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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFK is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
48.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
36.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
25.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
25.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
25.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
25.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
23.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
21.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
21.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
21.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
21.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
20.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
19.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
19.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
18.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
17.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
17.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
17.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
17.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
17.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
16.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
16.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
16.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
16.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
16.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
16.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
16.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
16.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
15.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
15.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
15.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
15.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
14.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
14.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
14.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
14.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
14.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
13.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
13.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
13.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
12.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
12.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
11.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
11.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
11.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
11.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
11.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
10.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
10.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
10.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
10.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
10.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
10.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
10.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
10.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
10.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
9.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
9.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
8.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
8.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
8.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
7.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
7.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.5
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
6.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
4.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RFK is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.0
Number of samples
231
Samples
Sample
Description
TPM
DO48681
0 years, male, NA, stage:2, alive, 900 days
44.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
38.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
36.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
27.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
25.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
23.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
23.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
22.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
21.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
21.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
21.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
20.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
20.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
19.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
19.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
18.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
18.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
17.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
17.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
16.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
16.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
16.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
15.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
15.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
15.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
15.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
14.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
14.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
14.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
14.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
13.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
12.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
12.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
12.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
12.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
11.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
11.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
8.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
8.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
8.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
7.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
6.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
6.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
5.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
4.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
851
Tumor
1.3
627
Tumor
1.1
513
Tumor
1.1
967
Tumor
1.0
365
Tumor
0.9
965
Tumor
0.8
937
Tumor
0.8
341
Tumor
0.7
777
Tumor
0.7
737
Tumor
0.7
617
Tumor
0.7
745
Tumor
0.7
721
Tumor
0.7
877
Tumor
0.7
857
Tumor
0.6
223
Tumor
0.6
953
Tumor
0.6
724
Normal
0.6
955
Tumor
0.6
686
Normal
0.6
537
Tumor
0.6
411
Tumor
0.6
147
Tumor
0.5
865
Tumor
0.5
461
Tumor
0.5
141
Tumor
0.5
983
Tumor
0.5
285
Tumor
0.5
716
Normal
0.5
435
Tumor
0.5
427
Tumor
0.5
1025
Tumor
0.4
873
Tumor
0.4
943
Tumor
0.4
714
Normal
0.4
123
Tumor
0.4
981
Tumor
0.4
375
Tumor
0.4
863
Tumor
0.4
755
Tumor
0.4
277
Tumor
0.4
515
Tumor
0.4
161
Tumor
0.4
523
Tumor
0.4
436
Normal
0.4
463
Tumor
0.4
923
Tumor
0.4
497
Tumor
0.4
615
Tumor
0.4
533
Tumor
0.3
663
Tumor
0.3
727
Tumor
0.3
528
Normal
0.3
915
Tumor
0.3
823
Tumor
0.3
477
Tumor
0.3
696
Normal
0.3
786
Normal
0.3
525
Tumor
0.3
1041
Tumor
0.3
483
Tumor
0.3
257
Tumor
0.3
127
Tumor
0.3
722
Normal
0.3
824
Normal
0.3
432
Normal
0.3
858
Normal
0.3
331
Tumor
0.3
1043
Tumor
0.3
978
Normal
0.2
545
Tumor
0.2
131
Tumor
0.2
913
Tumor
0.2
911
Tumor
0.2
484
Normal
0.2
558
Normal
0.2
313
Tumor
0.2
567
Tumor
0.2
785
Tumor
0.2
573
Tumor
0.2
1013
Tumor
0.2
498
Normal
0.2
866
Normal
0.2
355
Tumor
0.2
488
Normal
0.2
224
Normal
0.2
187
Tumor
0.2
395
Tumor
0.2
695
Tumor
0.2
465
Tumor
0.2
327
Tumor
0.2
815
Tumor
0.2
491
Tumor
0.2
473
Tumor
0.2
852
Normal
0.2
361
Tumor
0.2
425
Tumor
0.2
884
Normal
0.2
462
Normal
0.2
975
Tumor
0.2
487
Tumor
0.2
816
Normal
0.2
212
Normal
0.2
546
Normal
0.2
713
Tumor
0.2
385
Tumor
0.2
534
Normal
0.2
517
Tumor
0.1
742
Normal
0.1
1014
Normal
0.1
818
Normal
0.1
297
Tumor
0.1
741
Tumor
0.1
641
Tumor
0.1
728
Normal
0.1
145
Tumor
0.1
171
Tumor
0.1
125
Tumor
0.1
951
Tumor
0.1
938
Normal
0.1
564
Normal
0.1
723
Tumor
0.1
113
Tumor
0.1
413
Tumor
0.1
328
Normal
0.1
874
Normal
0.1
1031
Tumor
0.1
616
Normal
0.1
1015
Tumor
0.1
862
Normal
0.1
756
Normal
0.1
557
Tumor
0.1
957
Tumor
0.1
312
Normal
0.1
778
Normal
0.1
952
Normal
0.1
1027
Tumor
0.1
481
Tumor
0.1
648
Normal
0.1
912
Normal
0.1
666
Normal
0.1
982
Normal
0.1
715
Tumor
0.1
524
Normal
0.1
286
Normal
0.1
362
Normal
0.1
351
Tumor
0.1
446
Normal
0.0
746
Normal
0.0
572
Normal
0.0
472
Normal
0.0
474
Normal
0.0
493
Tumor
0.0
966
Normal
0.0
868
Normal
0.0
423
Tumor
0.0
665
Tumor
0.0
861
Tumor
0.0
356
Normal
0.0
137
Tumor
0.0
538
Normal
0.0
172
Normal
0.0
882
Normal
0.0
298
Normal
0.0
262
Normal
0.0
921
Tumor
0.0
148
Normal
0.0
1045
Tumor
0.0
956
Normal
0.0
494
Normal
0.0
964
Normal
0.0
635
Tumor
0.0
188
Normal
0.0
492
Normal
0.0
1046
Normal
0.0
864
Normal
0.0
353
Tumor
0.0
883
Tumor
0.0
963
Tumor
0.0
416
Normal
0.0
636
Normal
0.0
867
Tumor
0.0
114
Normal
0.0
514
Normal
0.0
376
Normal
0.0
393
Tumor
0.0
332
Normal
0.0
954
Normal
0.0
111
Normal
0.0
447
Tumor
0.0
968
Normal
0.0
664
Normal
0.0
916
Normal
0.0
553
Tumor
0.0
186
Normal
0.0
574
Normal
0.0
278
Normal
0.0
554
Normal
-0.1
185
Tumor
-0.1
228
Normal
-0.1
396
Normal
-0.1
136
Normal
-0.1
482
Normal
-0.1
518
Normal
-0.1
647
Tumor
-0.1
984
Normal
-0.1
213
Tumor
-0.1
383
Tumor
-0.1
391
Tumor
-0.1
394
Normal
-0.1
925
Tumor
-0.1
464
Normal
-0.1
914
Normal
-0.1
618
Normal
-0.1
135
Tumor
-0.1
222
Normal
-0.1
628
Normal
-0.1
284
Normal
-0.1
698
Normal
-0.1
1032
Normal
-0.1
738
Normal
-0.1
162
Normal
-0.1
455
Tumor
-0.1
314
Normal
-0.1
392
Normal
-0.1
878
Normal
-0.1
918
Normal
-0.1
662
Normal
-0.1
366
Normal
-0.1
1016
Normal
-0.1
412
Normal
-0.1
448
Normal
-0.1
128
Normal
-0.1
344
Normal
-0.1
672
Normal
-0.1
881
Tumor
-0.1
478
Normal
-0.2
142
Normal
-0.2
221
Tumor
-0.2
922
Normal
-0.2
384
Normal
-0.2
926
Normal
-0.2
112
Tumor
-0.2
415
Tumor
-0.2
433
Tumor
-0.2
466
Normal
-0.2
218
Normal
-0.2
343
Tumor
-0.2
283
Tumor
-0.2
817
Tumor
-0.2
196
Normal
-0.2
132
Normal
-0.2
1026
Normal
-0.2
342
Normal
-0.2
191
Tumor
-0.2
227
Tumor
-0.2
386
Normal
-0.2
536
Normal
-0.2
126
Normal
-0.2
642
Normal
-0.2
271
Tumor
-0.2
944
Normal
-0.2
311
Tumor
-0.2
368
Normal
-0.2
414
Normal
-0.2
452
Normal
-0.2
526
Normal
-0.2
364
Normal
-0.2
211
Tumor
-0.2
267
Tumor
-0.2
1044
Normal
-0.2
516
Normal
-0.2
471
Tumor
-0.2
444
Normal
-0.3
1042
Normal
-0.3
685
Tumor
-0.3
467
Tumor
-0.3
426
Normal
-0.3
138
Normal
-0.3
743
Tumor
-0.3
563
Tumor
-0.3
976
Normal
-0.3
527
Tumor
-0.3
261
Tumor
-0.3
217
Tumor
-0.3
1028
Normal
-0.3
387
Tumor
-0.3
917
Tumor
-0.3
434
Normal
-0.3
814
Normal
-0.3
124
Normal
-0.3
232
Normal
-0.3
568
Normal
-0.3
456
Normal
-0.3
1021
Tumor
-0.3
422
Normal
-0.3
571
Tumor
-0.3
388
Normal
-0.3
195
Tumor
-0.3
214
Normal
-0.3
268
Normal
-0.4
924
Normal
-0.4
977
Tumor
-0.4
258
Normal
-0.4
363
Tumor
-0.4
428
Normal
-0.4
451
Tumor
-0.4
468
Normal
-0.4
231
Tumor
-0.4
1022
Normal
-0.4
352
Normal
-0.4
358
Normal
-0.4
192
Normal
-0.4
146
Normal
-0.4
744
Normal
-0.4
958
Normal
-0.4
421
Tumor
-0.4
813
Tumor
-0.5
671
Tumor
-0.5
424
Normal
-0.5
697
Tumor
-0.5
661
Tumor
-0.5
354
Normal
-0.5
367
Tumor
-0.5
431
Tumor
-0.6
443
Tumor
-0.6
357
Tumor
-0.7
535
Tumor
-0.7
272
Normal
-0.7
445
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.