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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMM10 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
67.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
218.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
209.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
196.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
193.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
177.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
175.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
161.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
149.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
144.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
143.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
139.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
133.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
132.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
132.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
132.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
130.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
129.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
123.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
123.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
121.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
120.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
119.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
118.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
115.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
115.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
115.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
111.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
111.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
109.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
108.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
108.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
108.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
106.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
106.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
106.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
104.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
104.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
103.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
103.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
102.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
101.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
101.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
101.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
100.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
100.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
99.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
98.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
98.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
98.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
97.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
97.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
96.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
96.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
96.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
95.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
94.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
93.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
93.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
92.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
92.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
92.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
91.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
89.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
89.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
89.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
89.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
89.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
88.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
88.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
88.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
88.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
88.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
87.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
87.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
87.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
86.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
86.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
85.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
85.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
85.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
84.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
84.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
82.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
82.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
81.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
81.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
81.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
81.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
81.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
81.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
81.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
80.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
80.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
80.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
80.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
80.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
79.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
79.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
79.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
79.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
79.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
79.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
79.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
79.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
78.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
78.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
78.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
78.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
77.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
76.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
76.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
76.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
75.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
75.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
75.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
75.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
75.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
74.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
74.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
73.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
72.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
72.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
72.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
72.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
72.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
72.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
72.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
72.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
71.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
71.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
71.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
71.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
71.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
71.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
70.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
70.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
70.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
70.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
69.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
69.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
69.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
69.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
69.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
69.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
68.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
68.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
68.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
68.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
67.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
67.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
67.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
67.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
67.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
67.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
66.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
66.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
66.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
66.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
66.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
66.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
66.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
66.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
65.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
65.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
65.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
65.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
65.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
64.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
64.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
64.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
64.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
64.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
63.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
63.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
63.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
62.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
62.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
62.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
62.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
61.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
61.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
61.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
61.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
61.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
61.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
60.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
60.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
60.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
60.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
59.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
59.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
59.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
59.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
59.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
59.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
59.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
59.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
59.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
58.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
58.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
58.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
58.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
57.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
57.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
57.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
57.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
56.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
56.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
56.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
56.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
56.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
55.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
55.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
55.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
55.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
54.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
54.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
54.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
54.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
54.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
54.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
54.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
53.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
53.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
53.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
52.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
52.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
52.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
52.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
52.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
51.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
51.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
51.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
51.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
50.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
50.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
50.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
50.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
50.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
50.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
50.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
50.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
50.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
50.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
49.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
49.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
49.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
49.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
49.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
49.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
49.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
49.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
49.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
48.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
48.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
48.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
48.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
48.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
48.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
48.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
48.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
47.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
47.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
47.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
47.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
47.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
46.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
46.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
46.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
46.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
46.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
46.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
46.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
45.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
45.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
45.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
45.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
45.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
45.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
45.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
45.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
45.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
45.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
45.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
45.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
44.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
44.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
44.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
44.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
44.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
43.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
43.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
43.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
43.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
43.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
43.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
43.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
43.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
43.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
42.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
42.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
42.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
42.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
42.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
41.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
41.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
41.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
41.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
40.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
40.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
40.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
40.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
40.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
40.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
40.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
38.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
38.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
38.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
38.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
38.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
37.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
37.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
37.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
37.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
37.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
36.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
36.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
36.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
36.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
36.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
35.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
35.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
35.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
35.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
34.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
34.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
34.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
33.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
33.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
31.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
30.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
28.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
26.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
26.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
23.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
21.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMM10 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.1
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
136.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
135.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
134.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
110.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
106.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
98.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
98.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
91.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
79.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
79.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
76.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
75.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
73.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
73.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
73.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
71.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
70.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
69.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
67.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
65.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
65.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
65.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
64.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
64.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
62.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
62.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
62.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
60.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
59.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
58.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
58.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
58.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
57.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
56.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
55.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
55.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
55.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
54.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
54.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
54.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
54.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
53.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
53.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
53.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
53.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
52.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
51.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
51.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
51.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
50.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
50.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
49.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
49.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
48.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
48.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
48.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
48.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
48.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
47.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
47.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
47.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
46.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
46.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
46.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
45.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
45.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
45.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
45.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
44.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
44.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
44.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
44.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
44.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
44.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
44.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
43.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
43.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
43.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
43.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
43.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
43.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
42.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
42.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
42.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
41.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
41.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
41.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
41.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
41.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
41.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
40.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
40.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
40.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
40.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
39.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
39.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
39.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
38.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
38.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
38.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
38.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
37.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
37.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
37.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
37.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
37.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
37.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
36.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
36.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
36.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
36.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
36.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
36.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
35.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
35.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
35.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
34.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
34.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
34.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
34.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
34.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
34.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
33.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
33.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
33.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
33.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
32.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
32.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
32.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
32.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
32.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
32.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
31.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
31.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
31.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
31.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
31.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
31.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
31.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
31.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
30.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
30.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
30.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
30.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
30.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
30.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
30.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
30.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
29.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
29.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
29.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
29.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
28.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
28.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
28.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
27.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
27.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
27.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
27.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
27.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
27.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
26.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
26.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
26.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
25.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
25.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
25.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
25.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
25.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
24.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
24.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
24.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
24.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
24.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
24.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
23.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
23.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
22.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
22.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
21.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
21.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
20.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
20.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
19.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
18.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
18.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.2
1025
Tumor
1.1
627
Tumor
1.1
473
Tumor
1.1
911
Tumor
1.1
685
Tumor
1.0
513
Tumor
1.0
1041
Tumor
1.0
477
Tumor
0.9
695
Tumor
0.9
925
Tumor
0.9
745
Tumor
0.9
515
Tumor
0.8
411
Tumor
0.8
227
Tumor
0.7
1031
Tumor
0.7
967
Tumor
0.7
523
Tumor
0.6
1015
Tumor
0.6
715
Tumor
0.6
553
Tumor
0.6
823
Tumor
0.5
741
Tumor
0.5
557
Tumor
0.5
357
Tumor
0.5
755
Tumor
0.5
461
Tumor
0.5
981
Tumor
0.5
135
Tumor
0.5
697
Tumor
0.5
535
Tumor
0.5
355
Tumor
0.5
957
Tumor
0.4
1013
Tumor
0.4
785
Tumor
0.4
863
Tumor
0.4
953
Tumor
0.4
615
Tumor
0.4
527
Tumor
0.4
393
Tumor
0.4
497
Tumor
0.4
471
Tumor
0.4
487
Tumor
0.3
223
Tumor
0.3
867
Tumor
0.3
865
Tumor
0.3
915
Tumor
0.3
481
Tumor
0.3
131
Tumor
0.3
363
Tumor
0.3
737
Tumor
0.3
493
Tumor
0.3
1043
Tumor
0.3
815
Tumor
0.3
727
Tumor
0.3
641
Tumor
0.2
554
Normal
0.2
518
Normal
0.2
483
Tumor
0.2
1045
Tumor
0.2
878
Normal
0.2
313
Tumor
0.2
952
Normal
0.2
663
Tumor
0.2
431
Tumor
0.2
517
Tumor
0.2
698
Normal
0.2
665
Tumor
0.2
861
Tumor
0.2
533
Tumor
0.2
231
Tumor
0.2
963
Tumor
0.2
285
Tumor
0.2
516
Normal
0.2
546
Normal
0.2
857
Tumor
0.2
873
Tumor
0.2
777
Tumor
0.2
221
Tumor
0.2
538
Normal
0.1
161
Tumor
0.1
524
Normal
0.1
977
Tumor
0.1
465
Tumor
0.1
743
Tumor
0.1
137
Tumor
0.1
257
Tumor
0.1
435
Tumor
0.1
478
Normal
0.1
451
Tumor
0.1
922
Normal
0.1
356
Normal
0.1
525
Tumor
0.1
328
Normal
0.1
534
Normal
0.1
528
Normal
0.1
423
Tumor
0.1
474
Normal
0.1
492
Normal
0.1
1026
Normal
0.1
412
Normal
0.1
484
Normal
0.1
395
Tumor
0.0
123
Tumor
0.0
964
Normal
0.0
937
Tumor
0.0
571
Tumor
0.0
526
Normal
0.0
982
Normal
0.0
445
Tumor
0.0
926
Normal
0.0
1014
Normal
0.0
491
Tumor
0.0
965
Tumor
0.0
635
Tumor
0.0
1032
Normal
0.0
267
Tumor
0.0
361
Tumor
0.0
944
Normal
0.0
968
Normal
0.0
883
Tumor
0.0
365
Tumor
0.0
817
Tumor
0.0
462
Normal
0.0
482
Normal
0.0
868
Normal
0.0
228
Normal
0.0
746
Normal
0.0
277
Tumor
0.0
943
Tumor
0.0
636
Normal
0.0
364
Normal
0.0
1046
Normal
0.0
744
Normal
0.0
494
Normal
0.0
976
Normal
0.0
864
Normal
0.0
488
Normal
0.0
938
Normal
0.0
212
Normal
-0.1
913
Tumor
-0.1
332
Normal
-0.1
756
Normal
-0.1
923
Tumor
-0.1
112
Tumor
-0.1
463
Tumor
-0.1
1022
Normal
-0.1
921
Tumor
-0.1
1042
Normal
-0.1
286
Normal
-0.1
297
Tumor
-0.1
392
Normal
-0.1
975
Tumor
-0.1
966
Normal
-0.1
448
Normal
-0.1
954
Normal
-0.1
958
Normal
-0.1
713
Tumor
-0.1
443
Tumor
-0.1
924
Normal
-0.1
984
Normal
-0.1
851
Tumor
-0.1
1028
Normal
-0.1
314
Normal
-0.1
728
Normal
-0.1
383
Tumor
-0.1
142
Normal
-0.1
537
Tumor
-0.1
813
Tumor
-0.1
271
Tumor
-0.1
858
Normal
-0.1
127
Tumor
-0.1
882
Normal
-0.1
536
Normal
-0.1
217
Tumor
-0.1
956
Normal
-0.1
918
Normal
-0.1
514
Normal
-0.1
955
Tumor
-0.1
187
Tumor
-0.1
862
Normal
-0.1
978
Normal
-0.1
881
Tumor
-0.1
616
Normal
-0.1
1016
Normal
-0.1
351
Tumor
-0.1
914
Normal
-0.1
124
Normal
-0.2
696
Normal
-0.2
472
Normal
-0.2
874
Normal
-0.2
738
Normal
-0.2
778
Normal
-0.2
376
Normal
-0.2
498
Normal
-0.2
342
Normal
-0.2
186
Normal
-0.2
816
Normal
-0.2
866
Normal
-0.2
916
Normal
-0.2
148
Normal
-0.2
1021
Tumor
-0.2
416
Normal
-0.2
261
Tumor
-0.2
125
Tumor
-0.2
467
Tumor
-0.2
742
Normal
-0.2
786
Normal
-0.2
284
Normal
-0.2
466
Normal
-0.2
452
Normal
-0.2
224
Normal
-0.2
723
Tumor
-0.2
195
Tumor
-0.2
545
Tumor
-0.2
672
Normal
-0.2
145
Tumor
-0.2
951
Tumor
-0.2
171
Tumor
-0.2
232
Normal
-0.2
1044
Normal
-0.2
172
Normal
-0.2
447
Tumor
-0.2
211
Tumor
-0.2
444
Normal
-0.2
912
Normal
-0.2
394
Normal
-0.2
436
Normal
-0.2
427
Tumor
-0.2
648
Normal
-0.3
218
Normal
-0.3
818
Normal
-0.3
716
Normal
-0.3
686
Normal
-0.3
628
Normal
-0.3
222
Normal
-0.3
824
Normal
-0.3
311
Tumor
-0.3
664
Normal
-0.3
877
Tumor
-0.3
298
Normal
-0.3
185
Tumor
-0.3
618
Normal
-0.3
141
Tumor
-0.3
433
Tumor
-0.3
642
Normal
-0.3
111
Normal
-0.3
128
Normal
-0.3
432
Normal
-0.3
662
Normal
-0.3
191
Tumor
-0.3
714
Normal
-0.3
214
Normal
-0.3
666
Normal
-0.3
196
Normal
-0.3
917
Tumor
-0.3
331
Tumor
-0.3
272
Normal
-0.3
278
Normal
-0.3
283
Tumor
-0.3
446
Normal
-0.3
563
Tumor
-0.3
354
Normal
-0.3
343
Tumor
-0.3
983
Tumor
-0.4
136
Normal
-0.4
852
Normal
-0.4
617
Tumor
-0.4
114
Normal
-0.4
268
Normal
-0.4
162
Normal
-0.4
192
Normal
-0.4
884
Normal
-0.4
391
Tumor
-0.4
426
Normal
-0.4
213
Tumor
-0.4
414
Normal
-0.4
385
Tumor
-0.4
424
Normal
-0.4
671
Tumor
-0.4
258
Normal
-0.4
464
Normal
-0.4
262
Normal
-0.4
344
Normal
-0.4
362
Normal
-0.4
455
Tumor
-0.4
384
Normal
-0.4
312
Normal
-0.4
388
Normal
-0.5
353
Tumor
-0.5
572
Normal
-0.5
434
Normal
-0.5
722
Normal
-0.5
814
Normal
-0.5
138
Normal
-0.5
132
Normal
-0.5
567
Tumor
-0.5
468
Normal
-0.5
126
Normal
-0.5
568
Normal
-0.5
415
Tumor
-0.5
574
Normal
-0.5
387
Tumor
-0.5
327
Tumor
-0.5
564
Normal
-0.5
413
Tumor
-0.5
456
Normal
-0.5
188
Normal
-0.5
147
Tumor
-0.5
396
Normal
-0.5
368
Normal
-0.6
386
Normal
-0.6
366
Normal
-0.6
661
Tumor
-0.6
421
Tumor
-0.6
375
Tumor
-0.6
647
Tumor
-0.6
724
Normal
-0.6
558
Normal
-0.6
721
Tumor
-0.6
422
Normal
-0.6
146
Normal
-0.6
428
Normal
-0.6
358
Normal
-0.6
352
Normal
-0.6
367
Tumor
-0.7
341
Tumor
-0.7
425
Tumor
-0.8
113
Tumor
-0.9
573
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.