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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBH1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
62.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
40.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
38.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
37.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
34.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
34.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
31.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
29.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
29.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
29.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
28.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
26.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
26.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
26.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
25.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
24.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
24.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
21.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
21.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
20.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
20.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
20.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.8
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
18.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
17.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
17.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
17.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
17.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
16.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
16.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
16.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
16.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
16.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
16.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
15.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
15.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
14.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
14.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
14.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
14.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
13.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
13.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
13.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
13.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
13.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
12.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
12.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
12.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
12.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
12.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
12.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
12.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
12.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
12.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
12.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
11.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
11.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
11.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
10.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
9.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
8.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
8.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
8.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
8.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
8.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
7.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
7.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
7.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
6.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
6.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
6.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
6.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
6.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
5.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
2.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
944
Normal
1.0
1013
Tumor
0.9
852
Normal
0.9
366
Normal
0.8
553
Tumor
0.8
365
Tumor
0.7
147
Tumor
0.7
955
Tumor
0.7
368
Normal
0.7
981
Tumor
0.7
956
Normal
0.6
384
Normal
0.6
376
Normal
0.6
362
Normal
0.6
983
Tumor
0.6
444
Normal
0.6
383
Tumor
0.5
823
Tumor
0.5
816
Normal
0.5
188
Normal
0.5
313
Tumor
0.5
978
Normal
0.5
685
Tumor
0.5
268
Normal
0.5
938
Normal
0.5
1031
Tumor
0.5
663
Tumor
0.4
258
Normal
0.4
1042
Normal
0.4
1025
Tumor
0.4
954
Normal
0.4
917
Tumor
0.4
447
Tumor
0.4
924
Normal
0.4
721
Tumor
0.4
545
Tumor
0.4
1016
Normal
0.4
283
Tumor
0.4
434
Normal
0.4
331
Tumor
0.4
1014
Normal
0.4
211
Tumor
0.4
984
Normal
0.4
916
Normal
0.4
863
Tumor
0.4
923
Tumor
0.4
818
Normal
0.4
272
Normal
0.4
126
Normal
0.4
161
Tumor
0.4
921
Tumor
0.4
1032
Normal
0.4
192
Normal
0.3
864
Normal
0.3
858
Normal
0.3
976
Normal
0.3
724
Normal
0.3
1043
Tumor
0.3
866
Normal
0.3
341
Tumor
0.3
874
Normal
0.3
722
Normal
0.3
311
Tumor
0.3
716
Normal
0.3
857
Tumor
0.3
446
Normal
0.3
926
Normal
0.3
918
Normal
0.3
696
Normal
0.3
367
Tumor
0.3
478
Normal
0.3
172
Normal
0.3
361
Tumor
0.3
873
Tumor
0.3
422
Normal
0.3
262
Normal
0.3
695
Tumor
0.3
113
Tumor
0.3
212
Normal
0.2
421
Tumor
0.2
535
Tumor
0.2
686
Normal
0.2
868
Normal
0.2
958
Normal
0.2
925
Tumor
0.2
672
Normal
0.2
743
Tumor
0.2
713
Tumor
0.2
554
Normal
0.2
352
Normal
0.2
285
Tumor
0.2
112
Tumor
0.2
473
Tumor
0.2
966
Normal
0.2
714
Normal
0.2
218
Normal
0.2
538
Normal
0.2
738
Normal
0.2
284
Normal
0.2
432
Normal
0.2
1027
Tumor
0.2
922
Normal
0.2
185
Tumor
0.2
1015
Tumor
0.2
124
Normal
0.2
354
Normal
0.2
357
Tumor
0.2
227
Tumor
0.2
912
Normal
0.2
817
Tumor
0.2
977
Tumor
0.2
413
Tumor
0.2
1026
Normal
0.2
967
Tumor
0.2
952
Normal
0.2
964
Normal
0.2
223
Tumor
0.2
1022
Normal
0.2
187
Tumor
0.2
881
Tumor
0.2
744
Normal
0.2
353
Tumor
0.1
968
Normal
0.1
111
Normal
0.1
813
Tumor
0.1
715
Tumor
0.1
1028
Normal
0.1
982
Normal
0.1
882
Normal
0.1
232
Normal
0.1
127
Tumor
0.1
148
Normal
0.1
664
Normal
0.1
537
Tumor
0.1
878
Normal
0.1
162
Normal
0.1
314
Normal
0.1
425
Tumor
0.1
666
Normal
0.1
862
Normal
0.1
388
Normal
0.1
214
Normal
0.1
536
Normal
0.1
392
Normal
0.1
914
Normal
0.1
386
Normal
0.1
278
Normal
0.1
375
Tumor
0.1
394
Normal
0.1
963
Tumor
0.1
786
Normal
0.1
298
Normal
0.1
728
Normal
0.1
297
Tumor
0.1
746
Normal
0.1
756
Normal
0.1
468
Normal
0.1
114
Normal
0.1
1046
Normal
0.1
662
Normal
0.1
477
Tumor
0.1
517
Tumor
0.1
877
Tumor
0.1
344
Normal
0.1
742
Normal
0.0
1044
Normal
0.0
385
Tumor
0.0
648
Normal
0.0
412
Normal
0.0
343
Tumor
0.0
571
Tumor
0.0
222
Normal
0.0
196
Normal
0.0
482
Normal
0.0
564
Normal
0.0
814
Normal
0.0
224
Normal
0.0
884
Normal
0.0
452
Normal
0.0
393
Tumor
0.0
572
Normal
0.0
574
Normal
0.0
466
Normal
0.0
431
Tumor
0.0
396
Normal
0.0
436
Normal
0.0
257
Tumor
0.0
883
Tumor
0.0
128
Normal
0.0
416
Normal
0.0
186
Normal
0.0
433
Tumor
0.0
261
Tumor
0.0
356
Normal
0.0
332
Normal
0.0
228
Normal
0.0
915
Tumor
0.0
415
Tumor
0.0
426
Normal
0.0
867
Tumor
0.0
312
Normal
0.0
328
Normal
0.0
231
Tumor
-0.1
515
Tumor
-0.1
527
Tumor
-0.1
727
Tumor
-0.1
471
Tumor
-0.1
423
Tumor
-0.1
327
Tumor
-0.1
824
Normal
-0.1
217
Tumor
-0.1
516
Normal
-0.1
778
Normal
-0.1
125
Tumor
-0.1
213
Tumor
-0.1
546
Normal
-0.1
568
Normal
-0.1
424
Normal
-0.1
286
Normal
-0.1
558
Normal
-0.1
267
Tumor
-0.1
364
Normal
-0.1
737
Tumor
-0.1
698
Normal
-0.1
277
Tumor
-0.1
975
Tumor
-0.1
518
Normal
-0.1
427
Tumor
-0.1
865
Tumor
-0.1
526
Normal
-0.1
723
Tumor
-0.1
463
Tumor
-0.1
351
Tumor
-0.1
387
Tumor
-0.1
474
Normal
-0.1
428
Normal
-0.1
195
Tumor
-0.1
741
Tumor
-0.1
533
Tumor
-0.1
435
Tumor
-0.1
913
Tumor
-0.1
514
Normal
-0.1
443
Tumor
-0.1
524
Normal
-0.1
464
Normal
-0.1
342
Normal
-0.1
271
Tumor
-0.1
815
Tumor
-0.1
123
Tumor
-0.1
472
Normal
-0.1
1041
Tumor
-0.1
557
Tumor
-0.2
528
Normal
-0.2
462
Normal
-0.2
465
Tumor
-0.2
661
Tumor
-0.2
358
Normal
-0.2
461
Tumor
-0.2
534
Normal
-0.2
395
Tumor
-0.2
937
Tumor
-0.2
414
Normal
-0.2
391
Tumor
-0.2
563
Tumor
-0.2
355
Tumor
-0.2
513
Tumor
-0.2
567
Tumor
-0.2
647
Tumor
-0.3
1021
Tumor
-0.3
957
Tumor
-0.3
191
Tumor
-0.3
861
Tumor
-0.3
221
Tumor
-0.3
573
Tumor
-0.3
671
Tumor
-0.3
363
Tumor
-0.3
1045
Tumor
-0.4
455
Tumor
-0.4
911
Tumor
-0.4
953
Tumor
-0.4
451
Tumor
-0.4
697
Tumor
-0.4
785
Tumor
-0.4
755
Tumor
-0.4
456
Normal
-0.4
745
Tumor
-0.4
943
Tumor
-0.4
523
Tumor
-0.4
448
Normal
-0.4
965
Tumor
-0.4
665
Tumor
-0.4
777
Tumor
-0.4
171
Tumor
-0.4
525
Tumor
-0.5
951
Tumor
-0.5
481
Tumor
-0.5
411
Tumor
-0.5
467
Tumor
-0.6
851
Tumor
-0.7
445
Tumor
-0.9
483
Tumor
N/A
484
Normal
N/A
487
Tumor
N/A
488
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
615
Tumor
N/A
616
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
