Normal
0.0
138
Normal
0.0
536
Normal
0.0
956
Normal
0.0
172
Normal
0.0
416
Normal
-0.1
328
Normal
-0.1
468
Normal
-0.1
867
Tumor
-0.1
435
Tumor
-0.1
313
Tumor
-0.1
212
Normal
-0.1
877
Tumor
-0.1
617
Tumor
-0.1
285
Tumor
-0.1
447
Tumor
-0.1
1027
Tumor
-0.1
881
Tumor
-0.1
224
Normal
-0.1
975
Tumor
-0.1
697
Tumor
-0.1
663
Tumor
-0.2
362
Normal
-0.2
385
Tumor
-0.2
214
Normal
-0.2
297
Tumor
-0.2
272
Normal
-0.2
873
Tumor
-0.2
538
Normal
-0.2
471
Tumor
-0.2
344
Normal
-0.2
221
Tumor
-0.3
671
Tumor
-0.3
563
Tumor
-0.3
916
Normal
-0.3
262
Normal
-0.3
126
Normal
-0.3
267
Tumor
-0.3
967
Tumor
-0.3
497
Tumor
-0.4
327
Tumor
-0.4
353
Tumor
-0.4
217
Tumor
-0.4
413
Tumor
-0.4
384
Normal
-0.4
553
Tumor
-0.4
391
Tumor
-0.4
963
Tumor
-0.4
444
Normal
-0.5
857
Tumor
-0.5
865
Tumor
-0.5
817
Tumor
-0.5
641
Tumor
-0.5
573
Tumor
-0.5
937
Tumor
-0.5
955
Tumor
-0.5
627
Tumor
-0.5
443
Tumor
-0.5
545
Tumor
-0.6
953
Tumor
-0.6
478
Normal
-0.6
271
Tumor
-0.6
431
Tumor
-0.6
147
Tumor
-0.6
493
Tumor
-0.6
921
Tumor
-0.6
223
Tumor
-0.6
635
Tumor
-0.6
343
Tumor
-0.6
721
Tumor
-0.6
741
Tumor
-0.6
415
Tumor
-0.7
145
Tumor
-0.7
192
Normal
-0.7
434
Normal
-0.8
557
Tumor
-0.8
387
Tumor
-0.8
467
Tumor
-0.8
814
Normal
-0.8
257
Tumor
-0.8
331
Tumor
-0.8
977
Tumor
-0.8
185
Tumor
-0.8
395
Tumor
-0.9
491
Tumor
-0.9
861
Tumor
-0.9
755
Tumor
-0.9
351
Tumor
-0.9
883
Tumor
-0.9
477
Tumor
-0.9
268
Normal
-0.9
421
Tumor
-1.0
451
Tumor
-1.0
171
Tumor
-1.0
815
Tumor
-1.0
123
Tumor
-1.0
113
Tumor
-1.0
537
Tumor
-1.1
188
Normal
-1.1
981
Tumor
-1.1
112
Tumor
-1.1
813
Tumor
-1.1
743
Tumor
-1.1
433
Tumor
-1.2
137
Tumor
-1.2
1015
Tumor
-1.2
231
Tumor
-1.2
311
Tumor
-1.2
125
Tumor
-1.2
525
Tumor
-1.2
283
Tumor
-1.2
745
Tumor
-1.3
983
Tumor
-1.3
261
Tumor
-1.3
427
Tumor
-1.3
1041
Tumor
-1.3
917
Tumor
-1.3
661
Tumor
-1.4
913
Tumor
-1.4
785
Tumor
-1.4
567
Tumor
-1.4
367
Tumor
-1.4
213
Tumor
-1.4
925
Tumor
-1.4
724
Normal
-1.4
191
Tumor
-1.4
851
Tumor
-1.4
665
Tumor
-1.4
1045
Tumor
-1.4
951
Tumor
-1.4
455
Tumor
-1.4
535
Tumor
-1.5
383
Tumor
-1.5
715
Tumor
-1.5
777
Tumor
-1.6
187
Tumor
-1.6
135
Tumor
-1.7
685
Tumor
-1.8
533
Tumor
-1.9
211
Tumor
-2.0
375
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
