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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX14 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
33.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
121.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
108.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
89.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
78.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
71.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
70.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
69.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
68.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
68.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
68.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
66.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
64.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
63.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
61.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
61.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
60.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
60.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
60.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
58.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
57.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
57.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
56.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
55.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
55.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
54.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
54.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
53.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
53.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
53.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
53.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
53.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
53.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
52.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
51.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
51.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
51.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
51.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
50.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
50.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
50.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
50.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
49.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
49.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
49.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
49.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
49.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
49.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
48.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
48.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
48.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
48.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
48.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
47.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
47.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
47.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
46.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
46.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
46.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
45.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
45.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
45.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
45.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
45.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
44.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
44.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
44.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
44.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
43.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
43.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
43.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
43.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
43.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
42.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
42.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
42.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
42.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
42.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
42.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
41.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
41.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
41.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
41.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
40.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
40.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
40.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
40.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
40.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
40.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
39.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
39.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
39.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
39.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
39.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
39.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
39.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
39.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
38.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
38.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
38.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
38.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
38.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
38.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
38.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
38.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
38.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
38.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
37.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
37.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
37.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
37.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
37.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
37.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
37.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
37.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
36.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
36.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
36.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
36.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
36.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
36.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
35.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
35.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
35.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
34.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
34.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
34.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
34.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
34.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
34.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
34.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
34.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
34.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
34.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
34.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
34.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
34.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
33.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
33.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
33.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
33.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
33.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
33.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
33.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
33.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
32.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
32.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
32.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
32.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
32.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
32.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
32.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
32.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
32.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
31.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
31.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
31.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
31.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
31.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
31.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
31.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
30.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
30.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
30.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
30.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
30.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
30.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
30.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
29.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
29.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
29.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
29.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
29.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
29.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
29.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
29.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
28.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
28.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
28.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
28.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
28.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
28.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
28.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
28.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
28.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
27.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
27.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
27.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
27.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
27.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
27.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
26.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
26.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
25.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
25.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
25.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
25.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
25.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
25.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
25.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
25.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
25.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
25.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
24.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
24.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
24.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
24.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
24.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
23.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
23.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
22.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
22.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
22.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
22.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
22.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
22.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
22.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
21.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
21.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
21.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
20.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
20.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
20.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
19.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
19.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
18.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
18.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
18.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
18.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
18.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
18.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
18.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
17.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
17.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
16.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
16.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
14.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
14.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
14.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
13.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
13.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
12.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
12.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
12.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SNX14 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.9
Number of samples
231
Samples
Sample
Description
TPM
DO45203
0 years, female, NA, stage:2, alive, 1170 days
50.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
47.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
38.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
38.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
34.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
33.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
32.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
32.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
32.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
32.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
30.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
29.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
29.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
28.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
28.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
28.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
28.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
28.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
27.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
27.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
25.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
25.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
25.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
25.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
24.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
24.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
23.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
23.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
23.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
23.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
23.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
22.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
22.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
21.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
21.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
21.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
20.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
20.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
20.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
20.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
20.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
20.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
19.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
19.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
19.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
19.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
19.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
19.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
18.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
18.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
18.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
18.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
17.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
17.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
17.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
17.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
17.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
17.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
17.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
16.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
16.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
16.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
15.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
15.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
15.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
15.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
15.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
14.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
14.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
13.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
12.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
11.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
11.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
10.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
7.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
5.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
313
Tumor
0.8
445
Tumor
0.6
1027
Tumor
0.6
257
Tumor
0.6
261
Tumor
0.6
298
Normal
0.5
388
Normal
0.5
491
Tumor
0.5
185
Tumor
0.5
222
Normal
0.5
391
Tumor
0.5
396
Normal
0.5
132
Normal
0.5
1041
Tumor
0.4
125
Tumor
0.4
435
Tumor
0.4
615
Tumor
0.4
186
Normal
0.4
641
Tumor
0.4
147
Tumor
0.4
227
Tumor
0.4
392
Normal
0.4
142
Normal
0.4
138
Normal
0.4
745
Tumor
0.4
192
Normal
0.4
863
Tumor
0.4
394
Normal
0.4
386
Normal
0.4
145
Tumor
0.4
277
Tumor
0.4
384
Normal
0.4
258
Normal
0.4
353
Tumor
0.4
463
Tumor
0.4
314
Normal
0.4
571
Tumor
0.4
431
Tumor
0.4
785
Tumor
0.4
727
Tumor
0.4
196
Normal
0.4
278
Normal
0.4
358
Normal
0.4
136
Normal
0.3
817
Tumor
0.3
527
Tumor
0.3
568
Normal
0.3
171
Tumor
0.3
354
Normal
0.3
742
Normal
0.3
162
Normal
0.3
456
Normal
0.3
343
Tumor
0.3
188
Normal
0.3
452
Normal
0.3
172
Normal
0.3
368
Normal
0.3
332
Normal
0.3
444
Normal
0.3
867
Tumor
0.3
221
Tumor
0.3
366
Normal
0.3
161
Tumor
0.3
468
Normal
0.3
135
Tumor
0.3
375
Tumor
0.3
616
Normal
0.3
1043
Tumor
0.3
446
Normal
0.3
636
Normal
0.3
1046
Normal
0.3
911
Tumor
0.3
342
Normal
0.3
432
Normal
0.3
814
Normal
0.3
271
Tumor
0.3
813
Tumor
0.3
564
Normal
0.3
383
Tumor
0.2
123
Tumor
0.2
148
Normal
0.2
214
Normal
0.2
851
Tumor
0.2
128
Normal
0.2
464
Normal
0.2
563
Tumor
0.2
723
Tumor
0.2
146
Normal
0.2
666
Normal
0.2
642
Normal
0.2
365
Tumor
0.2
728
Normal
0.2
376
Normal
0.2
1014
Normal
0.2
915
Tumor
0.2
965
Tumor
0.2
478
Normal
0.2
536
Normal
0.2
482
Normal
0.2
141
Tumor
0.2
363
Tumor
0.2
627
Tumor
0.2
665
Tumor
0.2
297
Tumor
0.2
311
Tumor
0.2
268
Normal
0.2
231
Tumor
0.2
697
Tumor
0.2
953
Tumor
0.2
361
Tumor
0.2
426
Normal
0.2
218
Normal
0.2
137
Tumor
0.2
428
Normal
0.2
738
Normal
0.2
1021
Tumor
0.2
914
Normal
0.2
672
Normal
0.2
572
Normal
0.2
283
Tumor
0.2
786
Normal
0.2
124
Normal
0.2
744
Normal
0.2
868
Normal
0.2
455
Tumor
0.2
648
Normal
0.2
427
Tumor
0.2
191
Tumor
0.2
262
Normal
0.2
957
Tumor
0.2
352
Normal
0.2
514
Normal
0.2
312
Normal
0.2
362
Normal
0.1
434
Normal
0.1
1044
Normal
0.1
954
Normal
0.1
367
Tumor
0.1
662
Normal
0.1
574
Normal
0.1
425
Tumor
0.1
917
Tumor
0.1
975
Tumor
0.1
447
Tumor
0.1
618
Normal
0.1
341
Tumor
0.1
187
Tumor
0.1
126
Normal
0.1
558
Normal
0.1
756
Normal
0.1
344
Normal
0.1
573
Tumor
0.1
1042
Normal
0.1
217
Tumor
0.1
443
Tumor
0.1
331
Tumor
0.1
195
Tumor
0.1
916
Normal
0.1
1022
Normal
0.1
963
Tumor
0.1
462
Normal
0.1
724
Normal
0.1
977
Tumor
0.1
526
Normal
0.1
423
Tumor
0.1
921
Tumor
0.1
481
Tumor
0.1
351
Tumor
0.1
467
Tumor
0.1
1032
Normal
0.1
534
Normal
0.1
741
Tumor
0.1
224
Normal
0.1
956
Normal
0.1
777
Tumor
0.1
713
Tumor
0.1
424
Normal
0.1
387
Tumor
0.1
1025
Tumor
0.1
864
Normal
0.1
663
Tumor
0.1
533
Tumor
0.1
721
Tumor
0.1
958
Normal
0.1
951
Tumor
0.1
436
Normal
0.1
698
Normal
0.1
722
Normal
0.1
778
Normal
0.1
356
Normal
0.1
944
Normal
0.1
984
Normal
0.1
686
Normal
0.1
267
Tumor
0.1
628
Normal
0.1
685
Tumor
0.1
472
Normal
0.0
664
Normal
0.0
938
Normal
0.0
112
Tumor
0.0
414
Normal
0.0
286
Normal
0.0
114
Normal
0.0
516
Normal
0.0
1031
Tumor
0.0
494
Normal
0.0
978
Normal
0.0
1016
Normal
0.0
982
Normal
0.0
528
Normal
0.0
866
Normal
0.0
858
Normal
0.0
862
Normal
0.0
918
Normal
0.0
943
Tumor
0.0
816
Normal
0.0
474
Normal
0.0
852
Normal
0.0
968
Normal
0.0
1013
Tumor
0.0
537
Tumor
0.0
127
Tumor
0.0
925
Tumor
0.0
416
Normal
0.0
553
Tumor
0.0
213
Tumor
0.0
696
Normal
0.0
413
Tumor
0.0
881
Tumor
0.0
223
Tumor
0.0
211
Tumor
0.0
976
Normal
0.0
861
Tumor
0.0
212
Normal
0.0
1045
Tumor
0.0
228
Normal
0.0
815
Tumor
0.0
716
Normal
0.0
328
Normal
0.0
421
Tumor
0.0
546
Normal
0.0
873
Tumor
0.0
661
Tumor
0.0
498
Normal
0.0
926
Normal
0.0
357
Tumor
0.0
513
Tumor
0.0
515
Tumor
0.0
981
Tumor
0.0
635
Tumor
0.0
964
Normal
0.0
922
Normal
0.0
113
Tumor
0.0
364
Normal
0.0
385
Tumor
0.0
451
Tumor
0.0
647
Tumor
0.0
535
Tumor
0.0
524
Normal
0.0
466
Normal
0.0
818
Normal
0.0
714
Normal
0.0
874
Normal
-0.1
284
Normal
-0.1
617
Tumor
-0.1
554
Normal
-0.1
695
Tumor
-0.1
525
Tumor
-0.1
952
Normal
-0.1
433
Tumor
-0.1
966
Normal
-0.1
857
Tumor
-0.1
484
Normal
-0.1
415
Tumor
-0.1
924
Normal
-0.1
422
Normal
-0.1
878
Normal
-0.1
473
Tumor
-0.1
937
Tumor
-0.1
955
Tumor
-0.1
746
Normal
-0.1
912
Normal
-0.1
538
Normal
-0.1
1026
Normal
-0.1
737
Tumor
-0.1
395
Tumor
-0.1
824
Normal
-0.1
471
Tumor
-0.1
877
Tumor
-0.1
755
Tumor
-0.1
327
Tumor
-0.1
884
Normal
-0.1
393
Tumor
-0.1
411
Tumor
-0.1
523
Tumor
-0.1
492
Normal
-0.1
1028
Normal
-0.1
823
Tumor
-0.1
517
Tumor
-0.1
111
Normal
-0.1
487
Tumor
-0.1
448
Normal
-0.1
488
Normal
-0.1
412
Normal
-0.1
477
Tumor
-0.2
518
Normal
-0.2
465
Tumor
-0.2
1015
Tumor
-0.2
743
Tumor
-0.2
567
Tumor
-0.2
882
Normal
-0.2
131
Tumor
-0.2
967
Tumor
-0.2
913
Tumor
-0.2
483
Tumor
-0.2
883
Tumor
-0.2
497
Tumor
-0.2
671
Tumor
-0.2
232
Normal
-0.2
983
Tumor
-0.2
461
Tumor
-0.3
557
Tumor
-0.3
923
Tumor
-0.3
493
Tumor
-0.3
355
Tumor
-0.3
285
Tumor
-0.5
865
Tumor
-0.5
715
Tumor
-0.5
545
Tumor
-0.6
272
Normal
-2.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
