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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PHC2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
146.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
128.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
115.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
114.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
113.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
107.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
104.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
102.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
98.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
97.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
91.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
91.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
90.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
89.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
87.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
85.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
83.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
82.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
82.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
80.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
79.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
79.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
78.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
76.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
74.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
71.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
71.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
71.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
70.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
69.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
68.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
68.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
68.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
68.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
66.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
66.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
65.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
65.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
63.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
63.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
63.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
63.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
62.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
61.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
60.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
60.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
59.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
59.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
59.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
59.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
59.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
59.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
58.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
58.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
58.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
58.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
57.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
56.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
56.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
56.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
55.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
55.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
54.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
54.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
54.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
54.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
54.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
53.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
53.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
52.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
52.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
52.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
51.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
51.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
51.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
51.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
50.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
50.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
50.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
50.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
49.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
49.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
49.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
49.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
48.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
48.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
48.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
48.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
47.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
47.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
47.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
47.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
46.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
46.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
46.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
46.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
46.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
46.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
46.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
46.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
45.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
45.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
45.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
45.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
44.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
44.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
44.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
43.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
43.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
43.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
43.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
43.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
42.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
42.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
41.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
41.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
40.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
40.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
40.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
40.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
39.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
39.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
38.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
38.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
38.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
38.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
38.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
38.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
38.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
38.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
37.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
37.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
37.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
37.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
36.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
36.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
36.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
36.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
36.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
35.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
35.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
35.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
35.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
34.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
34.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
34.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
34.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
34.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
34.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
34.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
34.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
34.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
34.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
34.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
33.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
33.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
33.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
33.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
33.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
33.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
33.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
32.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
32.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
32.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
32.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
32.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
32.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
32.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
32.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
32.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
32.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
31.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
31.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
31.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
31.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
31.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
30.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
30.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
30.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
30.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
30.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
30.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
30.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
30.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
30.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
29.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
29.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
29.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.5
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
29.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
29.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
29.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
29.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
28.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
28.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
28.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
28.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
28.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
28.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
28.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
27.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
27.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
27.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
27.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
27.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
27.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
27.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
26.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
26.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
26.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
26.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
26.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
26.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
26.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
26.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
25.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
25.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
25.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
25.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
25.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
25.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
25.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
25.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
24.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
24.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.7
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
24.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
24.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
24.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
24.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
24.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
24.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
23.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
23.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
23.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
23.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
23.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
23.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
23.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
23.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
23.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
23.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
23.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
23.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
22.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
22.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
22.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
22.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
22.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
22.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
21.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
21.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
21.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
21.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
21.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
20.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
20.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
20.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
20.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
20.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
20.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
19.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
19.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
19.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
19.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
19.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
19.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
18.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
18.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
18.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
18.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
18.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
17.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
17.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
17.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
17.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
16.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
16.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
16.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
16.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
16.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
15.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
14.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
12.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
12.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
12.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
12.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PHC2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
40.7
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
192.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
142.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
105.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
102.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
102.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
102.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
94.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
86.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
85.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
84.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
79.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
77.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
76.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
73.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
70.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
69.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
68.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
67.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
67.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
67.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
66.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
65.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
65.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
64.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
64.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
63.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
63.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
62.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
62.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
61.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
61.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
60.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
60.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
60.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
60.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
60.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
60.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
58.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
58.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
58.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
58.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
57.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
57.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
57.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
57.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
54.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
54.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
54.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
54.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
52.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
52.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
51.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
51.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
50.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
50.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
49.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
49.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
49.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
48.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
48.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
47.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
47.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
47.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
46.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
46.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
46.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
45.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
45.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
45.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
44.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
43.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
43.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
42.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
42.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
42.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
42.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
42.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
41.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
41.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
41.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
41.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
41.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
41.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
41.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
40.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
40.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
40.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
40.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
39.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
38.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
38.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
38.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
38.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
38.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
38.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
37.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
37.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
36.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
36.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
36.6
DO50798
0 years, male, NA, stage:3, dead, 30 days
36.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
36.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
35.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
35.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
35.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
35.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
34.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
34.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
34.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
34.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
33.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
33.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
33.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
33.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
33.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
33.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
33.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
33.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
33.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
33.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
33.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
32.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
32.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
32.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
32.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
32.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
32.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
31.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
31.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
31.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
31.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
31.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
30.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
30.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
30.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
30.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
30.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
30.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
30.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
30.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
29.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
29.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
29.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
29.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
28.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
28.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
28.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
28.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
28.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
28.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
28.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
27.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
27.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
27.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
27.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
27.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
27.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
26.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
26.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
26.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
25.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
25.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
25.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
25.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
24.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
24.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
24.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
23.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
23.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
23.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
22.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
22.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
22.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
22.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
21.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
21.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
20.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
20.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
19.7
DO48746
0 years, male, NA, stage:3, alive, 570 days
19.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
19.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
19.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
18.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
18.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
18.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
16.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
12.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
1.6
425
Tumor
1.2
647
Tumor
1.2
431
Tumor
1.2
635
Tumor
1.2
413
Tumor
1.1
497
Tumor
1.1
661
Tumor
1.0
487
Tumor
1.0
161
Tumor
1.0
737
Tumor
1.0
383
Tumor
1.0
865
Tumor
0.9
527
Tumor
0.8
957
Tumor
0.8
953
Tumor
0.8
663
Tumor
0.8
123
Tumor
0.8
743
Tumor
0.8
112
Tumor
0.8
341
Tumor
0.7
443
Tumor
0.7
695
Tumor
0.7
951
Tumor
0.7
231
Tumor
0.6
777
Tumor
0.6
1021
Tumor
0.6
351
Tumor
0.6
473
Tumor
0.6
923
Tumor
0.6
261
Tumor
0.6
313
Tumor
0.6
433
Tumor
0.6
187
Tumor
0.5
125
Tumor
0.5
387
Tumor
0.5
567
Tumor
0.5
883
Tumor
0.5
361
Tumor
0.5
967
Tumor
0.5
343
Tumor
0.5
223
Tumor
0.5
1025
Tumor
0.4
127
Tumor
0.4
483
Tumor
0.4
477
Tumor
0.4
545
Tumor
0.4
367
Tumor
0.4
814
Normal
0.4
285
Tumor
0.4
755
Tumor
0.4
911
Tumor
0.4
921
Tumor
0.4
1031
Tumor
0.4
331
Tumor
0.4
937
Tumor
0.4
1027
Tumor
0.4
513
Tumor
0.4
467
Tumor
0.4
131
Tumor
0.4
965
Tumor
0.4
685
Tumor
0.3
141
Tumor
0.3
515
Tumor
0.3
523
Tumor
0.3
171
Tumor
0.3
1045
Tumor
0.3
277
Tumor
0.3
481
Tumor
0.3
283
Tumor
0.3
463
Tumor
0.3
271
Tumor
0.3
741
Tumor
0.3
297
Tumor
0.3
357
Tumor
0.3
137
Tumor
0.3
533
Tumor
0.3
465
Tumor
0.3
221
Tumor
0.3
571
Tumor
0.3
355
Tumor
0.3
311
Tumor
0.2
785
Tumor
0.2
863
Tumor
0.2
977
Tumor
0.2
257
Tumor
0.2
445
Tumor
0.2
573
Tumor
0.2
535
Tumor
0.2
423
Tumor
0.2
913
Tumor
0.2
471
Tumor
0.2
943
Tumor
0.2
1013
Tumor
0.2
955
Tumor
0.2
615
Tumor
0.2
113
Tumor
0.1
375
Tumor
0.1
1043
Tumor
0.1
461
Tumor
0.1
671
Tumor
0.1
435
Tumor
0.1
815
Tumor
0.1
873
Tumor
0.1
393
Tumor
0.1
983
Tumor
0.1
877
Tumor
0.1
553
Tumor
0.1
455
Tumor
0.1
267
Tumor
0.1
327
Tumor
0.1
415
Tumor
0.1
617
Tumor
0.1
817
Tumor
0.1
328
Normal
0.0
627
Tumor
0.0
411
Tumor
0.0
385
Tumor
0.0
391
Tumor
0.0
963
Tumor
0.0
185
Tumor
0.0
213
Tumor
0.0
227
Tumor
0.0
925
Tumor
0.0
421
Tumor
0.0
1041
Tumor
0.0
823
Tumor
0.0
861
Tumor
0.0
563
Tumor
0.0
478
Normal
0.0
867
Tumor
0.0
451
Tumor
0.0
557
Tumor
0.0
217
Tumor
0.0
365
Tumor
0.0
944
Normal
0.0
368
Normal
0.0
727
Tumor
0.0
493
Tumor
-0.1
984
Normal
-0.1
721
Tumor
-0.1
818
Normal
-0.1
524
Normal
-0.1
744
Normal
-0.1
447
Tumor
-0.1
491
Tumor
-0.1
517
Tumor
-0.1
912
Normal
-0.1
975
Tumor
-0.1
363
Tumor
-0.1
881
Tumor
-0.1
536
Normal
-0.1
976
Normal
-0.1
964
Normal
-0.1
537
Tumor
-0.1
981
Tumor
-0.1
982
Normal
-0.1
135
Tumor
-0.1
427
Tumor
-0.1
534
Normal
-0.1
868
Normal
-0.1
384
Normal
-0.1
1015
Tumor
-0.1
364
Normal
-0.1
778
Normal
-0.2
528
Normal
-0.2
1016
Normal
-0.2
396
Normal
-0.2
392
Normal
-0.2
952
Normal
-0.2
538
Normal
-0.2
124
Normal
-0.2
1042
Normal
-0.2
498
Normal
-0.2
298
Normal
-0.2
664
Normal
-0.2
641
Tumor
-0.2
444
Normal
-0.2
422
Normal
-0.2
424
Normal
-0.2
968
Normal
-0.2
1014
Normal
-0.2
312
Normal
-0.2
958
Normal
-0.2
665
Tumor
-0.2
456
Normal
-0.2
1032
Normal
-0.2
142
Normal
-0.2
412
Normal
-0.2
746
Normal
-0.2
488
Normal
-0.2
386
Normal
-0.2
672
Normal
-0.2
938
Normal
-0.2
426
Normal
-0.2
884
Normal
-0.2
428
Normal
-0.2
956
Normal
-0.2
857
Tumor
-0.2
745
Tumor
-0.2
878
Normal
-0.2
756
Normal
-0.2
436
Normal
-0.2
1022
Normal
-0.2
394
Normal
-0.2
126
Normal
-0.2
864
Normal
-0.2
662
Normal
-0.2
388
Normal
-0.2
966
Normal
-0.2
353
Tumor
-0.2
546
Normal
-0.2
954
Normal
-0.2
851
Tumor
-0.2
395
Tumor
-0.2
352
Normal
-0.2
824
Normal
-0.2
696
Normal
-0.2
858
Normal
-0.3
195
Tumor
-0.3
852
Normal
-0.3
862
Normal
-0.3
484
Normal
-0.3
354
Normal
-0.3
716
Normal
-0.3
866
Normal
-0.3
648
Normal
-0.3
114
Normal
-0.3
554
Normal
-0.3
474
Normal
-0.3
636
Normal
-0.3
284
Normal
-0.3
145
Tumor
-0.3
472
Normal
-0.3
224
Normal
-0.3
882
Normal
-0.3
917
Tumor
-0.3
432
Normal
-0.3
715
Tumor
-0.3
1046
Normal
-0.3
686
Normal
-0.3
446
Normal
-0.3
416
Normal
-0.3
466
Normal
-0.3
742
Normal
-0.3
211
Tumor
-0.3
1028
Normal
-0.3
978
Normal
-0.3
915
Tumor
-0.3
525
Tumor
-0.3
376
Normal
-0.3
642
Normal
-0.3
616
Normal
-0.3
713
Tumor
-0.3
714
Normal
-0.3
728
Normal
-0.3
494
Normal
-0.3
1026
Normal
-0.3
192
Normal
-0.3
344
Normal
-0.3
132
Normal
-0.3
464
Normal
-0.3
492
Normal
-0.3
146
Normal
-0.3
723
Tumor
-0.3
666
Normal
-0.3
564
Normal
-0.3
482
Normal
-0.3
697
Tumor
-0.3
278
Normal
-0.3
628
Normal
-0.3
228
Normal
-0.3
924
Normal
-0.3
162
Normal
-0.3
722
Normal
-0.3
518
Normal
-0.4
414
Normal
-0.4
268
Normal
-0.4
148
Normal
-0.4
258
Normal
-0.4
366
Normal
-0.4
128
Normal
-0.4
136
Normal
-0.4
786
Normal
-0.4
468
Normal
-0.4
212
Normal
-0.4
1044
Normal
-0.4
138
Normal
-0.4
568
Normal
-0.4
434
Normal
-0.4
218
Normal
-0.4
452
Normal
-0.4
286
Normal
-0.4
698
Normal
-0.4
186
Normal
-0.4
914
Normal
-0.4
362
Normal
-0.4
111
Normal
-0.4
816
Normal
-0.4
272
Normal
-0.4
232
Normal
-0.4
926
Normal
-0.4
516
Normal
-0.4
574
Normal
-0.4
618
Normal
-0.4
918
Normal
-0.5
526
Normal
-0.5
172
Normal
-0.5
188
Normal
-0.5
916
Normal
-0.5
147
Tumor
-0.5
922
Normal
-0.5
262
Normal
-0.5
572
Normal
-0.5
738
Normal
-0.5
514
Normal
-0.5
558
Normal
-0.5
874
Normal
-0.5
356
Normal
-0.5
462
Normal
-0.5
222
Normal
-0.5
448
Normal
-0.5
342
Normal
-0.6
332
Normal
-0.6
214
Normal
-0.6
358
Normal
-0.6
196
Normal
-0.6
314
Normal
-0.7
724
Normal
-0.7
191
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
