MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:129.0 nTPM
HPA Brain:45.1 nTPM
GTEx:129.0 nTPM
FANTOM5:112.0 Scaled Tags Per Million
Pig:38.4 nTPM
Mouse:76.2 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 45.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.8
1870 Female, age 42, unknown 50.1
2411 Female, age 72, unknown 48.1
2019 Male, age 18, unknown 43.4
1833 Male, age 53, unknown 41.6
1830 Male, age 51, unknown 40.9
1827 Male, age 72, unknown 39.2
2828 Female, age 72, unknown 39.0
2666 Male, age 74, left hemisphere 33.8
2219 Male, age 76, both hemispheres 27.2
2586 Male, age 75, left hemisphere 24.9
Dorsal raphe nucleus
nTPM: 45.0
2298 Female, age 72, unknown 59.8
2016 Female, age 72, unknown 48.0
2750 Male, age 76, both hemispheres 43.9
1828 Male, age 53, unknown 38.6
2047 Male, age 72, unknown 34.5
Inferior colliculus
nTPM: 36.9
2097 Female, age 72, unknown 45.4
1848 Female, age 42, unknown 35.1
1890 Male, age 53, unknown 34.0
2849 Male, age 72, unknown 32.9
Median raphe nucleus
nTPM: 38.5
2220 Male, age 76, midline 38.5
Periaquaductal grey, anterior
nTPM: 40.9
1947 Male, age 18, unknown 44.2
2502 Female, age 75, unknown 43.4
1795 Male, age 51, unknown 35.3
Periaquaductal grey, dorsal
nTPM: 34.4
2850 Male, age 76, both hemispheres 37.7
2464 Female, age 72, unknown 34.5
1831 Male, age 72, unknown 33.8
1840 Male, age 53, unknown 31.7
Periaquaductal grey, lateral
nTPM: 37.9
2272 Male, age 74, both hemispheres 40.2
2053 Male, age 18, unknown 38.1
2140 Male, age 76, both hemispheres 35.4
Pretectal area
nTPM: 39.3
2224 Female, age 72, unknown 46.2
1815 Male, age 53, unknown 45.6
2273 Male, age 74, both hemispheres 41.9
1817 Female, age 42, unknown 41.3
2007 Male, age 72, unknown 40.1
1816 Male, age 51, unknown 38.8
2667 Female, age 75, unknown 38.7
2825 Male, age 18, unknown 36.0
1944 Female, age 72, unknown 35.7
2316 Male, age 76, right hemisphere 35.0
2407 Male, age 75, both hemispheres 32.5
Red nucleus
nTPM: 45.1
1821 Female, age 72, unknown 62.6
2769 Male, age 72, unknown 52.5
1904 Male, age 53, unknown 51.9
1954 Female, age 42, unknown 50.3
2227 Male, age 72, unknown 49.5
1865 Male, age 51, unknown 49.0
2823 Male, age 76, right hemisphere 45.2
2785 Male, age 18, unknown 43.8
2503 Female, age 72, unknown 42.8
2725 Female, age 75, unknown 37.9
2584 Male, age 75, left hemisphere 28.9
2588 Male, age 74, left hemisphere 27.0
Substantia nigra
nTPM: 37.9
1889 Female, age 72, unknown 47.8
1851 Male, age 51, unknown 46.2
1916 Female, age 42, unknown 39.1
1941 Male, age 53, unknown 37.0
2665 Male, age 74, both hemispheres 36.6
2590 Female, age 75, unknown 36.3
2699 Male, age 18, unknown 36.3
2409 Female, age 72, unknown 35.6
2241 Male, age 72, unknown 33.7
2583 Male, age 75, right hemisphere 30.3
Superior colliculus
nTPM: 39.8
1913 Female, age 42, unknown 51.3
2587 Male, age 74, left hemisphere 44.9
2668 Female, age 75, unknown 44.7
1995 Male, age 72, unknown 44.6
1895 Male, age 76, right hemisphere 39.7
1796 Male, age 53, unknown 36.6
2261 Male, age 18, unknown 35.5
1839 Male, age 51, unknown 34.2
2087 Female, age 72, unknown 33.8
2664 Male, age 75, both hemispheres 32.1
Ventral tegmental area
nTPM: 38.0
2410 Female, age 72, unknown 42.9
1915 Female, age 42, unknown 41.0
2223 Female, age 72, unknown 38.0
2021 Male, age 53, unknown 36.4
2218 Male, age 76, both hemispheres 35.3
1942 Male, age 51, unknown 34.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 129.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 129.0
Samples: 139

Max nTPM: 318.0
Min nTPM: 70.1
Std nTPM: 37.9
Median nTPM: 120.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 318.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 309.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 220.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 211.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 210.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 204.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 199.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 197.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 190.8
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 190.2
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 183.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 112.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.0
FF:10158-103A5 76 years, female 112.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 38.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 36.1
Samples: 4

Max nTPM: 51.0
Min nTPM: 28.1
Sample A Female 51.0
Sample B Female 36.1
Sample C Male 28.1
Sample D Male 29.3
Midbrain
nTPM: 38.4
Samples: 4

Max nTPM: 65.2
Min nTPM: 23.6
Sample A Female 65.2
Sample B Female 38.6
Sample C Male 26.1
Sample D Male 23.6
Periaqueductal gray
nTPM: 28.9
Samples: 3

Max nTPM: 32.2
Min nTPM: 25.1
Sample B Female 32.2
Sample C Male 29.5
Sample D Male 25.1
Superior colliculi
nTPM: 36.4
Samples: 4

Max nTPM: 51.1
Min nTPM: 30.0
Sample A Female 51.1
Sample B Female 31.6
Sample C Male 33.0
Sample D Male 30.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 76.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 76.2
Samples: 4

Max nTPM: 87.4
Min nTPM: 67.1
Sample A Male 78.7
Sample B Male 71.4
Sample C Female 67.1
Sample D Female 87.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
74635126 Antisense, RP_060215_03_D06, Mouse strain C57BL/6J (56 days, male) 0.1

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