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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRPF38A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
11.9
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
9.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
9.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
9.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
9.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
8.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
7.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
7.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
6.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
5.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
5.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
5.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
5.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
5.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
5.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.3
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
5.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
5.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
5.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
5.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
4.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
4.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
4.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
4.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
4.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
3.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
3.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
3.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
3.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
3.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
3.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
3.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
3.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
3.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
3.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
3.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
3.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
3.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
2.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
2.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
2.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
2.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
2.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
2.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
2.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
2.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
2.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
2.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
2.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
2.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
2.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
2.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
2.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
2.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
2.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
2.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
2.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
2.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
1.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRPF38A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.1
Number of samples
231
Samples
Sample
Description
TPM
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
25.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
23.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
21.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
20.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
19.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
18.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
17.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
17.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
17.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
16.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
15.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
14.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
14.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
13.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
13.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
12.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
11.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
11.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
10.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
10.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
8.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
8.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
8.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
8.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
8.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
7.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
7.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
5.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
5.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
0.9
131
Tumor
0.8
355
Tumor
0.8
1021
Tumor
0.7
957
Tumor
0.7
545
Tumor
0.6
743
Tumor
0.6
571
Tumor
0.6
951
Tumor
0.6
533
Tumor
0.6
527
Tumor
0.6
537
Tumor
0.5
1031
Tumor
0.5
661
Tumor
0.5
815
Tumor
0.5
313
Tumor
0.5
647
Tumor
0.5
411
Tumor
0.5
967
Tumor
0.5
425
Tumor
0.5
663
Tumor
0.5
535
Tumor
0.5
351
Tumor
0.4
413
Tumor
0.4
695
Tumor
0.4
112
Tumor
0.4
277
Tumor
0.4
877
Tumor
0.4
227
Tumor
0.4
977
Tumor
0.4
737
Tumor
0.4
983
Tumor
0.4
497
Tumor
0.4
211
Tumor
0.4
367
Tumor
0.4
665
Tumor
0.3
473
Tumor
0.3
1013
Tumor
0.3
727
Tumor
0.3
553
Tumor
0.3
123
Tumor
0.3
357
Tumor
0.3
943
Tumor
0.3
671
Tumor
0.3
883
Tumor
0.3
1025
Tumor
0.3
953
Tumor
0.3
341
Tumor
0.3
431
Tumor
0.3
331
Tumor
0.3
975
Tumor
0.3
523
Tumor
0.3
285
Tumor
0.3
923
Tumor
0.3
881
Tumor
0.3
865
Tumor
0.3
385
Tumor
0.3
573
Tumor
0.3
817
Tumor
0.2
161
Tumor
0.2
433
Tumor
0.2
515
Tumor
0.2
785
Tumor
0.2
487
Tumor
0.2
443
Tumor
0.2
427
Tumor
0.2
777
Tumor
0.2
455
Tumor
0.2
1041
Tumor
0.2
724
Normal
0.2
391
Tumor
0.2
135
Tumor
0.2
557
Tumor
0.2
823
Tumor
0.2
467
Tumor
0.2
268
Normal
0.2
283
Tumor
0.2
861
Tumor
0.2
538
Normal
0.2
463
Tumor
0.1
271
Tumor
0.1
513
Tumor
0.1
162
Normal
0.1
192
Normal
0.1
491
Tumor
0.1
267
Tumor
0.1
477
Tumor
0.1
1027
Tumor
0.1
925
Tumor
0.1
814
Normal
0.1
662
Normal
0.1
685
Tumor
0.1
375
Tumor
0.1
213
Tumor
0.1
813
Tumor
0.1
911
Tumor
0.1
917
Tumor
0.1
126
Normal
0.1
447
Tumor
0.1
343
Tumor
0.1
185
Tumor
0.1
921
Tumor
0.1
471
Tumor
0.1
172
Normal
0.1
517
Tumor
0.1
1015
Tumor
0.1
755
Tumor
0.1
188
Normal
0.1
493
Tumor
0.1
963
Tumor
0.1
221
Tumor
0.1
231
Tumor
0.1
125
Tumor
0.1
554
Normal
0.1
465
Tumor
0.1
666
Normal
0.1
113
Tumor
0.1
217
Tumor
0.0
127
Tumor
0.0
741
Tumor
0.0
461
Tumor
0.0
567
Tumor
0.0
186
Normal
0.0
873
Tumor
0.0
361
Tumor
0.0
937
Tumor
0.0
423
Tumor
0.0
472
Normal
0.0
444
Normal
0.0
478
Normal
0.0
483
Tumor
0.0
311
Tumor
0.0
445
Tumor
0.0
492
Normal
0.0
563
Tumor
0.0
664
Normal
0.0
366
Normal
0.0
171
Tumor
0.0
148
Normal
0.0
966
Normal
0.0
648
Normal
0.0
395
Tumor
0.0
383
Tumor
0.0
516
Normal
0.0
857
Tumor
0.0
915
Tumor
0.0
721
Tumor
0.0
415
Tumor
0.0
498
Normal
0.0
824
Normal
0.0
546
Normal
0.0
1045
Tumor
0.0
434
Normal
0.0
114
Normal
0.0
187
Tumor
0.0
396
Normal
0.0
867
Tumor
0.0
353
Tumor
0.0
1028
Normal
0.0
376
Normal
0.0
851
Tumor
0.0
261
Tumor
0.0
451
Tumor
0.0
314
Normal
0.0
462
Normal
0.0
141
Tumor
0.0
145
Tumor
0.0
918
Normal
0.0
534
Normal
0.0
111
Normal
0.0
342
Normal
0.0
916
Normal
0.0
363
Tumor
0.0
715
Tumor
0.0
386
Normal
0.0
297
Tumor
0.0
195
Tumor
0.0
984
Normal
0.0
358
Normal
0.0
387
Tumor
0.0
223
Tumor
0.0
212
Normal
0.0
388
Normal
0.0
384
Normal
0.0
488
Normal
0.0
435
Tumor
-0.1
863
Tumor
-0.1
1016
Normal
-0.1
913
Tumor
-0.1
878
Normal
-0.1
858
Normal
-0.1
981
Tumor
-0.1
352
Normal
-0.1
474
Normal
-0.1
464
Normal
-0.1
426
Normal
-0.1
432
Normal
-0.1
982
Normal
-0.1
146
Normal
-0.1
818
Normal
-0.1
328
Normal
-0.1
344
Normal
-0.1
536
Normal
-0.1
525
Tumor
-0.1
332
Normal
-0.1
568
Normal
-0.1
272
Normal
-0.1
686
Normal
-0.1
713
Tumor
-0.1
222
Normal
-0.1
616
Normal
-0.1
978
Normal
-0.1
365
Tumor
-0.1
524
Normal
-0.1
394
Normal
-0.1
421
Tumor
-0.1
615
Tumor
-0.1
864
Normal
-0.1
412
Normal
-0.1
124
Normal
-0.1
697
Tumor
-0.1
262
Normal
-0.1
955
Tumor
-0.1
393
Tumor
-0.1
672
Normal
-0.1
696
Normal
-0.1
354
Normal
-0.1
1032
Normal
-0.1
422
Normal
-0.1
1043
Tumor
-0.1
368
Normal
-0.1
635
Tumor
-0.1
137
Tumor
-0.1
778
Normal
-0.1
428
Normal
-0.1
136
Normal
-0.1
312
Normal
-0.1
738
Normal
-0.1
218
Normal
-0.1
1014
Normal
-0.1
938
Normal
-0.1
564
Normal
-0.1
922
Normal
-0.1
196
Normal
-0.1
744
Normal
-0.1
924
Normal
-0.1
572
Normal
-0.1
528
Normal
-0.1
424
Normal
-0.1
228
Normal
-0.1
481
Tumor
-0.1
628
Normal
-0.1
364
Normal
-0.1
147
Tumor
-0.1
257
Tumor
-0.1
414
Normal
-0.2
392
Normal
-0.2
1026
Normal
-0.2
446
Normal
-0.2
356
Normal
-0.2
494
Normal
-0.2
191
Tumor
-0.2
484
Normal
-0.2
954
Normal
-0.2
482
Normal
-0.2
128
Normal
-0.2
526
Normal
-0.2
956
Normal
-0.2
617
Tumor
-0.2
852
Normal
-0.2
214
Normal
-0.2
816
Normal
-0.2
574
Normal
-0.2
138
Normal
-0.2
298
Normal
-0.2
327
Tumor
-0.2
1022
Normal
-0.2
558
Normal
-0.2
742
Normal
-0.2
278
Normal
-0.2
456
Normal
-0.2
723
Tumor
-0.2
284
Normal
-0.2
874
Normal
-0.2
142
Normal
-0.2
882
Normal
-0.2
926
Normal
-0.2
132
Normal
-0.2
952
Normal
-0.2
362
Normal
-0.2
636
Normal
-0.2
746
Normal
-0.2
224
Normal
-0.2
728
Normal
-0.2
958
Normal
-0.2
641
Tumor
-0.2
518
Normal
-0.2
714
Normal
-0.2
722
Normal
-0.2
786
Normal
-0.2
286
Normal
-0.2
468
Normal
-0.2
416
Normal
-0.2
964
Normal
-0.3
866
Normal
-0.3
968
Normal
-0.3
466
Normal
-0.3
745
Tumor
-0.3
756
Normal
-0.3
716
Normal
-0.3
232
Normal
-0.3
868
Normal
-0.3
627
Tumor
-0.3
642
Normal
-0.3
976
Normal
-0.3
452
Normal
-0.3
944
Normal
-0.3
1042
Normal
-0.3
448
Normal
-0.3
436
Normal
-0.3
1046
Normal
-0.3
618
Normal
-0.3
258
Normal
-0.3
514
Normal
-0.3
914
Normal
-0.3
862
Normal
-0.3
698
Normal
-0.4
1044
Normal
-0.4
884
Normal
-0.6
912
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
