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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OASL is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
114.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
92.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
85.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
53.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
53.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
52.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
50.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
49.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
48.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
44.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
44.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
41.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
41.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
39.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
38.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
35.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
33.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
31.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
31.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
30.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
30.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
28.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
28.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
27.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
24.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
24.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
23.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
23.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
22.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
22.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
22.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
21.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
21.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
21.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
21.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
17.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
16.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
15.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
14.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
13.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
9.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
8.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
8.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.8
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
7.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
7.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
6.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
5.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.5
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
4.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
4.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
4.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
3.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
3.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
2.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
2.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
2.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
1.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
1.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
OASL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.1
Number of samples
231
Samples
Sample
Description
TPM
DO50845
0 years, male, NA, stage:3, alive, 210 days
637.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
220.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
168.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
151.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
147.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
145.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
133.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
122.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
118.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
102.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
99.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
93.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
72.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
66.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
60.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
57.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
53.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
52.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
51.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
49.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
48.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
43.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
39.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
38.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
36.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
36.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
31.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
29.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
28.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
27.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
26.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
26.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
25.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
25.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
24.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
24.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
23.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
22.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
21.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
21.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
21.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
20.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
19.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
19.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
19.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
19.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
18.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
17.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
17.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
16.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
16.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
15.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
13.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
11.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
10.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
10.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
10.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
10.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
9.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
7.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
6.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
4.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
4.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
4.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
3.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
3.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
3.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
3.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
2.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
2.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
2.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
2.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
2.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
1.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
1.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
1.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
1.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
1.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
1.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
1.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
857
Tumor
2.3
113
Tumor
2.0
913
Tumor
1.9
145
Tumor
1.7
513
Tumor
1.3
123
Tumor
1.3
1015
Tumor
1.3
126
Normal
1.2
873
Tumor
1.0
647
Tumor
1.0
262
Normal
0.9
1045
Tumor
0.9
395
Tumor
0.9
188
Normal
0.8
311
Tumor
0.8
536
Normal
0.8
416
Normal
0.7
755
Tumor
0.7
213
Tumor
0.7
883
Tumor
0.7
443
Tumor
0.7
465
Tumor
0.7
423
Tumor
0.7
343
Tumor
0.6
533
Tumor
0.6
365
Tumor
0.6
467
Tumor
0.6
448
Normal
0.6
1046
Normal
0.6
981
Tumor
0.6
865
Tumor
0.5
884
Normal
0.5
955
Tumor
0.5
777
Tumor
0.5
951
Tumor
0.5
1044
Normal
0.5
327
Tumor
0.5
433
Tumor
0.5
214
Normal
0.5
964
Normal
0.5
978
Normal
0.5
434
Normal
0.4
114
Normal
0.4
268
Normal
0.4
366
Normal
0.4
344
Normal
0.4
415
Tumor
0.4
141
Tumor
0.4
136
Normal
0.4
187
Tumor
0.4
663
Tumor
0.4
368
Normal
0.4
861
Tumor
0.4
1043
Tumor
0.3
557
Tumor
0.3
515
Tumor
0.3
358
Normal
0.3
925
Tumor
0.3
422
Normal
0.3
111
Normal
0.3
218
Normal
0.3
314
Normal
0.3
571
Tumor
0.3
217
Tumor
0.3
487
Tumor
0.3
858
Normal
0.3
524
Normal
0.3
357
Tumor
0.3
386
Normal
0.3
966
Normal
0.3
414
Normal
0.2
362
Normal
0.2
112
Tumor
0.2
937
Tumor
0.2
648
Normal
0.2
138
Normal
0.2
628
Normal
0.2
396
Normal
0.2
258
Normal
0.2
724
Normal
0.2
376
Normal
0.2
568
Normal
0.2
353
Tumor
0.2
361
Tumor
0.2
977
Tumor
0.2
956
Normal
0.2
341
Tumor
0.2
354
Normal
0.2
982
Normal
0.2
412
Normal
0.2
627
Tumor
0.2
785
Tumor
0.2
388
Normal
0.2
914
Normal
0.2
424
Normal
0.2
132
Normal
0.2
172
Normal
0.2
272
Normal
0.1
916
Normal
0.1
493
Tumor
0.1
411
Tumor
0.1
558
Normal
0.1
662
Normal
0.1
426
Normal
0.1
1028
Normal
0.1
452
Normal
0.1
196
Normal
0.1
267
Tumor
0.1
926
Normal
0.1
428
Normal
0.1
435
Tumor
0.1
1032
Normal
0.1
432
Normal
0.1
446
Normal
0.1
468
Normal
0.1
814
Normal
0.1
212
Normal
0.1
954
Normal
0.1
462
Normal
0.1
284
Normal
0.1
698
Normal
0.1
874
Normal
0.1
128
Normal
0.1
554
Normal
0.1
1022
Normal
0.1
918
Normal
0.1
915
Tumor
0.1
464
Normal
0.1
862
Normal
0.1
278
Normal
0.1
286
Normal
0.1
492
Normal
0.1
352
Normal
0.1
124
Normal
0.0
574
Normal
0.0
958
Normal
0.0
1042
Normal
0.0
878
Normal
0.0
146
Normal
0.0
852
Normal
0.0
195
Tumor
0.0
444
Normal
0.0
1016
Normal
0.0
818
Normal
0.0
356
Normal
0.0
866
Normal
0.0
211
Tumor
0.0
868
Normal
0.0
938
Normal
0.0
162
Normal
0.0
863
Tumor
0.0
461
Tumor
0.0
742
Normal
0.0
665
Tumor
0.0
351
Tumor
0.0
957
Tumor
0.0
922
Normal
0.0
466
Normal
0.0
364
Normal
0.0
881
Tumor
0.0
447
Tumor
0.0
481
Tumor
0.0
1014
Normal
0.0
616
Normal
0.0
741
Tumor
0.0
478
Normal
0.0
721
Tumor
0.0
328
Normal
0.0
142
Normal
0.0
615
Tumor
0.0
498
Normal
0.0
864
Normal
0.0
436
Normal
0.0
261
Tumor
0.0
641
Tumor
0.0
455
Tumor
-0.1
572
Normal
-0.1
488
Normal
-0.1
824
Normal
-0.1
666
Normal
-0.1
728
Normal
-0.1
952
Normal
-0.1
221
Tumor
-0.1
911
Tumor
-0.1
1021
Tumor
-0.1
518
Normal
-0.1
516
Normal
-0.1
976
Normal
-0.1
984
Normal
-0.1
618
Normal
-0.1
968
Normal
-0.1
471
Tumor
-0.1
384
Normal
-0.1
664
Normal
-0.1
222
Normal
-0.1
867
Tumor
-0.1
1031
Tumor
-0.1
538
Normal
-0.1
526
Normal
-0.1
394
Normal
-0.1
636
Normal
-0.1
494
Normal
-0.1
816
Normal
-0.1
943
Tumor
-0.1
185
Tumor
-0.1
224
Normal
-0.1
393
Tumor
-0.1
746
Normal
-0.1
127
Tumor
-0.1
482
Normal
-0.1
232
Normal
-0.1
912
Normal
-0.1
413
Tumor
-0.1
312
Normal
-0.1
277
Tumor
-0.1
451
Tumor
-0.1
722
Normal
-0.2
427
Tumor
-0.2
1026
Normal
-0.2
421
Tumor
-0.2
342
Normal
-0.2
944
Normal
-0.2
477
Tumor
-0.2
383
Tumor
-0.2
756
Normal
-0.2
484
Normal
-0.2
917
Tumor
-0.2
474
Normal
-0.2
786
Normal
-0.2
727
Tumor
-0.2
171
Tumor
-0.2
137
Tumor
-0.2
738
Normal
-0.2
192
Normal
-0.2
514
Normal
-0.2
228
Normal
-0.2
534
Normal
-0.2
391
Tumor
-0.2
778
Normal
-0.2
723
Tumor
-0.2
392
Normal
-0.2
456
Normal
-0.2
1041
Tumor
-0.2
472
Normal
-0.2
672
Normal
-0.2
882
Normal
-0.2
635
Tumor
-0.3
283
Tumor
-0.3
716
Normal
-0.3
661
Tumor
-0.3
431
Tumor
-0.3
923
Tumor
-0.3
191
Tumor
-0.3
851
Tumor
-0.3
563
Tumor
-0.3
924
Normal
-0.3
125
Tumor
-0.3
642
Normal
-0.3
528
Normal
-0.3
483
Tumor
-0.3
148
Normal
-0.3
975
Tumor
-0.3
564
Normal
-0.3
332
Normal
-0.3
686
Normal
-0.3
186
Normal
-0.3
535
Tumor
-0.3
963
Tumor
-0.3
546
Normal
-0.4
355
Tumor
-0.4
161
Tumor
-0.4
271
Tumor
-0.4
231
Tumor
-0.4
297
Tumor
-0.4
527
Tumor
-0.4
135
Tumor
-0.4
223
Tumor
-0.4
696
Normal
-0.4
953
Tumor
-0.4
553
Tumor
-0.4
737
Tumor
-0.5
983
Tumor
-0.5
375
Tumor
-0.5
463
Tumor
-0.5
491
Tumor
-0.5
697
Tumor
-0.5
617
Tumor
-0.5
298
Normal
-0.5
921
Tumor
-0.5
813
Tumor
-0.5
714
Normal
-0.5
387
Tumor
-0.5
744
Normal
-0.6
473
Tumor
-0.6
695
Tumor
-0.6
227
Tumor
-0.6
815
Tumor
-0.6
877
Tumor
-0.6
823
Tumor
-0.6
1013
Tumor
-0.7
363
Tumor
-0.7
715
Tumor
-0.7
685
Tumor
-0.7
385
Tumor
-0.7
713
Tumor
-0.7
745
Tumor
-0.7
257
Tumor
-0.7
331
Tumor
-0.7
367
Tumor
-0.8
525
Tumor
-0.8
445
Tumor
-0.8
131
Tumor
-0.8
147
Tumor
-0.8
313
Tumor
-0.8
425
Tumor
-0.8
817
Tumor
-0.8
497
Tumor
-0.9
1025
Tumor
-0.9
671
Tumor
-0.9
965
Tumor
-0.9
523
Tumor
-1.0
1027
Tumor
-1.0
573
Tumor
-1.1
285
Tumor
-1.1
545
Tumor
-1.2
517
Tumor
-1.2
967
Tumor
-1.3
537
Tumor
-1.4
567
Tumor
-1.5
743
Tumor
-1.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
