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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYNCRIP is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
25.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
91.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
88.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
81.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
80.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
79.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
75.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
68.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
68.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
66.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
64.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
63.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
59.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
58.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
57.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
57.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
56.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
56.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
55.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
52.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
51.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
51.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
48.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
47.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
47.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
47.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
46.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
46.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
45.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
45.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
45.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
44.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
44.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
44.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
44.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
43.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
43.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
42.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
42.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
41.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
41.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
41.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
41.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
40.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
40.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
40.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
40.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
40.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
39.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.6
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
39.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
39.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
38.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
38.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
38.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
37.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
37.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
37.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
36.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
36.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
36.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
36.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
36.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
35.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
34.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
34.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
34.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
34.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
34.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
33.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
33.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
32.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
32.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
31.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
31.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
31.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
31.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
31.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
30.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
30.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
30.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
29.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
29.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
29.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
29.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
29.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
29.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
29.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
29.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
29.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
28.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
28.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
28.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
28.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
28.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
28.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
28.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
27.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
27.7
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
27.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
27.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
27.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
27.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
26.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
26.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
26.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
26.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
26.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
26.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
26.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
26.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
26.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
25.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
25.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
25.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
25.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
24.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
24.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
24.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
24.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
24.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
24.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
23.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
23.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
23.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
23.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
23.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
23.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
23.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
23.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
22.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
22.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
22.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
22.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
21.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
21.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
21.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
20.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
20.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
20.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
20.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
20.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
20.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
19.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
19.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
19.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
19.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
18.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
18.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
18.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
17.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
17.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
17.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
17.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
17.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
16.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
16.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
16.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
16.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
16.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
15.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
15.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
14.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
13.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
13.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
13.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
12.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
11.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
11.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
11.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
11.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
11.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
10.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
10.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
9.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
7.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
6.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SYNCRIP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
24.4
Number of samples
231
Samples
Sample
Description
TPM
DO45267
0 years, male, NA, stage:3, dead, 570 days
67.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
64.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
63.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
54.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
52.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
50.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
47.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
47.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
46.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
45.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
44.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
43.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
42.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
42.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
41.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
41.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
40.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
40.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
40.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
40.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
39.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
39.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
39.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
39.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
38.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
38.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
38.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
38.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
37.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
36.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
36.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
36.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
36.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
35.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
35.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
34.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
33.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
32.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
31.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
31.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
31.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
30.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
30.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
30.4
DO23510
0 years, female, NA, stage:2, alive, 870 days
30.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
30.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
29.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
29.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
28.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
28.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
28.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
27.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
27.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
27.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
27.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
26.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
26.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
26.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
26.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
26.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
26.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
26.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
25.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
25.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
25.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
24.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
24.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
24.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
24.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
24.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
23.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
23.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
22.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
22.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
22.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
22.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
21.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
21.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
20.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
20.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
20.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
19.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
19.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
19.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
19.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
18.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
18.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
18.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
18.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
18.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
18.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
18.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
17.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
17.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
17.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
17.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
17.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
16.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
16.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
16.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
15.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
12.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
12.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
12.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
0.9
1025
Tumor
0.7
951
Tumor
0.7
1041
Tumor
0.7
663
Tumor
0.7
131
Tumor
0.7
983
Tumor
0.6
695
Tumor
0.6
443
Tumor
0.6
425
Tumor
0.6
965
Tumor
0.6
977
Tumor
0.6
743
Tumor
0.5
411
Tumor
0.5
817
Tumor
0.5
427
Tumor
0.5
537
Tumor
0.5
661
Tumor
0.5
737
Tumor
0.5
313
Tumor
0.5
331
Tumor
0.5
473
Tumor
0.5
271
Tumor
0.4
123
Tumor
0.4
112
Tumor
0.4
431
Tumor
0.4
943
Tumor
0.4
1015
Tumor
0.4
815
Tumor
0.4
221
Tumor
0.4
1031
Tumor
0.4
937
Tumor
0.4
957
Tumor
0.4
523
Tumor
0.4
535
Tumor
0.4
925
Tumor
0.4
724
Normal
0.4
533
Tumor
0.3
1021
Tumor
0.3
211
Tumor
0.3
525
Tumor
0.3
873
Tumor
0.3
267
Tumor
0.3
463
Tumor
0.3
527
Tumor
0.3
685
Tumor
0.3
1013
Tumor
0.3
963
Tumor
0.3
455
Tumor
0.3
285
Tumor
0.3
367
Tumor
0.3
567
Tumor
0.3
921
Tumor
0.3
953
Tumor
0.3
355
Tumor
0.3
883
Tumor
0.3
471
Tumor
0.3
727
Tumor
0.3
665
Tumor
0.3
1043
Tumor
0.3
277
Tumor
0.3
297
Tumor
0.3
975
Tumor
0.2
777
Tumor
0.2
161
Tumor
0.2
227
Tumor
0.2
421
Tumor
0.2
861
Tumor
0.2
553
Tumor
0.2
967
Tumor
0.2
515
Tumor
0.2
571
Tumor
0.2
363
Tumor
0.2
881
Tumor
0.2
615
Tumor
0.2
447
Tumor
0.2
477
Tumor
0.2
341
Tumor
0.2
563
Tumor
0.2
697
Tumor
0.2
185
Tumor
0.2
283
Tumor
0.2
461
Tumor
0.1
135
Tumor
0.1
465
Tumor
0.1
823
Tumor
0.1
911
Tumor
0.1
451
Tumor
0.1
387
Tumor
0.1
491
Tumor
0.1
311
Tumor
0.1
343
Tumor
0.1
113
Tumor
0.1
137
Tumor
0.1
125
Tumor
0.1
127
Tumor
0.1
741
Tumor
0.1
383
Tumor
0.1
395
Tumor
0.1
641
Tumor
0.1
187
Tumor
0.1
913
Tumor
0.1
721
Tumor
0.1
865
Tumor
0.1
955
Tumor
0.1
487
Tumor
0.1
445
Tumor
0.1
357
Tumor
0.1
545
Tumor
0.1
435
Tumor
0.1
867
Tumor
0.1
415
Tumor
0.1
483
Tumor
0.1
353
Tumor
0.1
327
Tumor
0.1
493
Tumor
0.1
492
Normal
0.0
617
Tumor
0.0
171
Tumor
0.0
413
Tumor
0.0
714
Normal
0.0
923
Tumor
0.0
755
Tumor
0.0
966
Normal
0.0
478
Normal
0.0
954
Normal
0.0
524
Normal
0.0
981
Tumor
0.0
915
Tumor
0.0
484
Normal
0.0
536
Normal
0.0
141
Tumor
0.0
944
Normal
0.0
423
Tumor
0.0
813
Tumor
0.0
958
Normal
0.0
375
Tumor
0.0
554
Normal
0.0
223
Tumor
0.0
938
Normal
0.0
696
Normal
0.0
713
Tumor
0.0
1014
Normal
0.0
433
Tumor
0.0
351
Tumor
0.0
391
Tumor
0.0
517
Tumor
0.0
627
Tumor
0.0
538
Normal
0.0
814
Normal
0.0
412
Normal
0.0
877
Tumor
0.0
686
Normal
0.0
498
Normal
0.0
738
Normal
0.0
978
Normal
0.0
573
Tumor
0.0
1045
Tumor
-0.1
534
Normal
-0.1
912
Normal
-0.1
1032
Normal
-0.1
147
Tumor
-0.1
1028
Normal
-0.1
217
Tumor
-0.1
488
Normal
-0.1
968
Normal
-0.1
284
Normal
-0.1
1027
Tumor
-0.1
918
Normal
-0.1
448
Normal
-0.1
526
Normal
-0.1
984
Normal
-0.1
191
Tumor
-0.1
878
Normal
-0.1
756
Normal
-0.1
212
Normal
-0.1
513
Tumor
-0.1
472
Normal
-0.1
851
Tumor
-0.1
494
Normal
-0.1
546
Normal
-0.1
922
Normal
-0.1
482
Normal
-0.1
365
Tumor
-0.1
128
Normal
-0.1
444
Normal
-0.1
715
Tumor
-0.1
557
Tumor
-0.1
926
Normal
-0.1
716
Normal
-0.1
528
Normal
-0.1
778
Normal
-0.1
514
Normal
-0.1
228
Normal
-0.1
964
Normal
-0.1
916
Normal
-0.1
1026
Normal
-0.1
745
Tumor
-0.1
746
Normal
-0.1
516
Normal
-0.1
924
Normal
-0.1
124
Normal
-0.1
742
Normal
-0.1
385
Tumor
-0.1
952
Normal
-0.1
728
Normal
-0.1
857
Tumor
-0.1
558
Normal
-0.1
145
Tumor
-0.1
858
Normal
-0.1
462
Normal
-0.1
976
Normal
-0.1
518
Normal
-0.1
786
Normal
-0.1
1046
Normal
-0.1
864
Normal
-0.1
723
Tumor
-0.1
328
Normal
-0.1
261
Tumor
-0.1
824
Normal
-0.2
744
Normal
-0.2
286
Normal
-0.2
572
Normal
-0.2
364
Normal
-0.2
882
Normal
-0.2
114
Normal
-0.2
1016
Normal
-0.2
1022
Normal
-0.2
982
Normal
-0.2
636
Normal
-0.2
917
Tumor
-0.2
384
Normal
-0.2
852
Normal
-0.2
222
Normal
-0.2
422
Normal
-0.2
196
Normal
-0.2
142
Normal
-0.2
224
Normal
-0.2
268
Normal
-0.2
474
Normal
-0.2
866
Normal
-0.2
416
Normal
-0.2
884
Normal
-0.2
352
Normal
-0.2
432
Normal
-0.2
818
Normal
-0.2
956
Normal
-0.2
862
Normal
-0.2
1042
Normal
-0.2
218
Normal
-0.2
356
Normal
-0.2
628
Normal
-0.2
262
Normal
-0.2
298
Normal
-0.2
868
Normal
-0.2
466
Normal
-0.2
698
Normal
-0.2
214
Normal
-0.2
434
Normal
-0.2
647
Tumor
-0.2
342
Normal
-0.2
436
Normal
-0.2
414
Normal
-0.2
785
Tumor
-0.2
126
Normal
-0.2
722
Normal
-0.2
368
Normal
-0.2
392
Normal
-0.2
162
Normal
-0.2
874
Normal
-0.2
213
Tumor
-0.2
344
Normal
-0.2
816
Normal
-0.2
332
Normal
-0.2
446
Normal
-0.2
232
Normal
-0.2
111
Normal
-0.2
467
Tumor
-0.2
362
Normal
-0.2
1044
Normal
-0.2
376
Normal
-0.3
188
Normal
-0.3
192
Normal
-0.3
231
Tumor
-0.3
664
Normal
-0.3
272
Normal
-0.3
426
Normal
-0.3
146
Normal
-0.3
312
Normal
-0.3
914
Normal
-0.3
616
Normal
-0.3
386
Normal
-0.3
136
Normal
-0.3
468
Normal
-0.3
648
Normal
-0.3
394
Normal
-0.3
354
Normal
-0.3
358
Normal
-0.3
863
Tumor
-0.3
428
Normal
-0.3
314
Normal
-0.3
257
Tumor
-0.3
672
Normal
-0.3
642
Normal
-0.3
456
Normal
-0.3
671
Tumor
-0.3
138
Normal
-0.3
424
Normal
-0.3
148
Normal
-0.3
172
Normal
-0.3
662
Normal
-0.3
564
Normal
-0.3
464
Normal
-0.3
666
Normal
-0.3
132
Normal
-0.3
568
Normal
-0.3
618
Normal
-0.3
452
Normal
-0.3
186
Normal
-0.3
574
Normal
-0.3
258
Normal
-0.3
366
Normal
-0.3
396
Normal
-0.4
278
Normal
-0.4
388
Normal
-0.4
361
Tumor
-0.4
195
Tumor
-0.4
393
Tumor
-0.4
481
Tumor
-0.4
635
Tumor
-0.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
