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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ISCA1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
65.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
62.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
59.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
58.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
58.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
53.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
53.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
46.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
45.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
44.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
43.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
41.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
41.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
41.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
40.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
38.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
38.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
37.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
36.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
36.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
35.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
35.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
34.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
34.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
33.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
33.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
33.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
33.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
32.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
32.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
32.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
31.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
31.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
31.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
31.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
30.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
29.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
29.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
29.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
29.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
29.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
29.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
28.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
28.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
28.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
28.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
27.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
27.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
27.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
27.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
27.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
27.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
27.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
26.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
26.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
26.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
26.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
26.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
26.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
26.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
26.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
26.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
25.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
25.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
25.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
25.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
25.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
25.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
25.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
25.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
25.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
25.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
25.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
25.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
24.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
24.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
24.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
24.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
24.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
24.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
24.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
24.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
23.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
23.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
23.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
23.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
23.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
23.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
23.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
23.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
23.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
23.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
23.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
23.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
22.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
22.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
22.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
22.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
22.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
22.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
22.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
22.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
21.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
21.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
21.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
21.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
20.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
20.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
20.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
20.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
20.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
20.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
19.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
19.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
19.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
19.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
19.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
19.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
19.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
18.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
18.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
18.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
18.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
18.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
18.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
18.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
18.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
17.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
17.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
17.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
17.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
17.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
17.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
17.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
17.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
16.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
16.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
16.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
16.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
16.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
16.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
16.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
16.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
16.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
16.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
15.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
15.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
15.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
15.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
15.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
15.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
15.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
15.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
15.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
14.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
14.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
14.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
14.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
13.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
13.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
13.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
13.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
12.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
12.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
12.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
12.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
11.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
9.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
9.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ISCA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.2
Number of samples
231
Samples
Sample
Description
TPM
DO48757
0 years, female, NA, stage:3, alive, 480 days
46.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
44.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
40.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
39.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
37.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
37.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
36.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
36.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
35.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
34.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
32.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
32.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
31.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
31.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
31.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
30.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
29.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
29.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
28.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
27.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
27.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
27.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
26.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
26.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
26.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
25.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
25.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
25.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
25.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
25.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
24.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
24.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
24.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
24.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
23.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
23.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
23.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
23.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
23.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
23.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
23.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
21.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
21.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
20.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
20.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
20.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
20.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
19.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
19.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
19.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
19.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
19.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
19.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
19.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
18.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
18.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
18.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
18.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
18.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
18.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
18.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
18.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
18.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
18.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
17.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
17.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
17.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
17.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
17.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
16.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
16.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
16.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
16.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
16.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
16.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
16.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
15.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
15.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
15.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
15.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
15.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
15.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
15.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
14.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
14.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
13.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
13.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
13.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
12.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
12.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
12.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
11.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
11.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
11.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
11.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
11.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
10.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
9.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
7.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
1.8
724
Normal
1.2
537
Tumor
1.2
513
Tumor
1.2
341
Tumor
1.1
915
Tumor
1.1
477
Tumor
1.0
327
Tumor
1.0
451
Tumor
1.0
533
Tumor
0.9
231
Tumor
0.9
425
Tumor
0.9
465
Tumor
0.9
171
Tumor
0.9
123
Tumor
0.9
515
Tumor
0.9
967
Tumor
0.8
1025
Tumor
0.8
517
Tumor
0.8
627
Tumor
0.8
113
Tumor
0.8
483
Tumor
0.8
911
Tumor
0.8
713
Tumor
0.8
615
Tumor
0.7
161
Tumor
0.7
365
Tumor
0.7
977
Tumor
0.7
695
Tumor
0.7
1013
Tumor
0.6
921
Tumor
0.6
925
Tumor
0.6
727
Tumor
0.6
913
Tumor
0.5
435
Tumor
0.5
452
Normal
0.5
742
Normal
0.5
227
Tumor
0.5
1031
Tumor
0.4
965
Tumor
0.4
534
Normal
0.4
851
Tumor
0.4
415
Tumor
0.4
257
Tumor
0.4
147
Tumor
0.4
746
Normal
0.4
1041
Tumor
0.4
393
Tumor
0.4
567
Tumor
0.4
427
Tumor
0.4
636
Normal
0.4
564
Normal
0.4
391
Tumor
0.4
862
Normal
0.4
926
Normal
0.4
1015
Tumor
0.4
484
Normal
0.4
127
Tumor
0.4
1022
Normal
0.4
951
Tumor
0.4
356
Normal
0.3
968
Normal
0.3
786
Normal
0.3
696
Normal
0.3
883
Tumor
0.3
944
Normal
0.3
648
Normal
0.3
1032
Normal
0.3
924
Normal
0.3
884
Normal
0.3
722
Normal
0.3
145
Tumor
0.3
916
Normal
0.3
868
Normal
0.3
162
Normal
0.3
714
Normal
0.3
258
Normal
0.3
777
Tumor
0.3
553
Tumor
0.3
112
Tumor
0.3
756
Normal
0.3
1016
Normal
0.3
546
Normal
0.3
861
Tumor
0.3
978
Normal
0.3
953
Tumor
0.3
342
Normal
0.3
864
Normal
0.3
314
Normal
0.3
328
Normal
0.3
958
Normal
0.3
514
Normal
0.3
358
Normal
0.2
923
Tumor
0.2
214
Normal
0.2
232
Normal
0.2
738
Normal
0.2
1026
Normal
0.2
518
Normal
0.2
1046
Normal
0.2
538
Normal
0.2
411
Tumor
0.2
428
Normal
0.2
1043
Tumor
0.2
222
Normal
0.2
1014
Normal
0.2
723
Tumor
0.2
716
Normal
0.2
966
Normal
0.2
368
Normal
0.2
488
Normal
0.2
218
Normal
0.2
186
Normal
0.2
362
Normal
0.2
354
Normal
0.2
572
Normal
0.2
332
Normal
0.2
741
Tumor
0.2
1027
Tumor
0.2
491
Tumor
0.2
824
Normal
0.2
858
Normal
0.2
873
Tumor
0.2
462
Normal
0.2
1042
Normal
0.2
664
Normal
0.2
912
Normal
0.2
984
Normal
0.2
686
Normal
0.2
964
Normal
0.2
882
Normal
0.2
494
Normal
0.2
472
Normal
0.2
874
Normal
0.2
618
Normal
0.2
878
Normal
0.2
111
Normal
0.2
818
Normal
0.2
918
Normal
0.2
698
Normal
0.2
191
Tumor
0.2
558
Normal
0.1
298
Normal
0.1
728
Normal
0.1
312
Normal
0.1
852
Normal
0.1
136
Normal
0.1
228
Normal
0.1
778
Normal
0.1
284
Normal
0.1
785
Tumor
0.1
568
Normal
0.1
461
Tumor
0.1
376
Normal
0.1
914
Normal
0.1
414
Normal
0.1
412
Normal
0.1
426
Normal
0.1
697
Tumor
0.1
922
Normal
0.1
574
Normal
0.1
396
Normal
0.1
344
Normal
0.1
278
Normal
0.1
286
Normal
0.1
262
Normal
0.1
952
Normal
0.1
474
Normal
0.1
642
Normal
0.1
132
Normal
0.1
628
Normal
0.1
446
Normal
0.1
212
Normal
0.1
448
Normal
0.1
745
Tumor
0.1
938
Normal
0.1
554
Normal
0.1
963
Tumor
0.1
662
Normal
0.1
196
Normal
0.1
573
Tumor
0.1
866
Normal
0.1
187
Tumor
0.1
128
Normal
0.1
388
Normal
0.1
937
Tumor
0.1
394
Normal
0.1
364
Normal
0.1
172
Normal
0.1
464
Normal
0.1
436
Normal
0.1
366
Normal
0.1
363
Tumor
0.1
755
Tumor
0.1
138
Normal
0.0
867
Tumor
0.0
433
Tumor
0.0
422
Normal
0.0
416
Normal
0.0
1028
Normal
0.0
188
Normal
0.0
528
Normal
0.0
432
Normal
0.0
616
Normal
0.0
982
Normal
0.0
352
Normal
0.0
976
Normal
0.0
816
Normal
0.0
261
Tumor
0.0
981
Tumor
0.0
1044
Normal
0.0
481
Tumor
0.0
423
Tumor
0.0
721
Tumor
0.0
424
Normal
0.0
1045
Tumor
0.0
142
Normal
0.0
563
Tumor
0.0
666
Normal
0.0
744
Normal
0.0
571
Tumor
0.0
468
Normal
0.0
983
Tumor
-0.1
482
Normal
-0.1
456
Normal
-0.1
525
Tumor
-0.1
361
Tumor
-0.1
466
Normal
-0.1
557
Tumor
-0.1
857
Tumor
-0.1
386
Normal
-0.1
272
Normal
-0.1
955
Tumor
-0.1
126
Normal
-0.1
114
Normal
-0.1
434
Normal
-0.1
473
Tumor
-0.1
672
Normal
-0.1
954
Normal
-0.1
148
Normal
-0.1
463
Tumor
-0.1
863
Tumor
-0.1
146
Normal
-0.1
217
Tumor
-0.1
516
Normal
-0.1
956
Normal
-0.2
141
Tumor
-0.2
353
Tumor
-0.2
268
Normal
-0.2
743
Tumor
-0.2
355
Tumor
-0.2
943
Tumor
-0.2
383
Tumor
-0.2
1021
Tumor
-0.2
392
Normal
-0.2
526
Normal
-0.2
617
Tumor
-0.2
536
Normal
-0.2
384
Normal
-0.2
195
Tumor
-0.2
213
Tumor
-0.2
137
Tumor
-0.2
535
Tumor
-0.2
192
Normal
-0.2
665
Tumor
-0.2
685
Tumor
-0.2
221
Tumor
-0.2
823
Tumor
-0.3
313
Tumor
-0.3
865
Tumor
-0.3
367
Tumor
-0.3
443
Tumor
-0.3
431
Tumor
-0.3
125
Tumor
-0.3
357
Tumor
-0.3
737
Tumor
-0.3
715
Tumor
-0.3
478
Normal
-0.3
493
Tumor
-0.3
297
Tumor
-0.3
497
Tumor
-0.3
492
Normal
-0.3
641
Tumor
-0.3
124
Normal
-0.3
524
Normal
-0.3
395
Tumor
-0.3
444
Normal
-0.4
223
Tumor
-0.4
185
Tumor
-0.4
387
Tumor
-0.4
498
Normal
-0.4
267
Tumor
-0.4
545
Tumor
-0.4
647
Tumor
-0.5
447
Tumor
-0.5
421
Tumor
-0.5
224
Normal
-0.5
957
Tumor
-0.5
413
Tumor
-0.5
471
Tumor
-0.5
351
Tumor
-0.5
131
Tumor
-0.5
271
Tumor
-0.6
881
Tumor
-0.6
331
Tumor
-0.6
285
Tumor
-0.7
135
Tumor
-0.7
817
Tumor
-0.7
277
Tumor
-0.8
815
Tumor
-0.8
523
Tumor
-0.8
467
Tumor
-0.8
661
Tumor
-0.8
445
Tumor
-0.8
635
Tumor
-0.9
343
Tumor
-0.9
814
Normal
-0.9
975
Tumor
-0.9
375
Tumor
-0.9
311
Tumor
-1.0
813
Tumor
-1.0
917
Tumor
-1.0
283
Tumor
-1.0
877
Tumor
-1.1
663
Tumor
-1.1
527
Tumor
-1.2
455
Tumor
-1.2
385
Tumor
-1.2
671
Tumor
-1.5
211
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.