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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FST is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
83.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1034.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
643.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
601.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
596.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
557.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
519.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
456.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
455.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
418.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
390.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
382.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
366.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
333.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
314.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
313.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
307.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
299.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
289.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
285.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
281.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
279.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
263.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
251.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
247.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
229.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
221.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
213.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
208.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
208.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
207.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
206.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
202.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
202.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
200.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
192.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
185.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
181.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
174.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
169.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
167.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
166.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
161.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
160.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
158.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
157.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
155.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
154.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
150.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
148.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
147.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
146.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
143.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
143.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
143.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
143.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
141.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
139.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
135.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
133.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
127.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
125.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
125.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
124.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
123.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
122.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
122.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
122.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
120.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
119.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
118.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
118.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
117.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
117.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
116.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
115.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
114.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
114.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
112.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
112.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
111.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
107.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
107.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
106.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
106.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
106.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
104.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
104.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
104.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
102.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
101.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
101.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
100.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
99.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
99.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
98.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
97.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
96.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
96.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
95.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
95.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
95.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
94.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
90.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
89.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
88.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
87.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
87.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
86.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
86.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
86.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
84.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
84.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
84.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
83.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
83.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
82.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
82.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
82.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
81.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
80.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
80.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
79.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
78.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
77.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
77.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
77.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
76.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
75.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
75.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
73.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
72.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
71.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
71.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
71.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
71.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
71.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
70.1
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
69.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
67.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
67.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
67.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
67.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
66.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
66.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
65.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
65.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
65.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
64.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
64.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
63.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
62.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
62.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
62.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
62.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
61.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
61.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
60.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
60.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
60.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
59.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
59.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
59.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
58.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
57.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
57.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
57.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
56.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
56.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
55.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
55.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
54.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
54.7
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
54.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
54.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
54.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
53.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
52.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
51.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
51.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
51.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
51.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
51.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
51.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
50.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
50.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
49.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
49.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
48.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
47.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
47.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
47.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
47.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
47.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
45.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
45.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
45.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
44.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
43.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
43.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
42.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
42.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
42.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
42.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
42.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
42.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
41.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
41.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
41.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
40.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
39.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
39.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
39.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
38.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
37.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
37.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
36.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
36.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
36.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
35.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
35.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
35.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
34.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
33.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
33.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
32.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
31.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
31.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
31.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
31.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
31.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
31.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
30.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
30.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
29.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
29.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
29.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
28.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
27.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
27.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
27.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
26.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
26.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
26.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
26.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
25.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
25.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
25.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
25.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
24.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
24.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
22.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
21.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
21.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
20.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
20.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
19.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
19.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
18.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
18.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
18.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
17.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
17.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
17.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
16.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
16.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
16.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
15.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
15.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
15.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
15.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
14.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
13.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
11.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
9.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
9.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
8.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
8.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
8.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
7.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
7.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
7.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
6.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
6.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
6.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
3.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
3.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
2.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
2.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
1.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FST is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
49.5
Number of samples
231
Samples
Sample
Description
TPM
DO48682
0 years, female, NA, stage:3, dead, 120 days
713.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
258.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
218.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
216.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
210.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
196.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
192.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
167.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
163.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
159.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
158.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
158.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
147.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
138.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
135.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
129.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
120.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
119.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
114.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
109.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
107.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
105.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
101.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
98.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
97.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
97.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
95.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
92.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
91.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
91.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
90.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
88.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
86.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
86.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
86.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
84.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
83.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
81.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
80.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
80.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
80.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
79.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
79.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
78.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
77.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
74.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
74.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
74.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
73.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
72.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
71.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
71.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
71.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
70.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
70.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
69.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
69.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
68.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
67.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
66.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
65.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
62.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
62.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
62.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
61.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
60.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
59.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
59.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
59.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
58.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
58.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
58.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
56.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
55.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
55.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
55.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
55.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
54.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
52.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
52.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
52.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
51.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
51.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
50.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
49.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
47.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
47.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
46.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
45.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
45.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
45.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
45.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
44.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
44.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
43.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
43.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
43.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
43.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
42.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
41.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
40.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
40.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
39.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
38.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
38.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
38.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
36.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
35.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
35.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
34.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
34.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
34.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
33.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
32.7
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
32.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
32.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
30.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
30.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
30.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
29.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
29.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
28.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
28.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
28.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
28.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
27.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
27.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
27.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
26.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
26.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
26.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
26.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
24.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
24.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
24.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
23.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
23.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
22.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
22.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
21.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
20.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
18.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
17.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
17.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
13.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
13.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
11.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
8.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.5
DO45251
0 years, female, NA, stage:2, alive, 900 days
7.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
6.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
5.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
4.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
3.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
2.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
2.4
DO45305
0 years, male, NA, stage:4, alive, 300 days
2.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
1.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
425
Tumor
2.9
367
Tumor
2.4
567
Tumor
2.4
523
Tumor
2.3
343
Tumor
2.2
471
Tumor
2.0
363
Tumor
1.9
573
Tumor
1.8
525
Tumor
1.8
823
Tumor
1.7
227
Tumor
1.7
537
Tumor
1.7
883
Tumor
1.6
635
Tumor
1.5
135
Tumor
1.5
473
Tumor
1.4
697
Tumor
1.3
755
Tumor
1.3
685
Tumor
1.3
661
Tumor
1.2
443
Tumor
1.2
545
Tumor
1.2
983
Tumor
1.2
137
Tumor
1.2
923
Tumor
1.1
431
Tumor
1.1
477
Tumor
1.1
351
Tumor
1.1
112
Tumor
1.0
715
Tumor
1.0
445
Tumor
1.0
745
Tumor
1.0
355
Tumor
0.9
571
Tumor
0.9
1041
Tumor
0.9
357
Tumor
0.9
433
Tumor
0.8
455
Tumor
0.8
535
Tumor
0.8
813
Tumor
0.8
385
Tumor
0.8
743
Tumor
0.8
915
Tumor
0.8
533
Tumor
0.7
737
Tumor
0.7
395
Tumor
0.7
383
Tumor
0.7
387
Tumor
0.7
815
Tumor
0.7
375
Tumor
0.6
861
Tumor
0.6
361
Tumor
0.6
527
Tumor
0.6
161
Tumor
0.6
497
Tumor
0.6
187
Tumor
0.5
487
Tumor
0.5
1025
Tumor
0.5
331
Tumor
0.5
213
Tumor
0.5
145
Tumor
0.4
617
Tumor
0.4
538
Normal
0.4
958
Normal
0.4
665
Tumor
0.4
267
Tumor
0.4
493
Tumor
0.4
426
Normal
0.3
981
Tumor
0.3
515
Tumor
0.3
517
Tumor
0.3
451
Tumor
0.3
963
Tumor
0.3
185
Tumor
0.3
977
Tumor
0.3
297
Tumor
0.3
937
Tumor
0.3
911
Tumor
0.3
952
Normal
0.2
217
Tumor
0.2
368
Normal
0.2
344
Normal
0.2
713
Tumor
0.2
147
Tumor
0.2
554
Normal
0.2
851
Tumor
0.2
968
Normal
0.2
483
Tumor
0.1
231
Tumor
0.1
817
Tumor
0.1
421
Tumor
0.1
424
Normal
0.1
1042
Normal
0.1
1043
Tumor
0.1
957
Tumor
0.1
498
Normal
0.1
312
Normal
0.0
463
Tumor
0.0
411
Tumor
0.0
873
Tumor
0.0
393
Tumor
0.0
261
Tumor
0.0
366
Normal
0.0
874
Normal
0.0
332
Normal
0.0
428
Normal
0.0
257
Tumor
0.0
953
Tumor
0.0
278
Normal
0.0
311
Tumor
0.0
913
Tumor
0.0
353
Tumor
0.0
553
Tumor
0.0
218
Normal
-0.1
698
Normal
-0.1
563
Tumor
-0.1
877
Tumor
-0.1
114
Normal
-0.1
863
Tumor
-0.1
444
Normal
-0.1
271
Tumor
-0.1
171
Tumor
-0.1
313
Tumor
-0.1
228
Normal
-0.1
557
Tumor
-0.1
376
Normal
-0.1
141
Tumor
-0.1
647
Tumor
-0.1
492
Normal
-0.1
214
Normal
-0.1
967
Tumor
-0.1
951
Tumor
-0.2
434
Normal
-0.2
364
Normal
-0.2
285
Tumor
-0.2
1026
Normal
-0.2
436
Normal
-0.2
113
Tumor
-0.2
413
Tumor
-0.2
124
Normal
-0.2
878
Normal
-0.2
976
Normal
-0.2
298
Normal
-0.2
1028
Normal
-0.2
327
Tumor
-0.3
131
Tumor
-0.3
362
Normal
-0.3
636
Normal
-0.3
965
Tumor
-0.3
423
Tumor
-0.3
857
Tumor
-0.3
277
Tumor
-0.3
284
Normal
-0.3
422
Normal
-0.3
446
Normal
-0.3
536
Normal
-0.3
744
Normal
-0.4
172
Normal
-0.4
568
Normal
-0.4
391
Tumor
-0.4
925
Tumor
-0.4
416
Normal
-0.4
452
Normal
-0.4
386
Normal
-0.4
414
Normal
-0.4
1021
Tumor
-0.4
223
Tumor
-0.4
127
Tumor
-0.4
188
Normal
-0.4
867
Tumor
-0.4
186
Normal
-0.4
384
Normal
-0.4
1013
Tumor
-0.4
1027
Tumor
-0.4
258
Normal
-0.5
1022
Normal
-0.5
975
Tumor
-0.5
224
Normal
-0.5
314
Normal
-0.5
435
Tumor
-0.5
448
Normal
-0.5
286
Normal
-0.5
467
Tumor
-0.5
365
Tumor
-0.5
955
Tumor
-0.5
1031
Tumor
-0.5
356
Normal
-0.5
268
Normal
-0.5
342
Normal
-0.5
132
Normal
-0.5
392
Normal
-0.5
272
Normal
-0.5
824
Normal
-0.5
456
Normal
-0.5
432
Normal
-0.5
162
Normal
-0.5
232
Normal
-0.5
212
Normal
-0.6
618
Normal
-0.6
564
Normal
-0.6
574
Normal
-0.6
917
Tumor
-0.6
964
Normal
-0.6
396
Normal
-0.6
966
Normal
-0.6
756
Normal
-0.6
778
Normal
-0.6
746
Normal
-0.6
491
Tumor
-0.6
1032
Normal
-0.6
125
Tumor
-0.6
126
Normal
-0.6
468
Normal
-0.6
1045
Tumor
-0.6
447
Tumor
-0.6
262
Normal
-0.6
341
Tumor
-0.6
142
Normal
-0.7
352
Normal
-0.7
136
Normal
-0.7
546
Normal
-0.7
148
Normal
-0.7
111
Normal
-0.7
642
Normal
-0.7
464
Normal
-0.7
328
Normal
-0.7
138
Normal
-0.7
1044
Normal
-0.7
738
Normal
-0.7
615
Tumor
-0.7
881
Tumor
-0.8
914
Normal
-0.8
415
Tumor
-0.8
627
Tumor
-0.8
354
Normal
-0.8
412
Normal
-0.8
943
Tumor
-0.8
222
Normal
-0.8
358
Normal
-0.8
394
Normal
-0.8
728
Normal
-0.9
1015
Tumor
-0.9
696
Normal
-0.9
984
Normal
-0.9
868
Normal
-0.9
283
Tumor
-0.9
864
Normal
-0.9
488
Normal
-1.0
671
Tumor
-1.0
388
Normal
-1.0
534
Normal
-1.0
1046
Normal
-1.0
721
Tumor
-1.0
924
Normal
-1.0
938
Normal
-1.0
686
Normal
-1.0
742
Normal
-1.0
662
Normal
-1.0
191
Tumor
-1.0
918
Normal
-1.0
956
Normal
-1.0
944
Normal
-1.0
921
Tumor
-1.1
695
Tumor
-1.1
494
Normal
-1.1
466
Normal
-1.1
866
Normal
-1.1
716
Normal
-1.1
123
Tumor
-1.1
814
Normal
-1.1
465
Tumor
-1.1
982
Normal
-1.1
128
Normal
-1.1
816
Normal
-1.1
741
Tumor
-1.1
558
Normal
-1.2
672
Normal
-1.2
427
Tumor
-1.2
195
Tumor
-1.2
882
Normal
-1.2
663
Tumor
-1.2
1016
Normal
-1.2
912
Normal
-1.2
714
Normal
-1.2
922
Normal
-1.2
146
Normal
-1.2
723
Tumor
-1.2
722
Normal
-1.2
484
Normal
-1.3
572
Normal
-1.3
474
Normal
-1.3
916
Normal
-1.3
777
Tumor
-1.3
221
Tumor
-1.3
528
Normal
-1.3
518
Normal
-1.3
461
Tumor
-1.3
865
Tumor
-1.4
727
Tumor
-1.4
862
Normal
-1.4
1014
Normal
-1.4
211
Tumor
-1.4
724
Normal
-1.5
786
Normal
-1.5
196
Normal
-1.5
978
Normal
-1.5
785
Tumor
-1.5
648
Normal
-1.5
664
Normal
-1.5
516
Normal
-1.5
884
Normal
-1.6
628
Normal
-1.6
616
Normal
-1.6
513
Tumor
-1.6
192
Normal
-1.7
954
Normal
-1.7
818
Normal
-1.8
926
Normal
-1.8
852
Normal
-1.9
666
Normal
-1.9
524
Normal
-2.1
641
Tumor
-2.5
526
Normal
-2.5
462
Normal
-2.6
482
Normal
-2.7
858
Normal
-2.8
514
Normal
-2.8
478
Normal
-3.4
481
Tumor
-4.4
472
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.