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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PUM1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
36.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
35.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
32.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
27.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
27.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
26.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
25.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
24.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
23.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
22.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
21.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
21.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
21.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
21.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
20.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
19.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
19.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
18.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
17.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
17.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
16.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
16.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
15.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
15.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
14.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
13.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
13.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
13.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
13.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
13.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
12.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
12.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
11.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
11.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
10.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
10.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
10.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
10.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
10.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
10.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
9.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
9.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
8.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
7.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
7.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
6.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
5.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
5.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
4.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PUM1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.1
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
48.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
26.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
25.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
24.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
22.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
22.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
21.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
21.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
21.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
20.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
19.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
19.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
18.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
18.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
17.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
17.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
17.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
16.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
16.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
16.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
15.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
15.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
15.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
15.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
15.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
15.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
14.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
14.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
14.7
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
14.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
14.3
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
14.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
14.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
13.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
13.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
13.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
13.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
13.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
13.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
13.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.7
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
12.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
12.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
11.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
11.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
11.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
11.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
10.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
10.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
10.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
9.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
9.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
9.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
8.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
7.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
965
Tumor
1.2
473
Tumor
1.1
171
Tumor
0.9
865
Tumor
0.8
743
Tumor
0.8
497
Tumor
0.7
533
Tumor
0.7
951
Tumor
0.7
663
Tumor
0.7
1021
Tumor
0.7
525
Tumor
0.6
727
Tumor
0.6
724
Normal
0.6
661
Tumor
0.6
351
Tumor
0.6
425
Tumor
0.6
131
Tumor
0.6
883
Tumor
0.6
231
Tumor
0.6
573
Tumor
0.6
1013
Tumor
0.6
537
Tumor
0.5
391
Tumor
0.5
977
Tumor
0.5
535
Tumor
0.5
817
Tumor
0.5
123
Tumor
0.5
427
Tumor
0.5
695
Tumor
0.5
367
Tumor
0.5
877
Tumor
0.5
283
Tumor
0.5
161
Tumor
0.5
355
Tumor
0.5
487
Tumor
0.4
395
Tumor
0.4
112
Tumor
0.4
925
Tumor
0.4
431
Tumor
0.4
813
Tumor
0.4
477
Tumor
0.4
413
Tumor
0.4
571
Tumor
0.4
685
Tumor
0.3
343
Tumor
0.3
527
Tumor
0.3
915
Tumor
0.3
923
Tumor
0.3
567
Tumor
0.3
1041
Tumor
0.3
517
Tumor
0.3
851
Tumor
0.3
665
Tumor
0.3
963
Tumor
0.3
545
Tumor
0.3
285
Tumor
0.3
493
Tumor
0.3
943
Tumor
0.3
967
Tumor
0.3
491
Tumor
0.3
737
Tumor
0.3
823
Tumor
0.3
671
Tumor
0.3
937
Tumor
0.3
1027
Tumor
0.3
983
Tumor
0.2
375
Tumor
0.2
713
Tumor
0.2
777
Tumor
0.2
385
Tumor
0.2
741
Tumor
0.2
814
Normal
0.2
953
Tumor
0.2
451
Tumor
0.2
211
Tumor
0.2
515
Tumor
0.2
861
Tumor
0.2
641
Tumor
0.2
557
Tumor
0.2
921
Tumor
0.2
715
Tumor
0.2
911
Tumor
0.2
313
Tumor
0.2
461
Tumor
0.2
341
Tumor
0.2
563
Tumor
0.2
331
Tumor
0.2
1015
Tumor
0.2
478
Normal
0.2
536
Normal
0.1
393
Tumor
0.1
213
Tumor
0.1
447
Tumor
0.1
113
Tumor
0.1
815
Tumor
0.1
721
Tumor
0.1
311
Tumor
0.1
938
Normal
0.1
553
Tumor
0.1
881
Tumor
0.1
1031
Tumor
0.1
481
Tumor
0.1
135
Tumor
0.1
125
Tumor
0.1
483
Tumor
0.1
297
Tumor
0.1
958
Normal
0.1
697
Tumor
0.1
912
Normal
0.1
267
Tumor
0.1
884
Normal
0.1
445
Tumor
0.1
443
Tumor
0.1
363
Tumor
0.1
1026
Normal
0.1
957
Tumor
0.1
415
Tumor
0.1
913
Tumor
0.1
635
Tumor
0.1
411
Tumor
0.1
523
Tumor
0.1
1032
Normal
0.1
554
Normal
0.1
538
Normal
0.1
922
Normal
0.1
917
Tumor
0.1
978
Normal
0.1
383
Tumor
0.1
975
Tumor
0.1
127
Tumor
0.1
463
Tumor
0.1
982
Normal
0.1
433
Tumor
0.1
873
Tumor
0.1
857
Tumor
0.1
261
Tumor
0.1
546
Normal
0.1
984
Normal
0.1
185
Tumor
0.1
966
Normal
0.1
435
Tumor
0.1
498
Normal
0.1
217
Tumor
0.1
471
Tumor
0.1
863
Tumor
0.0
755
Tumor
0.0
617
Tumor
0.0
492
Normal
0.0
524
Normal
0.0
145
Tumor
0.0
916
Normal
0.0
1042
Normal
0.0
513
Tumor
0.0
918
Normal
0.0
926
Normal
0.0
277
Tumor
0.0
981
Tumor
0.0
221
Tumor
0.0
455
Tumor
0.0
357
Tumor
0.0
964
Normal
0.0
1045
Tumor
0.0
954
Normal
0.0
284
Normal
0.0
647
Tumor
0.0
867
Tumor
0.0
327
Tumor
0.0
1022
Normal
0.0
223
Tumor
0.0
257
Tumor
0.0
1025
Tumor
0.0
465
Tumor
0.0
187
Tumor
0.0
528
Normal
0.0
714
Normal
0.0
785
Tumor
0.0
488
Normal
0.0
534
Normal
0.0
227
Tumor
0.0
976
Normal
0.0
1016
Normal
0.0
878
Normal
0.0
412
Normal
0.0
924
Normal
0.0
482
Normal
0.0
944
Normal
0.0
952
Normal
0.0
1028
Normal
-0.1
212
Normal
-0.1
636
Normal
-0.1
387
Tumor
-0.1
968
Normal
-0.1
484
Normal
-0.1
474
Normal
-0.1
1014
Normal
-0.1
444
Normal
-0.1
955
Tumor
-0.1
361
Tumor
-0.1
572
Normal
-0.1
421
Tumor
-0.1
224
Normal
-0.1
756
Normal
-0.1
558
Normal
-0.1
516
Normal
-0.1
472
Normal
-0.1
746
Normal
-0.1
786
Normal
-0.1
882
Normal
-0.1
494
Normal
-0.1
615
Tumor
-0.1
365
Tumor
-0.1
137
Tumor
-0.1
696
Normal
-0.1
716
Normal
-0.1
328
Normal
-0.1
686
Normal
-0.1
518
Normal
-0.1
738
Normal
-0.1
364
Normal
-0.1
742
Normal
-0.1
616
Normal
-0.1
956
Normal
-0.1
862
Normal
-0.1
191
Tumor
-0.1
526
Normal
-0.1
384
Normal
-0.1
514
Normal
-0.1
778
Normal
-0.1
723
Tumor
-0.1
356
Normal
-0.1
128
Normal
-0.1
124
Normal
-0.1
852
Normal
-0.1
141
Tumor
-0.1
618
Normal
-0.1
353
Tumor
-0.1
434
Normal
-0.1
386
Normal
-0.2
218
Normal
-0.2
368
Normal
-0.2
568
Normal
-0.2
126
Normal
-0.2
192
Normal
-0.2
816
Normal
-0.2
228
Normal
-0.2
698
Normal
-0.2
271
Tumor
-0.2
222
Normal
-0.2
448
Normal
-0.2
462
Normal
-0.2
396
Normal
-0.2
574
Normal
-0.2
195
Tumor
-0.2
423
Tumor
-0.2
627
Tumor
-0.2
628
Normal
-0.2
446
Normal
-0.2
728
Normal
-0.2
1044
Normal
-0.2
467
Tumor
-0.2
392
Normal
-0.2
1043
Tumor
-0.2
745
Tumor
-0.2
824
Normal
-0.2
564
Normal
-0.2
864
Normal
-0.2
268
Normal
-0.2
866
Normal
-0.2
818
Normal
-0.2
858
Normal
-0.2
672
Normal
-0.2
114
Normal
-0.2
648
Normal
-0.2
286
Normal
-0.2
914
Normal
-0.2
1046
Normal
-0.2
642
Normal
-0.2
416
Normal
-0.2
664
Normal
-0.2
214
Normal
-0.2
362
Normal
-0.2
111
Normal
-0.2
147
Tumor
-0.2
232
Normal
-0.2
388
Normal
-0.2
744
Normal
-0.2
666
Normal
-0.3
722
Normal
-0.3
414
Normal
-0.3
874
Normal
-0.3
376
Normal
-0.3
662
Normal
-0.3
148
Normal
-0.3
366
Normal
-0.3
188
Normal
-0.3
436
Normal
-0.3
868
Normal
-0.3
344
Normal
-0.3
424
Normal
-0.3
464
Normal
-0.3
312
Normal
-0.3
432
Normal
-0.3
142
Normal
-0.3
272
Normal
-0.3
196
Normal
-0.3
428
Normal
-0.3
352
Normal
-0.3
186
Normal
-0.3
262
Normal
-0.3
426
Normal
-0.3
298
Normal
-0.3
146
Normal
-0.3
394
Normal
-0.3
258
Normal
-0.4
138
Normal
-0.4
422
Normal
-0.4
314
Normal
-0.4
162
Normal
-0.4
132
Normal
-0.4
354
Normal
-0.4
278
Normal
-0.4
466
Normal
-0.4
136
Normal
-0.4
452
Normal
-0.4
172
Normal
-0.4
332
Normal
-0.4
456
Normal
-0.4
468
Normal
-0.4
358
Normal
-0.5
342
Normal
-0.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
