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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YARS1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
27.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
126.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
117.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
113.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
100.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
98.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
93.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
85.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
84.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
80.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
80.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
71.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
71.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
71.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
68.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
68.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
66.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
66.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
66.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
64.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
62.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
62.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
61.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
60.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
60.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
57.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
56.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
55.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
54.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
54.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
53.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
52.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
51.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
51.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
50.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
49.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
49.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
48.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
48.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
48.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
48.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
47.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
47.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
46.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
45.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
45.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
45.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
45.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
44.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
44.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
44.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
44.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
43.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
43.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
42.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
42.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
42.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
42.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
42.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
41.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
41.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
40.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
40.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
40.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
40.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
39.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
39.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
38.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
38.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
38.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
38.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
37.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
37.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
37.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
37.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
36.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
36.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
36.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
36.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
36.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
36.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
36.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
35.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
35.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
35.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
34.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
33.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
33.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
33.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
33.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
33.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
33.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
32.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
32.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
32.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
32.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
32.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
31.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
31.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
31.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
31.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
30.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
30.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
30.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
30.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
29.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
29.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
29.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
29.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
29.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
29.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
29.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
29.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
29.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
28.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
28.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
28.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
28.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
28.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
28.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
28.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
28.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
28.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
27.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
27.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
27.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
27.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
27.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
27.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
27.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
26.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
26.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
25.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
25.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
25.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
25.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
25.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
25.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
25.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
25.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
25.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
25.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
24.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
24.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
24.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
24.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
24.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
24.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
24.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
23.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
23.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
23.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
22.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
22.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
22.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
22.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
22.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
22.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
22.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
22.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
22.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
22.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
21.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
21.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
21.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
21.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
20.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
20.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
20.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
20.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
20.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
20.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
20.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
20.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
20.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
20.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
19.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
18.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
18.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
18.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
18.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
18.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
18.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
18.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
18.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
18.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
17.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
17.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
16.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
16.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
16.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
16.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
16.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
16.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
16.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
16.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
15.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
14.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
14.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
14.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
14.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
13.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
13.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
13.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
12.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
12.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
12.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
12.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
11.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
10.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
8.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.8
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
