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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMM17A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
48.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
188.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
174.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
168.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
163.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
135.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
133.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
132.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
128.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
125.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
120.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
118.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
116.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
110.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
109.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
109.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
109.2
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
105.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
103.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
103.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
100.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
98.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
97.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
96.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
93.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
92.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
92.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
91.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
91.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
90.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
89.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
89.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
89.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
88.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
88.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
85.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
83.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
82.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
82.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
81.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
79.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
79.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
79.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
79.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
78.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
77.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
77.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
77.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
76.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
76.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
75.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
73.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
72.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
72.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
71.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
71.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
71.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
70.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
70.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
70.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
69.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
68.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
68.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
66.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
66.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
66.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
66.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
65.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
65.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
65.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
65.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
65.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
64.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
63.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
63.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
63.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
62.7
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
62.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
62.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
61.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
61.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
61.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
59.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
59.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
59.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
58.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
58.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
58.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
58.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
57.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
57.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
57.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
57.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
57.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
57.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
56.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
56.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
56.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
56.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
56.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
55.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
55.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
55.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
55.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
55.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
54.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
54.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
54.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
54.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
54.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
54.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
54.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
53.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
53.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
53.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
53.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
52.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
52.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
52.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
51.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
51.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
51.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
51.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
51.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
51.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
51.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
50.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
50.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
50.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
49.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
49.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
49.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
49.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
49.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
49.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
49.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
49.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
48.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
48.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
48.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
48.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
48.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
48.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
48.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
47.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
47.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
47.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
47.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
47.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
47.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
47.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
46.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
46.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
46.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
46.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
46.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
46.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
45.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
44.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
44.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
44.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
44.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
44.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
43.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
43.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
43.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
43.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
42.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
42.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
42.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
42.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
42.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
42.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
41.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
41.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
41.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
41.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
40.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
40.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
40.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
39.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
39.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
39.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
39.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
39.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
39.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
39.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
39.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
39.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
39.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
39.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
38.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
38.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
38.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
38.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
38.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
37.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
37.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
37.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
37.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
37.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
37.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
37.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
37.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
37.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
36.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
36.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
36.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
35.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
35.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
35.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
35.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
35.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
35.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
35.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
35.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
35.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
35.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
34.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
34.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
34.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
34.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
34.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
34.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
34.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
33.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
33.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
33.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
33.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
33.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
33.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
33.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
32.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
32.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
32.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
32.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
32.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
32.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
32.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
32.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
31.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
31.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
31.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
31.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
31.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
31.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
31.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
31.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
30.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
30.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
30.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
30.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
30.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
30.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
29.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
29.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
29.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
29.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
29.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
29.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
29.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
29.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
28.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
28.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
28.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
28.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
27.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
27.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
27.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
27.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
27.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
26.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
26.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
26.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
26.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
26.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
26.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
25.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
25.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
25.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
25.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
25.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
25.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
24.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
24.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
24.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
24.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
24.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
24.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
24.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
24.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
24.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
24.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
23.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
23.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
23.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
22.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
22.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
22.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
22.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
22.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
22.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
22.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
21.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
21.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
19.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
19.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
19.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
18.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
18.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
18.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
16.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
16.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
15.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
13.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TIMM17A is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
55.7
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
209.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
172.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
164.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
155.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
152.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
142.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
140.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
136.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
128.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
126.2
DO50825
0 years, male, NA, stage:2, alive, 390 days
125.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
119.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
118.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
117.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
107.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
106.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
103.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
101.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
99.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
98.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
96.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
96.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
95.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
94.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
94.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
91.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
89.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
88.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
84.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
84.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
84.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
82.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
82.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
81.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
80.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
80.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
79.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
78.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
77.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
77.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
77.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
76.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
76.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
76.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
75.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
71.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
71.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
70.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
70.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
70.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
69.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
69.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
68.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
68.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
68.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
68.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
67.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
67.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
67.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
67.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
67.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
66.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
65.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
65.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
64.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
63.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
63.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
62.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
62.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
61.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
61.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
60.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
59.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
59.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
58.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
58.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
57.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
57.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
57.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
57.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
56.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
56.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
56.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
55.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
55.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
54.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
54.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
54.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
54.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
53.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
53.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
52.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
52.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
52.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
52.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
52.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
51.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
51.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
51.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
51.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
50.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
50.5
DO45297
0 years, female, NA, stage:4, dead, 1260 days
50.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
49.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
48.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
48.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
48.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
48.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
47.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
47.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
47.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
47.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
47.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
47.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
47.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
46.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
46.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
45.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
45.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
45.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
45.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
45.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
45.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
45.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
44.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
44.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
44.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
43.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
43.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
43.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
43.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
42.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
42.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
42.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
42.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
42.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
42.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
42.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
42.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
42.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
42.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
42.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
41.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
41.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
41.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
40.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
40.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
40.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
40.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
40.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
39.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
39.4
DO48697
0 years, female, NA, stage:2, dead, 810 days
39.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
39.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
39.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
38.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
38.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
38.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
38.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
38.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
38.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
38.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
37.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
37.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
37.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
36.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
35.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
35.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
34.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
34.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
34.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
34.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
33.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
33.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
33.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
33.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
33.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
33.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
33.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
32.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
32.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
32.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
31.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
31.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
31.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
30.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
30.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
29.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
29.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
29.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
28.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
28.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
27.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
26.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
26.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
26.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
26.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
24.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
24.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
23.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
22.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
22.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
21.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
20.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
19.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
18.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
745
Tumor
1.3
227
Tumor
1.2
257
Tumor
1.0
443
Tumor
0.9
451
Tumor
0.8
393
Tumor
0.8
421
Tumor
0.8
567
Tumor
0.8
571
Tumor
0.7
1027
Tumor
0.7
353
Tumor
0.7
957
Tumor
0.7
231
Tumor
0.7
191
Tumor
0.6
127
Tumor
0.6
461
Tumor
0.6
123
Tumor
0.6
145
Tumor
0.5
357
Tumor
0.5
361
Tumor
0.5
422
Normal
0.5
564
Normal
0.5
427
Tumor
0.5
452
Normal
0.5
911
Tumor
0.5
428
Normal
0.4
915
Tumor
0.4
477
Tumor
0.4
213
Tumor
0.4
538
Normal
0.4
867
Tumor
0.4
391
Tumor
0.4
137
Tumor
0.4
187
Tumor
0.4
727
Tumor
0.4
722
Normal
0.4
112
Tumor
0.4
147
Tumor
0.4
387
Tumor
0.4
743
Tumor
0.4
172
Normal
0.4
955
Tumor
0.3
148
Normal
0.3
436
Normal
0.3
358
Normal
0.3
468
Normal
0.3
267
Tumor
0.3
723
Tumor
0.3
414
Normal
0.3
262
Normal
0.3
465
Tumor
0.3
665
Tumor
0.3
395
Tumor
0.3
573
Tumor
0.3
222
Normal
0.3
554
Normal
0.3
568
Normal
0.3
188
Normal
0.3
714
Normal
0.3
537
Tumor
0.3
258
Normal
0.2
125
Tumor
0.2
186
Normal
0.2
388
Normal
0.2
557
Tumor
0.2
777
Tumor
0.2
525
Tumor
0.2
341
Tumor
0.2
162
Normal
0.2
433
Tumor
0.2
574
Normal
0.2
953
Tumor
0.2
136
Normal
0.2
1025
Tumor
0.2
272
Normal
0.2
642
Normal
0.2
956
Normal
0.2
515
Tumor
0.2
545
Tumor
0.2
755
Tumor
0.2
424
Normal
0.2
456
Normal
0.2
742
Normal
0.2
713
Tumor
0.2
466
Normal
0.1
1016
Normal
0.1
435
Tumor
0.1
464
Normal
0.1
517
Tumor
0.1
278
Normal
0.1
141
Tumor
0.1
354
Normal
0.1
132
Normal
0.1
195
Tumor
0.1
138
Normal
0.1
431
Tumor
0.1
425
Tumor
0.1
343
Tumor
0.1
744
Normal
0.1
914
Normal
0.1
716
Normal
0.1
411
Tumor
0.1
426
Normal
0.1
861
Tumor
0.1
873
Tumor
0.1
661
Tumor
0.1
448
Normal
0.1
394
Normal
0.1
365
Tumor
0.1
268
Normal
0.1
392
Normal
0.1
696
Normal
0.1
923
Tumor
0.1
327
Tumor
0.1
423
Tumor
0.1
196
Normal
0.1
977
Tumor
0.1
572
Normal
0.1
851
Tumor
0.1
313
Tumor
0.1
883
Tumor
0.1
128
Normal
0.0
367
Tumor
0.0
171
Tumor
0.0
232
Normal
0.0
135
Tumor
0.0
126
Normal
0.0
214
Normal
0.0
352
Normal
0.0
261
Tumor
0.0
721
Tumor
0.0
286
Normal
0.0
697
Tumor
0.0
221
Tumor
0.0
618
Normal
0.0
446
Normal
0.0
514
Normal
0.0
342
Normal
0.0
636
Normal
0.0
481
Tumor
0.0
528
Normal
0.0
737
Tumor
0.0
396
Normal
0.0
724
Normal
0.0
362
Normal
0.0
874
Normal
0.0
1045
Tumor
0.0
981
Tumor
0.0
434
Normal
0.0
386
Normal
0.0
416
Normal
0.0
344
Normal
0.0
513
Tumor
-0.1
185
Tumor
-0.1
967
Tumor
-0.1
627
Tumor
-0.1
978
Normal
-0.1
647
Tumor
-0.1
277
Tumor
-0.1
455
Tumor
-0.1
558
Normal
-0.1
666
Normal
-0.1
314
Normal
-0.1
113
Tumor
-0.1
671
Tumor
-0.1
366
Normal
-0.1
297
Tumor
-0.1
982
Normal
-0.1
413
Tumor
-0.1
648
Normal
-0.1
1043
Tumor
-0.1
866
Normal
-0.1
356
Normal
-0.1
376
Normal
-0.1
686
Normal
-0.1
474
Normal
-0.1
546
Normal
-0.1
527
Tumor
-0.1
1046
Normal
-0.2
984
Normal
-0.2
385
Tumor
-0.2
223
Tumor
-0.2
161
Tumor
-0.2
918
Normal
-0.2
445
Tumor
-0.2
563
Tumor
-0.2
1041
Tumor
-0.2
1014
Normal
-0.2
114
Normal
-0.2
728
Normal
-0.2
218
Normal
-0.2
615
Tumor
-0.2
534
Normal
-0.2
944
Normal
-0.2
526
Normal
-0.2
536
Normal
-0.2
432
Normal
-0.2
672
Normal
-0.2
146
Normal
-0.2
864
Normal
-0.2
698
Normal
-0.2
664
Normal
-0.2
963
Tumor
-0.2
1015
Tumor
-0.2
217
Tumor
-0.2
351
Tumor
-0.2
271
Tumor
-0.2
111
Normal
-0.2
881
Tumor
-0.2
635
Tumor
-0.2
882
Normal
-0.2
462
Normal
-0.2
913
Tumor
-0.3
142
Normal
-0.3
471
Tumor
-0.3
663
Tumor
-0.3
192
Normal
-0.3
868
Normal
-0.3
715
Tumor
-0.3
368
Normal
-0.3
328
Normal
-0.3
444
Normal
-0.3
662
Normal
-0.3
858
Normal
-0.3
951
Tumor
-0.3
965
Tumor
-0.3
472
Normal
-0.3
518
Normal
-0.3
952
Normal
-0.3
786
Normal
-0.3
124
Normal
-0.3
628
Normal
-0.3
482
Normal
-0.3
746
Normal
-0.3
857
Tumor
-0.3
412
Normal
-0.3
937
Tumor
-0.3
467
Tumor
-0.3
863
Tumor
-0.3
741
Tumor
-0.3
332
Normal
-0.3
823
Tumor
-0.3
921
Tumor
-0.3
447
Tumor
-0.3
553
Tumor
-0.3
616
Normal
-0.3
738
Normal
-0.4
824
Normal
-0.4
925
Tumor
-0.4
816
Normal
-0.4
284
Normal
-0.4
964
Normal
-0.4
375
Tumor
-0.4
983
Tumor
-0.4
884
Normal
-0.4
865
Tumor
-0.4
298
Normal
-0.4
1044
Normal
-0.4
852
Normal
-0.4
878
Normal
-0.4
533
Tumor
-0.4
862
Normal
-0.4
916
Normal
-0.5
975
Tumor
-0.5
384
Normal
-0.5
523
Tumor
-0.5
817
Tumor
-0.5
383
Tumor
-0.5
1022
Normal
-0.5
463
Tumor
-0.5
1021
Tumor
-0.5
922
Normal
-0.5
976
Normal
-0.5
478
Normal
-0.5
212
Normal
-0.5
473
Tumor
-0.5
818
Normal
-0.6
924
Normal
-0.6
695
Tumor
-0.6
415
Tumor
-0.6
685
Tumor
-0.6
926
Normal
-0.6
943
Tumor
-0.6
1028
Normal
-0.6
815
Tumor
-0.6
312
Normal
-0.6
228
Normal
-0.6
1026
Normal
-0.6
516
Normal
-0.6
968
Normal
-0.6
331
Tumor
-0.6
535
Tumor
-0.6
285
Tumor
-0.6
912
Normal
-0.6
641
Tumor
-0.7
938
Normal
-0.7
355
Tumor
-0.7
363
Tumor
-0.7
814
Normal
-0.7
364
Normal
-0.7
877
Tumor
-0.7
497
Tumor
-0.7
311
Tumor
-0.7
224
Normal
-0.7
491
Tumor
-0.8
1032
Normal
-0.8
778
Normal
-0.8
524
Normal
-0.8
283
Tumor
-0.8
1042
Normal
-0.9
131
Tumor
-0.9
1031
Tumor
-0.9
617
Tumor
-0.9
966
Normal
-0.9
756
Normal
-0.9
813
Tumor
-0.9
954
Normal
-0.9
493
Tumor
-1.0
958
Normal
-1.0
488
Normal
-1.0
917
Tumor
-1.0
494
Normal
-1.1
1013
Tumor
-1.1
211
Tumor
-1.2
484
Normal
-1.2
785
Tumor
-1.3
483
Tumor
-1.3
492
Normal
-1.5
498
Normal
-1.6
487
Tumor
-2.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
