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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANXA1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
486.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
326.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
316.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
226.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
194.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
157.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
151.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
118.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
104.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
81.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
76.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
76.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
70.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
69.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
59.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
58.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
57.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
55.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
55.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
54.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
52.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
50.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
50.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
49.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
49.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
45.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
44.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
44.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
44.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
43.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
41.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
41.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
37.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
36.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
36.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
36.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
35.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
35.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
34.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
34.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
34.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
33.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
32.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
32.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
32.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
31.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
30.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
29.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
28.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
27.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
26.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
26.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
26.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
25.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
25.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
24.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
24.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
24.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
24.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
24.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
23.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
23.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
23.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
23.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
22.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
22.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
21.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
21.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
21.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
21.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
21.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
20.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
20.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
20.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
20.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
19.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
19.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
19.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
19.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
18.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
18.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
18.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
17.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
17.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
17.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
17.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
16.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
16.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
16.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
16.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
16.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
16.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
15.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
15.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
15.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
15.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
15.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
14.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
13.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
13.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
13.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
13.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
12.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
12.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
12.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
12.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
12.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
12.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
11.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
11.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
10.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
10.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
10.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
10.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
9.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
9.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
9.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
9.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
8.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
8.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
7.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
5.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
5.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
4.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
2.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANXA1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
66.2
Number of samples
231
Samples
Sample
Description
TPM
DO45211
0 years, male, NA, stage:3, alive, 240 days
4209.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
720.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
668.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
443.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
394.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
286.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
280.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
269.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
245.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
202.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
195.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
155.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
137.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
135.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
135.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
135.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
126.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
125.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
122.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
119.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
111.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
107.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
107.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
106.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
96.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
93.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
90.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
88.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
87.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
83.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
80.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
80.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
78.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
78.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
78.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
69.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
68.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
67.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
66.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
63.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
63.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
63.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
61.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
59.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
59.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
56.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
56.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
56.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
55.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
54.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
54.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
53.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
52.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
52.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
50.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
50.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
49.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
47.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
46.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
46.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
45.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
45.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
45.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
45.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
43.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
43.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
40.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
40.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
40.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
40.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
39.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
38.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
37.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
37.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
37.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
36.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
35.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
35.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
34.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
34.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
34.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
33.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
33.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
33.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
33.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
33.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
33.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
32.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
31.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
31.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
29.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
28.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
28.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
27.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
27.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
27.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
27.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
27.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
26.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
26.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
25.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
25.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
25.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
25.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
25.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
25.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
25.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
24.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
23.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
22.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
18.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
17.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
17.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
16.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
16.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
14.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
14.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
14.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
12.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
11.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
10.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
9.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
9.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
8.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
8.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
7.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
4.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
4.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
2.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
311
Tumor
1.9
491
Tumor
1.5
917
Tumor
1.4
283
Tumor
1.4
536
Normal
1.2
455
Tumor
1.0
192
Normal
1.0
478
Normal
1.0
444
Normal
1.0
492
Normal
0.9
943
Tumor
0.8
916
Normal
0.8
223
Tumor
0.7
185
Tumor
0.7
141
Tumor
0.7
447
Tumor
0.7
817
Tumor
0.7
823
Tumor
0.7
467
Tumor
0.7
563
Tumor
0.7
538
Normal
0.7
343
Tumor
0.6
697
Tumor
0.6
224
Normal
0.6
421
Tumor
0.6
195
Tumor
0.6
498
Normal
0.6
713
Tumor
0.6
814
Normal
0.6
434
Normal
0.6
375
Tumor
0.6
211
Tumor
0.6
721
Tumor
0.5
816
Normal
0.5
516
Normal
0.5
524
Normal
0.5
881
Tumor
0.5
213
Tumor
0.5
813
Tumor
0.5
125
Tumor
0.5
188
Normal
0.5
471
Tumor
0.5
963
Tumor
0.5
975
Tumor
0.5
958
Normal
0.5
297
Tumor
0.5
355
Tumor
0.5
852
Normal
0.4
126
Normal
0.4
146
Normal
0.4
535
Tumor
0.4
385
Tumor
0.4
268
Normal
0.4
461
Tumor
0.4
976
Normal
0.4
363
Tumor
0.3
874
Normal
0.3
386
Normal
0.3
383
Tumor
0.3
661
Tumor
0.3
384
Normal
0.3
857
Tumor
0.3
415
Tumor
0.3
124
Normal
0.3
284
Normal
0.3
545
Tumor
0.3
138
Normal
0.2
716
Normal
0.2
187
Tumor
0.2
365
Tumor
0.2
978
Normal
0.2
493
Tumor
0.2
395
Tumor
0.2
1044
Normal
0.2
1045
Tumor
0.2
191
Tumor
0.2
966
Normal
0.2
272
Normal
0.2
1031
Tumor
0.2
956
Normal
0.2
877
Tumor
0.2
1032
Normal
0.2
364
Normal
0.2
474
Normal
0.2
671
Tumor
0.2
354
Normal
0.2
558
Normal
0.2
525
Tumor
0.1
851
Tumor
0.1
145
Tumor
0.1
1028
Normal
0.1
778
Normal
0.1
1015
Tumor
0.1
982
Normal
0.1
312
Normal
0.1
328
Normal
0.1
924
Normal
0.1
212
Normal
0.1
344
Normal
0.1
352
Normal
0.1
494
Normal
0.1
913
Tumor
0.1
214
Normal
0.0
968
Normal
0.0
686
Normal
0.0
662
Normal
0.0
483
Tumor
0.0
744
Normal
0.0
362
Normal
0.0
472
Normal
0.0
448
Normal
0.0
918
Normal
0.0
394
Normal
0.0
925
Tumor
0.0
366
Normal
0.0
262
Normal
0.0
412
Normal
0.0
938
Normal
0.0
868
Normal
0.0
696
Normal
0.0
574
Normal
0.0
984
Normal
0.0
488
Normal
0.0
884
Normal
0.0
952
Normal
0.0
228
Normal
0.0
433
Tumor
0.0
111
Normal
0.0
332
Normal
0.0
867
Tumor
0.0
1042
Normal
0.0
142
Normal
0.0
137
Tumor
0.0
815
Tumor
0.0
878
Normal
-0.1
785
Tumor
-0.1
396
Normal
-0.1
672
Normal
-0.1
641
Tumor
-0.1
1016
Normal
-0.1
738
Normal
-0.1
923
Tumor
-0.1
786
Normal
-0.1
954
Normal
-0.1
628
Normal
-0.1
922
Normal
-0.1
217
Tumor
-0.1
861
Tumor
-0.1
882
Normal
-0.1
715
Tumor
-0.1
392
Normal
-0.1
883
Tumor
-0.1
818
Normal
-0.1
664
Normal
-0.1
617
Tumor
-0.1
161
Tumor
-0.1
722
Normal
-0.1
427
Tumor
-0.1
518
Normal
-0.1
424
Normal
-0.1
391
Tumor
-0.1
416
Normal
-0.1
114
Normal
-0.1
277
Tumor
-0.2
546
Normal
-0.2
666
Normal
-0.2
136
Normal
-0.2
724
Normal
-0.2
468
Normal
-0.2
218
Normal
-0.2
286
Normal
-0.2
573
Tumor
-0.2
298
Normal
-0.2
723
Tumor
-0.2
463
Tumor
-0.2
367
Tumor
-0.2
278
Normal
-0.2
327
Tumor
-0.2
162
Normal
-0.2
977
Tumor
-0.2
642
Normal
-0.2
926
Normal
-0.2
983
Tumor
-0.2
413
Tumor
-0.2
353
Tumor
-0.2
422
Normal
-0.2
528
Normal
-0.2
466
Normal
-0.2
196
Normal
-0.2
698
Normal
-0.3
914
Normal
-0.3
428
Normal
-0.3
148
Normal
-0.3
921
Tumor
-0.3
514
Normal
-0.3
742
Normal
-0.3
388
Normal
-0.3
1026
Normal
-0.3
446
Normal
-0.3
432
Normal
-0.3
387
Tumor
-0.3
172
Normal
-0.3
864
Normal
-0.3
862
Normal
-0.3
1043
Tumor
-0.3
331
Tumor
-0.3
554
Normal
-0.3
755
Tumor
-0.3
866
Normal
-0.3
756
Normal
-0.3
636
Normal
-0.3
368
Normal
-0.3
858
Normal
-0.4
714
Normal
-0.4
553
Tumor
-0.4
497
Tumor
-0.4
376
Normal
-0.4
777
Tumor
-0.4
186
Normal
-0.4
526
Normal
-0.4
1022
Normal
-0.4
462
Normal
-0.4
113
Tumor
-0.4
534
Normal
-0.4
572
Normal
-0.4
456
Normal
-0.4
964
Normal
-0.4
356
Normal
-0.4
537
Tumor
-0.4
746
Normal
-0.4
564
Normal
-0.4
1046
Normal
-0.4
937
Tumor
-0.4
314
Normal
-0.4
414
Normal
-0.4
484
Normal
-0.4
616
Normal
-0.4
135
Tumor
-0.4
1014
Normal
-0.4
132
Normal
-0.4
824
Normal
-0.4
482
Normal
-0.5
727
Tumor
-0.5
222
Normal
-0.5
358
Normal
-0.5
618
Normal
-0.5
342
Normal
-0.5
863
Tumor
-0.5
513
Tumor
-0.5
955
Tumor
-0.5
627
Tumor
-0.5
452
Normal
-0.5
915
Tumor
-0.5
261
Tumor
-0.5
515
Tumor
-0.5
912
Normal
-0.5
464
Normal
-0.5
443
Tumor
-0.5
258
Normal
-0.5
423
Tumor
-0.6
728
Normal
-0.6
426
Normal
-0.6
341
Tumor
-0.6
527
Tumor
-0.6
232
Normal
-0.6
128
Normal
-0.6
615
Tumor
-0.6
685
Tumor
-0.6
227
Tumor
-0.6
568
Normal
-0.6
221
Tumor
-0.6
436
Normal
-0.6
557
Tumor
-0.6
271
Tumor
-0.6
873
Tumor
-0.6
965
Tumor
-0.7
944
Normal
-0.7
953
Tumor
-0.7
351
Tumor
-0.7
648
Normal
-0.7
665
Tumor
-0.7
1025
Tumor
-0.7
257
Tumor
-0.7
567
Tumor
-0.7
981
Tumor
-0.7
361
Tumor
-0.7
473
Tumor
-0.7
647
Tumor
-0.8
967
Tumor
-0.8
231
Tumor
-0.8
313
Tumor
-0.8
431
Tumor
-0.8
951
Tumor
-0.8
127
Tumor
-0.8
481
Tumor
-0.8
663
Tumor
-0.8
517
Tumor
-0.8
695
Tumor
-0.8
865
Tumor
-0.8
523
Tumor
-0.8
957
Tumor
-0.9
411
Tumor
-0.9
477
Tumor
-0.9
285
Tumor
-0.9
451
Tumor
-0.9
571
Tumor
-0.9
737
Tumor
-1.0
1041
Tumor
-1.0
147
Tumor
-1.0
1013
Tumor
-1.0
533
Tumor
-1.0
487
Tumor
-1.0
445
Tumor
-1.0
465
Tumor
-1.1
267
Tumor
-1.1
171
Tumor
-1.1
425
Tumor
-1.1
745
Tumor
-1.1
743
Tumor
-1.1
393
Tumor
-1.1
1027
Tumor
-1.1
911
Tumor
-1.2
435
Tumor
-1.2
123
Tumor
-1.3
112
Tumor
-1.3
357
Tumor
-1.3
1021
Tumor
-1.3
131
Tumor
-1.3
741
Tumor
-1.4
635
Tumor
-1.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
