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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP30 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
33.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
32.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
31.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
27.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
25.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
25.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
23.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
21.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
21.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
18.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
17.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
17.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
17.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
16.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
15.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
14.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
14.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
13.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
13.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
12.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
12.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
12.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
11.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
11.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
10.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
10.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
10.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
10.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
10.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
9.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
8.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
7.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
6.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
6.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
5.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
5.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
4.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
3.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
3.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
USP30 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.6
Number of samples
231
Samples
Sample
Description
TPM
DO50809
0 years, male, NA, stage:3, dead, 720 days
18.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
17.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
14.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
13.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
13.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
11.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
10.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
9.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
9.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
8.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
8.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
8.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
7.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
7.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
7.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
6.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
6.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
5.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
5.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
5.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
5.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
5.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
5.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
4.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
4.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
4.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
4.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
4.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
4.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
4.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
4.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
3.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
3.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
3.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
3.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
3.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
2.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
2.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
2.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
2.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.8
DO45245
0 years, female, NA, stage:2, dead, 240 days
1.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.4
777
Tumor
1.0
663
Tumor
1.0
171
Tumor
0.9
635
Tumor
0.8
533
Tumor
0.7
112
Tumor
0.7
618
Normal
0.6
358
Normal
0.6
147
Tumor
0.5
1046
Normal
0.5
915
Tumor
0.5
257
Tumor
0.5
411
Tumor
0.5
491
Tumor
0.5
186
Normal
0.5
745
Tumor
0.5
553
Tumor
0.4
1045
Tumor
0.4
111
Normal
0.4
641
Tumor
0.4
642
Normal
0.4
127
Tumor
0.4
354
Normal
0.4
436
Normal
0.4
925
Tumor
0.4
114
Normal
0.4
627
Tumor
0.4
393
Tumor
0.4
124
Normal
0.4
123
Tumor
0.4
867
Tumor
0.4
967
Tumor
0.4
465
Tumor
0.4
357
Tumor
0.4
534
Normal
0.4
342
Normal
0.4
162
Normal
0.4
361
Tumor
0.4
455
Tumor
0.3
785
Tumor
0.3
131
Tumor
0.3
351
Tumor
0.3
743
Tumor
0.3
384
Normal
0.3
727
Tumor
0.3
423
Tumor
0.3
515
Tumor
0.3
446
Normal
0.3
172
Normal
0.3
953
Tumor
0.3
981
Tumor
0.3
443
Tumor
0.3
135
Tumor
0.3
113
Tumor
0.3
422
Normal
0.3
126
Normal
0.3
636
Normal
0.3
921
Tumor
0.3
128
Normal
0.3
145
Tumor
0.3
148
Normal
0.3
452
Normal
0.3
367
Tumor
0.3
647
Tumor
0.3
873
Tumor
0.3
665
Tumor
0.3
487
Tumor
0.3
911
Tumor
0.3
616
Normal
0.3
741
Tumor
0.3
746
Normal
0.3
227
Tumor
0.3
648
Normal
0.3
865
Tumor
0.3
435
Tumor
0.2
567
Tumor
0.2
742
Normal
0.2
341
Tumor
0.2
353
Tumor
0.2
664
Normal
0.2
1044
Normal
0.2
862
Normal
0.2
1032
Normal
0.2
314
Normal
0.2
431
Tumor
0.2
497
Tumor
0.2
187
Tumor
0.2
1013
Tumor
0.2
1022
Normal
0.2
161
Tumor
0.2
445
Tumor
0.2
388
Normal
0.2
352
Normal
0.2
412
Normal
0.2
332
Normal
0.2
362
Normal
0.2
432
Normal
0.2
132
Normal
0.2
426
Normal
0.2
383
Tumor
0.2
365
Tumor
0.2
861
Tumor
0.2
938
Normal
0.2
298
Normal
0.2
356
Normal
0.2
628
Normal
0.2
416
Normal
0.2
192
Normal
0.1
231
Tumor
0.1
125
Tumor
0.1
1042
Normal
0.1
313
Tumor
0.1
721
Tumor
0.1
617
Tumor
0.1
278
Normal
0.1
672
Normal
0.1
715
Tumor
0.1
428
Normal
0.1
261
Tumor
0.1
965
Tumor
0.1
615
Tumor
0.1
444
Normal
0.1
258
Normal
0.1
1026
Normal
0.1
395
Tumor
0.1
666
Normal
0.1
185
Tumor
0.1
366
Normal
0.1
344
Normal
0.1
386
Normal
0.1
448
Normal
0.1
882
Normal
0.1
944
Normal
0.1
271
Tumor
0.1
222
Normal
0.1
1028
Normal
0.1
912
Normal
0.1
461
Tumor
0.1
424
Normal
0.1
514
Normal
0.1
816
Normal
0.1
744
Normal
0.1
878
Normal
0.1
695
Tumor
0.1
136
Normal
0.1
328
Normal
0.1
196
Normal
0.1
526
Normal
0.1
874
Normal
0.1
866
Normal
0.1
698
Normal
0.1
1025
Tumor
0.1
955
Tumor
0.1
482
Normal
0.1
713
Tumor
0.1
414
Normal
0.1
421
Tumor
0.1
554
Normal
0.1
368
Normal
0.0
546
Normal
0.0
394
Normal
0.0
977
Tumor
0.0
568
Normal
0.0
385
Tumor
0.0
214
Normal
0.0
427
Tumor
0.0
481
Tumor
0.0
571
Tumor
0.0
737
Tumor
0.0
363
Tumor
0.0
413
Tumor
0.0
464
Normal
0.0
868
Normal
0.0
685
Tumor
0.0
137
Tumor
0.0
195
Tumor
0.0
463
Tumor
0.0
723
Tumor
0.0
523
Tumor
0.0
343
Tumor
0.0
755
Tumor
0.0
277
Tumor
0.0
146
Normal
0.0
513
Tumor
0.0
858
Normal
0.0
375
Tumor
0.0
722
Normal
0.0
937
Tumor
0.0
376
Normal
0.0
477
Tumor
0.0
984
Normal
0.0
528
Normal
0.0
662
Normal
0.0
462
Normal
0.0
188
Normal
0.0
563
Tumor
0.0
696
Normal
0.0
138
Normal
0.0
396
Normal
0.0
815
Tumor
0.0
884
Normal
0.0
738
Normal
0.0
716
Normal
0.0
434
Normal
0.0
433
Tumor
-0.1
468
Normal
-0.1
1043
Tumor
-0.1
686
Normal
-0.1
864
Normal
-0.1
786
Normal
-0.1
392
Normal
-0.1
557
Tumor
-0.1
956
Normal
-0.1
527
Tumor
-0.1
425
Tumor
-0.1
364
Normal
-0.1
387
Tumor
-0.1
964
Normal
-0.1
714
Normal
-0.1
232
Normal
-0.1
474
Normal
-0.1
671
Tumor
-0.1
471
Tumor
-0.1
312
Normal
-0.1
284
Normal
-0.1
924
Normal
-0.1
456
Normal
-0.1
922
Normal
-0.1
1016
Normal
-0.1
525
Tumor
-0.1
1014
Normal
-0.1
728
Normal
-0.1
218
Normal
-0.1
952
Normal
-0.1
818
Normal
-0.2
472
Normal
-0.2
982
Normal
-0.2
538
Normal
-0.2
943
Tumor
-0.2
142
Normal
-0.2
484
Normal
-0.2
1031
Tumor
-0.2
954
Normal
-0.2
813
Tumor
-0.2
823
Tumor
-0.2
756
Normal
-0.2
918
Normal
-0.2
213
Tumor
-0.2
545
Tumor
-0.2
141
Tumor
-0.2
488
Normal
-0.2
857
Tumor
-0.2
518
Normal
-0.2
524
Normal
-0.2
268
Normal
-0.2
1041
Tumor
-0.2
473
Tumor
-0.2
966
Normal
-0.2
191
Tumor
-0.2
493
Tumor
-0.2
228
Normal
-0.2
851
Tumor
-0.2
516
Normal
-0.2
466
Normal
-0.2
778
Normal
-0.3
926
Normal
-0.3
573
Tumor
-0.3
355
Tumor
-0.3
958
Normal
-0.3
483
Tumor
-0.3
297
Tumor
-0.3
863
Tumor
-0.3
447
Tumor
-0.3
492
Normal
-0.3
331
Tumor
-0.3
327
Tumor
-0.3
536
Normal
-0.3
391
Tumor
-0.3
824
Normal
-0.3
217
Tumor
-0.3
221
Tumor
-0.3
914
Normal
-0.3
535
Tumor
-0.3
923
Tumor
-0.3
877
Tumor
-0.3
916
Normal
-0.3
976
Normal
-0.3
883
Tumor
-0.3
983
Tumor
-0.3
968
Normal
-0.3
1015
Tumor
-0.4
262
Normal
-0.4
267
Tumor
-0.4
724
Normal
-0.4
963
Tumor
-0.4
1027
Tumor
-0.4
498
Normal
-0.4
467
Tumor
-0.4
494
Normal
-0.4
951
Tumor
-0.5
478
Normal
-0.5
978
Normal
-0.5
574
Normal
-0.5
451
Tumor
-0.5
814
Normal
-0.5
558
Normal
-0.5
975
Tumor
-0.5
415
Tumor
-0.5
852
Normal
-0.5
881
Tumor
-0.5
913
Tumor
-0.6
564
Normal
-0.6
537
Tumor
-0.6
286
Normal
-0.6
283
Tumor
-0.6
572
Normal
-0.6
223
Tumor
-0.6
517
Tumor
-0.6
817
Tumor
-0.6
697
Tumor
-0.6
212
Normal
-0.7
917
Tumor
-0.7
1021
Tumor
-0.7
311
Tumor
-0.7
661
Tumor
-0.8
285
Tumor
-0.8
224
Normal
-1.0
211
Tumor
-1.2
272
Normal
-2.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
