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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CEMIP2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
84.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
65.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
63.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
57.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
54.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
53.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
50.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
47.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
47.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
45.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
42.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
38.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
35.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
34.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
34.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
34.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
32.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
32.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
32.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
31.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
30.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
30.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
27.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
27.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
27.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
27.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
26.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
25.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
24.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
24.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
23.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
22.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
22.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
22.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
21.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
20.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
20.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
19.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
18.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
18.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
16.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
15.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
15.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
15.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
15.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
14.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
13.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
10.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
10.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
9.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
8.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
7.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
7.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
5.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
5.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
5.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
5.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
5.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
4.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
4.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
4.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
4.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
3.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
3.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
1.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
1.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.2
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
715
Tumor
1.4
983
Tumor
1.3
567
Tumor
1.2
851
Tumor
1.1
451
Tumor
1.1
351
Tumor
1.1
525
Tumor
0.9
665
Tumor
0.9
557
Tumor
0.9
737
Tumor
0.9
523
Tumor
0.9
685
Tumor
0.8
977
Tumor
0.8
171
Tumor
0.8
915
Tumor
0.8
125
Tumor
0.8
533
Tumor
0.8
861
Tumor
0.8
1041
Tumor
0.8
573
Tumor
0.7
367
Tumor
0.7
343
Tumor
0.7
724
Normal
0.7
112
Tumor
0.6
123
Tumor
0.6
413
Tumor
0.6
815
Tumor
0.6
537
Tumor
0.6
617
Tumor
0.6
231
Tumor
0.5
661
Tumor
0.5
425
Tumor
0.5
187
Tumor
0.5
395
Tumor
0.5
463
Tumor
0.5
553
Tumor
0.5
817
Tumor
0.5
1025
Tumor
0.5
491
Tumor
0.5
477
Tumor
0.5
285
Tumor
0.5
535
Tumor
0.5
131
Tumor
0.4
943
Tumor
0.4
863
Tumor
0.4
727
Tumor
0.4
135
Tumor
0.4
545
Tumor
0.4
391
Tumor
0.4
435
Tumor
0.4
497
Tumor
0.4
1031
Tumor
0.3
113
Tumor
0.3
951
Tumor
0.3
213
Tumor
0.3
967
Tumor
0.3
283
Tumor
0.3
473
Tumor
0.3
261
Tumor
0.3
877
Tumor
0.3
923
Tumor
0.3
191
Tumor
0.3
387
Tumor
0.3
814
Normal
0.3
813
Tumor
0.3
917
Tumor
0.3
223
Tumor
0.2
865
Tumor
0.2
913
Tumor
0.2
136
Normal
0.2
493
Tumor
0.2
127
Tumor
0.2
427
Tumor
0.2
916
Normal
0.2
1028
Normal
0.2
257
Tumor
0.2
433
Tumor
0.2
132
Normal
0.2
1021
Tumor
0.2
957
Tumor
0.2
981
Tumor
0.2
663
Tumor
0.2
616
Normal
0.2
642
Normal
0.1
331
Tumor
0.1
1043
Tumor
0.1
422
Normal
0.1
517
Tumor
0.1
1032
Normal
0.1
671
Tumor
0.1
447
Tumor
0.1
615
Tumor
0.1
721
Tumor
0.1
636
Normal
0.1
713
Tumor
0.1
955
Tumor
0.1
568
Normal
0.1
777
Tumor
0.1
267
Tumor
0.1
314
Normal
0.1
963
Tumor
0.1
514
Normal
0.1
697
Tumor
0.1
494
Normal
0.1
1015
Tumor
0.1
436
Normal
0.1
188
Normal
0.1
443
Tumor
0.1
528
Normal
0.1
428
Normal
0.1
483
Tumor
0.1
618
Normal
0.1
416
Normal
0.1
145
Tumor
0.1
666
Normal
0.1
474
Normal
0.1
414
Normal
0.1
741
Tumor
0.1
536
Normal
0.0
312
Normal
0.0
868
Normal
0.0
648
Normal
0.0
487
Tumor
0.0
921
Tumor
0.0
147
Tumor
0.0
482
Normal
0.0
217
Tumor
0.0
526
Normal
0.0
272
Normal
0.0
268
Normal
0.0
745
Tumor
0.0
982
Normal
0.0
128
Normal
0.0
375
Tumor
0.0
534
Normal
0.0
564
Normal
0.0
142
Normal
0.0
574
Normal
0.0
1042
Normal
0.0
478
Normal
0.0
126
Normal
0.0
426
Normal
0.0
361
Tumor
0.0
258
Normal
0.0
524
Normal
0.0
527
Tumor
0.0
114
Normal
0.0
664
Normal
0.0
467
Tumor
0.0
365
Tumor
0.0
628
Normal
0.0
393
Tumor
0.0
964
Normal
0.0
554
Normal
0.0
641
Tumor
0.0
956
Normal
0.0
262
Normal
0.0
271
Tumor
0.0
212
Normal
0.0
424
Normal
0.0
975
Tumor
0.0
468
Normal
0.0
824
Normal
0.0
662
Normal
0.0
138
Normal
0.0
421
Tumor
0.0
492
Normal
0.0
186
Normal
0.0
881
Tumor
0.0
1044
Normal
0.0
355
Tumor
0.0
456
Normal
0.0
311
Tumor
0.0
162
Normal
0.0
464
Normal
-0.1
978
Normal
-0.1
362
Normal
-0.1
218
Normal
-0.1
481
Tumor
-0.1
286
Normal
-0.1
1022
Normal
-0.1
728
Normal
-0.1
328
Normal
-0.1
546
Normal
-0.1
873
Tumor
-0.1
918
Normal
-0.1
466
Normal
-0.1
415
Tumor
-0.1
714
Normal
-0.1
867
Tumor
-0.1
445
Tumor
-0.1
968
Normal
-0.1
857
Tumor
-0.1
1016
Normal
-0.1
452
Normal
-0.1
558
Normal
-0.1
874
Normal
-0.1
376
Normal
-0.1
124
Normal
-0.1
484
Normal
-0.1
385
Tumor
-0.1
572
Normal
-0.1
746
Normal
-0.1
965
Tumor
-0.1
172
Normal
-0.1
866
Normal
-0.1
358
Normal
-0.1
332
Normal
-0.1
862
Normal
-0.1
722
Normal
-0.1
444
Normal
-0.1
386
Normal
-0.1
434
Normal
-0.1
742
Normal
-0.1
161
Tumor
-0.1
111
Normal
-0.1
966
Normal
-0.1
227
Tumor
-0.1
298
Normal
-0.1
672
Normal
-0.1
185
Tumor
-0.1
148
Normal
-0.1
352
Normal
-0.1
222
Normal
-0.1
952
Normal
-0.1
432
Normal
-0.1
976
Normal
-0.1
627
Tumor
-0.1
341
Tumor
-0.1
366
Normal
-0.1
884
Normal
-0.1
465
Tumor
-0.1
518
Normal
-0.1
146
Normal
-0.1
384
Normal
-0.1
852
Normal
-0.1
953
Tumor
-0.1
1046
Normal
-0.1
472
Normal
-0.1
738
Normal
-0.1
515
Tumor
-0.1
912
Normal
-0.1
431
Tumor
-0.1
944
Normal
-0.1
1014
Normal
-0.1
228
Normal
-0.1
864
Normal
-0.1
462
Normal
-0.1
221
Tumor
-0.1
723
Tumor
-0.1
354
Normal
-0.1
383
Tumor
-0.2
984
Normal
-0.2
882
Normal
-0.2
924
Normal
-0.2
911
Tumor
-0.2
563
Tumor
-0.2
461
Tumor
-0.2
938
Normal
-0.2
958
Normal
-0.2
353
Tumor
-0.2
925
Tumor
-0.2
778
Normal
-0.2
498
Normal
-0.2
356
Normal
-0.2
368
Normal
-0.2
284
Normal
-0.2
214
Normal
-0.2
455
Tumor
-0.2
1026
Normal
-0.2
914
Normal
-0.2
423
Tumor
-0.2
232
Normal
-0.2
141
Tumor
-0.2
364
Normal
-0.2
818
Normal
-0.2
278
Normal
-0.2
297
Tumor
-0.2
448
Normal
-0.2
878
Normal
-0.2
342
Normal
-0.2
516
Normal
-0.2
396
Normal
-0.2
313
Tumor
-0.2
538
Normal
-0.2
388
Normal
-0.2
224
Normal
-0.2
394
Normal
-0.2
137
Tumor
-0.2
344
Normal
-0.2
446
Normal
-0.2
716
Normal
-0.2
635
Tumor
-0.2
471
Tumor
-0.2
195
Tumor
-0.2
922
Normal
-0.3
823
Tumor
-0.3
696
Normal
-0.3
488
Normal
-0.3
698
Normal
-0.3
926
Normal
-0.3
858
Normal
-0.3
816
Normal
-0.3
755
Tumor
-0.3
211
Tumor
-0.3
196
Normal
-0.3
412
Normal
-0.3
786
Normal
-0.3
392
Normal
-0.3
192
Normal
-0.3
686
Normal
-0.3
1013
Tumor
-0.3
937
Tumor
-0.3
743
Tumor
-0.3
363
Tumor
-0.3
277
Tumor
-0.4
883
Tumor
-0.4
513
Tumor
-0.4
954
Normal
-0.4
744
Normal
-0.4
756
Normal
-0.4
357
Tumor
-0.4
327
Tumor
-0.4
571
Tumor
-0.5
785
Tumor
-0.5
1045
Tumor
-0.5
695
Tumor
-0.6
647
Tumor
-0.6
411
Tumor
-0.8
1027
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
