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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LDHA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
155.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
772.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
601.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
600.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
512.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
499.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
452.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
431.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
418.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
393.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
393.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
383.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
354.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
347.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
342.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
331.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
330.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
328.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
328.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
325.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
314.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
310.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
309.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
306.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
302.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
299.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
299.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
292.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
289.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
285.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
282.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
279.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
274.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
272.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
270.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
264.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
259.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
259.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
257.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
253.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
253.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
250.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
249.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
248.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
248.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
247.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
247.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
247.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
244.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
244.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
242.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
241.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
239.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
235.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
233.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
230.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
226.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
226.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
225.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
225.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
224.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
224.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
224.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
223.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
222.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
220.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
219.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
219.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
218.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
217.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
217.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
217.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
216.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
216.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
215.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
215.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
214.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
214.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
213.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
212.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
212.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
209.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
205.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
204.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
202.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
202.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
202.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
202.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
201.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
199.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
199.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
197.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
196.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
195.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
195.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
194.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
192.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
191.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
189.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
189.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
188.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
184.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
183.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
183.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
181.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
180.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
180.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
179.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
178.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
174.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
173.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
173.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
173.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
172.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
172.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
171.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
169.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
169.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
169.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
168.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
167.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
167.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
166.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
166.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
166.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
165.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
165.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
165.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
164.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
163.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
163.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
163.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
163.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
162.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
161.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
161.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
159.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
159.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
159.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
158.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
158.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
158.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
157.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
155.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
154.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
154.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
153.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
153.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
153.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
153.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
152.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
152.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
152.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
151.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
150.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
150.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
150.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
149.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
148.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
147.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
147.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
147.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
146.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
145.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
144.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
144.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
144.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
144.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
143.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
143.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
142.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
142.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
141.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
141.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
140.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
139.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
139.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
138.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
138.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
137.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
137.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
137.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
137.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
136.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
136.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
136.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
135.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
134.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
133.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
133.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
133.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
132.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
132.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
132.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
131.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
130.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
129.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
128.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
128.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
127.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
126.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
125.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
123.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
123.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
123.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
122.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
121.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
121.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
120.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
120.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
119.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
118.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
118.9
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
118.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
118.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
118.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
117.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
116.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
115.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
115.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
115.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
115.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
115.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
114.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
113.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
113.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
112.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
112.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
112.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
111.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
111.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
111.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
110.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
110.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
110.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
110.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
108.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
108.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
107.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
107.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
106.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
106.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
106.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
105.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
105.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
104.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
103.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
102.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
102.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
101.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
101.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
101.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
100.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
99.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
98.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
98.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
98.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
97.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
97.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
96.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
96.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
95.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
95.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
95.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
95.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
94.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
94.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
94.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
94.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
94.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
94.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
93.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
93.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
93.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
92.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
92.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
91.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
91.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
91.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
90.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
89.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
88.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
88.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
88.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
88.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
87.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
86.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
86.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
86.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
86.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
86.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
84.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
84.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
84.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
83.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
82.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
82.6
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
82.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
82.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
82.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
81.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
80.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
80.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
79.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
78.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
76.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
75.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
75.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
75.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
74.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
74.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
73.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
73.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
72.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
71.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
71.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
71.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
70.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
69.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
69.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
67.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
66.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
65.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
64.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
63.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
61.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
61.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
60.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
60.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
60.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
59.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
58.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
58.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
58.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
57.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
56.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
55.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
53.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
52.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
52.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
52.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
48.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
46.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
46.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
44.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
43.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
42.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
40.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
40.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
40.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
39.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
38.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
38.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
37.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
36.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
31.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
30.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
29.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
25.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LDHA is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
294.3
Number of samples
231
Samples
Sample
Description
TPM
DO45307
0 years, female, NA, stage:4, dead, 240 days
1244.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
1226.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
1212.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
1193.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
1105.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
1098.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
1026.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
939.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
921.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
896.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
849.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
784.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
696.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
690.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
690.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
688.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
667.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
619.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
611.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
603.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
595.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
535.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
494.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
474.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
473.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
464.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
450.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
440.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
435.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
433.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
412.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
408.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
404.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
403.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
398.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
398.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
391.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
388.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
380.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
378.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
377.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
375.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
372.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
372.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
357.5
DO45239
0 years, male, NA, stage:2, alive, 870 days
352.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
346.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
338.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
334.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
330.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
327.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
327.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
326.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
322.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
320.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
320.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
319.5
DO50804
0 years, male, NA, stage:2, alive, 720 days
319.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
318.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
317.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
313.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
310.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
309.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
309.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
308.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
307.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
304.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
298.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
298.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
295.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
295.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
294.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
291.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
290.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
289.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
286.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
284.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
284.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
284.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
282.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
281.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
280.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
279.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
276.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
275.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
269.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
269.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
268.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
267.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
266.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
264.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
264.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
264.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
261.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
260.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
259.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
258.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
258.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
253.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
253.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
251.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
251.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
250.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
250.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
249.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
249.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
247.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
246.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
242.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
241.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
241.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
240.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
238.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
236.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
235.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
234.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
233.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
233.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
233.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
232.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
232.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
229.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
226.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
225.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
225.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
224.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
223.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
223.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
222.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
221.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
220.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
220.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
219.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
219.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
217.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
216.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
215.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
215.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
215.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
212.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
212.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
210.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
209.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
208.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
208.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
207.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
206.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
205.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
205.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
205.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
205.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
203.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
200.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
199.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
198.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
198.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
197.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
197.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
196.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
195.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
194.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
192.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
191.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
189.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
189.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
186.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
185.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
184.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
182.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
182.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
181.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
180.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
179.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
177.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
176.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
174.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
174.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
174.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
172.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
172.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
165.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
164.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
164.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
163.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
163.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
162.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
162.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
161.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
159.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
157.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
156.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
156.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
152.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
152.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
152.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
151.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
146.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
145.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
145.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
145.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
143.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
141.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
139.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
137.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
137.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
137.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
130.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
129.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
128.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
127.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
124.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
121.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
117.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
114.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
113.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
106.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
106.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
103.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
99.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
94.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
90.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
89.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
86.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
85.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
82.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
78.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
72.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
72.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
70.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
69.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
50.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
1.2
257
Tumor
1.0
635
Tumor
1.0
285
Tumor
0.9
778
Normal
0.8
125
Tumor
0.8
527
Tumor
0.7
685
Tumor
0.7
981
Tumor
0.7
218
Normal
0.7
392
Normal
0.6
723
Tumor
0.6
815
Tumor
0.6
952
Normal
0.5
1022
Normal
0.5
195
Tumor
0.5
968
Normal
0.5
414
Normal
0.4
426
Normal
0.4
394
Normal
0.4
714
Normal
0.4
286
Normal
0.4
217
Tumor
0.4
1026
Normal
0.4
528
Normal
0.4
114
Normal
0.4
523
Tumor
0.4
1043
Tumor
0.4
756
Normal
0.4
393
Tumor
0.4
1044
Normal
0.4
818
Normal
0.4
353
Tumor
0.4
558
Normal
0.4
746
Normal
0.4
982
Normal
0.4
113
Tumor
0.4
342
Normal
0.3
526
Normal
0.3
375
Tumor
0.3
851
Tumor
0.3
573
Tumor
0.3
488
Normal
0.3
311
Tumor
0.3
466
Normal
0.3
436
Normal
0.3
124
Normal
0.3
376
Normal
0.3
1014
Normal
0.3
698
Normal
0.3
636
Normal
0.3
298
Normal
0.3
468
Normal
0.3
327
Tumor
0.3
424
Normal
0.3
696
Normal
0.3
456
Normal
0.3
111
Normal
0.3
873
Tumor
0.3
368
Normal
0.3
858
Normal
0.3
912
Normal
0.3
862
Normal
0.3
664
Normal
0.3
738
Normal
0.3
332
Normal
0.3
1016
Normal
0.3
786
Normal
0.3
1028
Normal
0.3
616
Normal
0.3
742
Normal
0.3
568
Normal
0.3
824
Normal
0.3
1046
Normal
0.2
866
Normal
0.2
448
Normal
0.2
686
Normal
0.2
816
Normal
0.2
663
Tumor
0.2
642
Normal
0.2
446
Normal
0.2
344
Normal
0.2
452
Normal
0.2
482
Normal
0.2
232
Normal
0.2
312
Normal
0.2
128
Normal
0.2
186
Normal
0.2
883
Tumor
0.2
618
Normal
0.2
196
Normal
0.2
857
Tumor
0.2
222
Normal
0.2
443
Tumor
0.2
313
Tumor
0.2
518
Normal
0.2
1021
Tumor
0.2
358
Normal
0.2
432
Normal
0.2
228
Normal
0.2
462
Normal
0.2
924
Normal
0.2
352
Normal
0.2
162
Normal
0.2
648
Normal
0.2
422
Normal
0.2
554
Normal
0.2
716
Normal
0.2
314
Normal
0.2
728
Normal
0.2
364
Normal
0.2
944
Normal
0.2
223
Tumor
0.2
142
Normal
0.2
557
Tumor
0.2
278
Normal
0.2
148
Normal
0.2
413
Tumor
0.2
672
Normal
0.1
524
Normal
0.1
984
Normal
0.1
617
Tumor
0.1
755
Tumor
0.1
396
Normal
0.1
666
Normal
0.1
385
Tumor
0.1
918
Normal
0.1
926
Normal
0.1
387
Tumor
0.1
214
Normal
0.1
882
Normal
0.1
386
Normal
0.1
464
Normal
0.1
517
Tumor
0.1
172
Normal
0.1
628
Normal
0.1
391
Tumor
0.1
132
Normal
0.1
983
Tumor
0.1
864
Normal
0.1
431
Tumor
0.1
564
Normal
0.1
145
Tumor
0.1
455
Tumor
0.1
722
Normal
0.1
146
Normal
0.1
868
Normal
0.1
328
Normal
0.1
878
Normal
0.1
914
Normal
0.1
356
Normal
0.1
572
Normal
0.1
428
Normal
0.1
546
Normal
0.1
563
Tumor
0.1
744
Normal
0.1
813
Tumor
0.1
136
Normal
0.1
224
Normal
0.1
884
Normal
0.1
343
Tumor
0.1
354
Normal
0.1
574
Normal
0.1
966
Normal
0.0
444
Normal
0.0
514
Normal
0.0
461
Tumor
0.0
953
Tumor
0.0
284
Normal
0.0
388
Normal
0.0
472
Normal
0.0
283
Tumor
0.0
964
Normal
0.0
976
Normal
0.0
258
Normal
0.0
297
Tumor
0.0
665
Tumor
0.0
421
Tumor
0.0
474
Normal
0.0
874
Normal
0.0
341
Tumor
0.0
494
Normal
0.0
191
Tumor
0.0
955
Tumor
0.0
956
Normal
0.0
954
Normal
0.0
484
Normal
0.0
478
Normal
0.0
978
Normal
0.0
662
Normal
0.0
852
Normal
0.0
536
Normal
0.0
384
Normal
0.0
545
Tumor
0.0
395
Tumor
0.0
938
Normal
0.0
661
Tumor
0.0
498
Normal
0.0
138
Normal
0.0
126
Normal
0.0
1032
Normal
0.0
185
Tumor
0.0
922
Normal
0.0
262
Normal
0.0
192
Normal
-0.1
737
Tumor
-0.1
537
Tumor
-0.1
268
Normal
-0.1
171
Tumor
-0.1
967
Tumor
-0.1
272
Normal
-0.1
538
Normal
-0.1
817
Tumor
-0.1
135
Tumor
-0.1
331
Tumor
-0.1
212
Normal
-0.1
917
Tumor
-0.1
721
Tumor
-0.1
925
Tumor
-0.1
567
Tumor
-0.1
467
Tumor
-0.1
958
Normal
-0.1
515
Tumor
-0.1
412
Normal
-0.1
416
Normal
-0.1
361
Tumor
-0.1
147
Tumor
-0.1
534
Normal
-0.2
867
Tumor
-0.2
367
Tumor
-0.2
916
Normal
-0.2
447
Tumor
-0.2
951
Tumor
-0.2
695
Tumor
-0.2
188
Normal
-0.2
957
Tumor
-0.2
492
Normal
-0.2
516
Normal
-0.2
713
Tumor
-0.2
715
Tumor
-0.2
451
Tumor
-0.2
1042
Normal
-0.2
187
Tumor
-0.2
366
Normal
-0.2
434
Normal
-0.2
362
Normal
-0.2
877
Tumor
-0.2
445
Tumor
-0.2
127
Tumor
-0.2
213
Tumor
-0.2
923
Tumor
-0.3
743
Tumor
-0.3
383
Tumor
-0.3
433
Tumor
-0.3
671
Tumor
-0.3
481
Tumor
-0.3
697
Tumor
-0.3
937
Tumor
-0.3
141
Tumor
-0.3
161
Tumor
-0.3
865
Tumor
-0.3
137
Tumor
-0.3
112
Tumor
-0.3
814
Normal
-0.3
615
Tumor
-0.3
777
Tumor
-0.3
823
Tumor
-0.3
861
Tumor
-0.3
724
Normal
-0.3
267
Tumor
-0.3
227
Tumor
-0.4
1025
Tumor
-0.4
435
Tumor
-0.4
487
Tumor
-0.4
727
Tumor
-0.4
785
Tumor
-0.4
975
Tumor
-0.4
423
Tumor
-0.4
943
Tumor
-0.4
465
Tumor
-0.5
627
Tumor
-0.5
1015
Tumor
-0.5
1013
Tumor
-0.5
463
Tumor
-0.5
745
Tumor
-0.5
427
Tumor
-0.5
963
Tumor
-0.5
493
Tumor
-0.5
513
Tumor
-0.5
881
Tumor
-0.5
471
Tumor
-0.5
553
Tumor
-0.5
357
Tumor
-0.5
363
Tumor
-0.5
535
Tumor
-0.6
351
Tumor
-0.6
271
Tumor
-0.6
221
Tumor
-0.6
571
Tumor
-0.6
491
Tumor
-0.6
647
Tumor
-0.6
1031
Tumor
-0.6
477
Tumor
-0.6
415
Tumor
-0.6
425
Tumor
-0.6
1041
Tumor
-0.7
261
Tumor
-0.7
913
Tumor
-0.7
365
Tumor
-0.7
641
Tumor
-0.7
131
Tumor
-0.7
277
Tumor
-0.7
483
Tumor
-0.7
211
Tumor
-0.7
977
Tumor
-0.7
915
Tumor
-0.7
355
Tumor
-0.8
533
Tumor
-0.8
863
Tumor
-0.8
497
Tumor
-0.8
525
Tumor
-0.8
965
Tumor
-0.8
1045
Tumor
-0.8
921
Tumor
-0.9
741
Tumor
-0.9
123
Tumor
-0.9
231
Tumor
-1.1
911
Tumor
-1.2
473
Tumor
-1.4
411
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.