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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXO21 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
39.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
23.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
19.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
15.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
14.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
14.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
13.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
12.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
11.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
11.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
10.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
9.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
9.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
9.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
8.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
7.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
7.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
7.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
7.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
7.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
7.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
7.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
6.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.7
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.6
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
6.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
6.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
5.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
5.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
5.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
5.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
4.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
4.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
4.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
4.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
3.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
3.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
3.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
3.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
2.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
1.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBXO21 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
231
Samples
Sample
Description
TPM
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
22.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
17.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
15.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
15.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
13.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
12.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
11.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
11.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
10.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
8.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.5
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
7.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.4
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
7.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
6.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
6.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
6.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
6.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
6.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
5.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
5.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
5.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
5.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.5
DO45211
0 years, male, NA, stage:3, alive, 240 days
5.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
5.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
5.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
5.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
5.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
4.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
4.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
4.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
4.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
4.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
4.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
4.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
4.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
3.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
3.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
3.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
3.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
3.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
3.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
3.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
2.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
2.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
2.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
2.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
2.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
2.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.6
463
Tumor
0.8
743
Tumor
0.8
472
Normal
0.8
147
Tumor
0.7
343
Tumor
0.7
671
Tumor
0.7
965
Tumor
0.7
672
Normal
0.7
474
Normal
0.7
447
Tumor
0.7
865
Tumor
0.7
478
Normal
0.7
938
Normal
0.7
351
Tumor
0.6
967
Tumor
0.6
545
Tumor
0.6
975
Tumor
0.6
956
Normal
0.6
285
Tumor
0.5
231
Tumor
0.5
813
Tumor
0.5
536
Normal
0.5
384
Normal
0.5
661
Tumor
0.5
573
Tumor
0.5
462
Normal
0.4
368
Normal
0.4
1013
Tumor
0.4
355
Tumor
0.4
877
Tumor
0.4
411
Tumor
0.4
954
Normal
0.4
881
Tumor
0.4
1044
Normal
0.4
698
Normal
0.4
491
Tumor
0.4
912
Normal
0.4
427
Tumor
0.4
738
Normal
0.4
498
Normal
0.4
745
Tumor
0.4
482
Normal
0.4
943
Tumor
0.3
662
Normal
0.3
481
Tumor
0.3
664
Normal
0.3
744
Normal
0.3
125
Tumor
0.3
461
Tumor
0.3
957
Tumor
0.3
983
Tumor
0.3
488
Normal
0.3
538
Normal
0.3
746
Normal
0.3
1046
Normal
0.3
451
Tumor
0.3
366
Normal
0.3
494
Normal
0.3
1014
Normal
0.3
952
Normal
0.3
448
Normal
0.3
224
Normal
0.3
298
Normal
0.3
473
Tumor
0.2
171
Tumor
0.2
1043
Tumor
0.2
713
Tumor
0.2
864
Normal
0.2
332
Normal
0.2
362
Normal
0.2
1032
Normal
0.2
342
Normal
0.2
963
Tumor
0.2
477
Tumor
0.2
297
Tumor
0.2
546
Normal
0.2
272
Normal
0.2
412
Normal
0.2
882
Normal
0.2
554
Normal
0.2
884
Normal
0.2
1031
Tumor
0.2
277
Tumor
0.2
814
Normal
0.2
497
Tumor
0.2
917
Tumor
0.2
756
Normal
0.2
278
Normal
0.2
492
Normal
0.2
878
Normal
0.2
861
Tumor
0.2
958
Normal
0.2
1042
Normal
0.2
966
Normal
0.2
982
Normal
0.2
742
Normal
0.1
284
Normal
0.1
715
Tumor
0.1
376
Normal
0.1
232
Normal
0.1
984
Normal
0.1
663
Tumor
0.1
356
Normal
0.1
228
Normal
0.1
723
Tumor
0.1
466
Normal
0.1
817
Tumor
0.1
944
Normal
0.1
977
Tumor
0.1
648
Normal
0.1
716
Normal
0.1
666
Normal
0.1
314
Normal
0.1
434
Normal
0.1
685
Tumor
0.1
697
Tumor
0.1
976
Normal
0.1
283
Tumor
0.1
484
Normal
0.1
955
Tumor
0.1
227
Tumor
0.1
852
Normal
0.1
924
Normal
0.1
268
Normal
0.1
124
Normal
0.1
468
Normal
0.1
1026
Normal
0.1
142
Normal
0.1
978
Normal
0.1
262
Normal
0.1
286
Normal
0.1
375
Tumor
0.0
271
Tumor
0.0
452
Normal
0.0
258
Normal
0.0
964
Normal
0.0
534
Normal
0.0
128
Normal
0.0
535
Tumor
0.0
823
Tumor
0.0
354
Normal
0.0
728
Normal
0.0
344
Normal
0.0
914
Normal
0.0
331
Tumor
0.0
862
Normal
0.0
714
Normal
0.0
1022
Normal
0.0
416
Normal
0.0
1025
Tumor
0.0
493
Tumor
0.0
533
Tumor
0.0
212
Normal
0.0
364
Normal
0.0
923
Tumor
0.0
528
Normal
-0.1
968
Normal
-0.1
567
Tumor
-0.1
455
Tumor
-0.1
866
Normal
-0.1
686
Normal
-0.1
465
Tumor
-0.1
358
Normal
-0.1
526
Normal
-0.1
517
Tumor
-0.1
388
Normal
-0.1
721
Tumor
-0.1
1016
Normal
-0.1
392
Normal
-0.1
921
Tumor
-0.1
722
Normal
-0.1
696
Normal
-0.1
568
Normal
-0.1
483
Tumor
-0.1
213
Tumor
-0.1
146
Normal
-0.1
617
Tumor
-0.1
778
Normal
-0.1
918
Normal
-0.1
523
Tumor
-0.1
365
Tumor
-0.1
313
Tumor
-0.1
641
Tumor
-0.1
257
Tumor
-0.1
574
Normal
-0.1
363
Tumor
-0.1
352
Normal
-0.2
394
Normal
-0.2
571
Tumor
-0.2
311
Tumor
-0.2
524
Normal
-0.2
874
Normal
-0.2
422
Normal
-0.2
557
Tumor
-0.2
386
Normal
-0.2
421
Tumor
-0.2
161
Tumor
-0.2
951
Tumor
-0.2
113
Tumor
-0.2
815
Tumor
-0.2
415
Tumor
-0.2
114
Normal
-0.2
695
Tumor
-0.2
261
Tumor
-0.2
514
Normal
-0.2
916
Normal
-0.2
414
Normal
-0.2
515
Tumor
-0.2
192
Normal
-0.2
214
Normal
-0.2
267
Tumor
-0.2
922
Normal
-0.2
665
Tumor
-0.2
423
Tumor
-0.2
135
Tumor
-0.2
858
Normal
-0.2
136
Normal
-0.2
328
Normal
-0.2
456
Normal
-0.2
937
Tumor
-0.2
111
Normal
-0.2
1028
Normal
-0.2
1021
Tumor
-0.2
642
Normal
-0.3
126
Normal
-0.3
953
Tumor
-0.3
138
Normal
-0.3
563
Tumor
-0.3
857
Tumor
-0.3
618
Normal
-0.3
1045
Tumor
-0.3
926
Normal
-0.3
518
Normal
-0.3
385
Tumor
-0.3
312
Normal
-0.3
647
Tumor
-0.3
185
Tumor
-0.3
553
Tumor
-0.3
327
Tumor
-0.3
516
Normal
-0.3
145
Tumor
-0.3
525
Tumor
-0.3
487
Tumor
-0.3
445
Tumor
-0.3
816
Normal
-0.3
464
Normal
-0.3
413
Tumor
-0.3
424
Normal
-0.3
558
Normal
-0.4
537
Tumor
-0.4
741
Tumor
-0.4
436
Normal
-0.4
132
Normal
-0.4
443
Tumor
-0.4
868
Normal
-0.4
391
Tumor
-0.4
367
Tumor
-0.4
785
Tumor
-0.4
221
Tumor
-0.4
824
Normal
-0.4
572
Normal
-0.4
426
Normal
-0.4
211
Tumor
-0.4
737
Tumor
-0.4
915
Tumor
-0.4
527
Tumor
-0.4
396
Normal
-0.4
446
Normal
-0.4
467
Tumor
-0.4
383
Tumor
-0.4
471
Tumor
-0.4
431
Tumor
-0.4
564
Normal
-0.5
428
Normal
-0.5
435
Tumor
-0.5
196
Normal
-0.5
628
Normal
-0.5
357
Tumor
-0.5
981
Tumor
-0.5
873
Tumor
-0.5
513
Tumor
-0.5
123
Tumor
-0.5
818
Normal
-0.5
883
Tumor
-0.5
432
Normal
-0.5
425
Tumor
-0.5
361
Tumor
-0.5
727
Tumor
-0.5
724
Normal
-0.5
636
Normal
-0.5
616
Normal
-0.6
393
Tumor
-0.6
1027
Tumor
-0.6
786
Normal
-0.6
911
Tumor
-0.6
223
Tumor
-0.6
444
Normal
-0.6
755
Tumor
-0.6
1015
Tumor
-0.6
433
Tumor
-0.6
851
Tumor
-0.6
395
Tumor
-0.6
188
Normal
-0.6
867
Tumor
-0.6
112
Tumor
-0.7
913
Tumor
-0.7
186
Normal
-0.7
141
Tumor
-0.7
1041
Tumor
-0.7
217
Tumor
-0.7
137
Tumor
-0.7
222
Normal
-0.7
127
Tumor
-0.7
341
Tumor
-0.7
218
Normal
-0.8
195
Tumor
-0.8
353
Tumor
-0.8
925
Tumor
-0.9
387
Tumor
-1.0
615
Tumor
-1.0
191
Tumor
-1.0
863
Tumor
-1.0
635
Tumor
-1.0
187
Tumor
-1.0
172
Normal
-1.1
627
Tumor
-1.1
162
Normal
-1.2
777
Tumor
-1.2
148
Normal
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
