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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IAH1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
20.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
86.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
73.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
66.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
63.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
61.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
52.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
50.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
48.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
48.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
48.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
43.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
42.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
41.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
41.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
40.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
40.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
40.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
40.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
38.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
38.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
38.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
37.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
37.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
35.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
35.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
34.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
34.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
34.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
33.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
32.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
32.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
32.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
32.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
31.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
31.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
31.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
30.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
30.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
29.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
29.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
29.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
29.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
28.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
28.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
28.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
28.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
28.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
28.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
27.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
27.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
27.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
27.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
27.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
26.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
26.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
26.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
26.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
26.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
26.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
25.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
25.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
24.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
24.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
24.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
23.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
23.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
23.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
23.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
23.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
23.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
23.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
23.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
23.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
23.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
23.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
22.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
22.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
22.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
22.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
22.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
22.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
22.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
22.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
22.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
22.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
21.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
21.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
21.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
21.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
21.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
21.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
21.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
20.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
20.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
20.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
20.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
20.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
20.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
20.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
19.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
19.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
19.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
19.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
19.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
19.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
19.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
19.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
18.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
18.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
18.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
18.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
18.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
18.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
18.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
18.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
18.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
18.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
18.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
17.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
17.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
17.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
17.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
17.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
17.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
17.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
17.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
17.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
17.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
17.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
17.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
17.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
17.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
17.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
17.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
16.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
16.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
16.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
16.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
16.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
16.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
16.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.2
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
16.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
16.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
16.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
15.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
15.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
15.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
15.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
15.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
15.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
15.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
15.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
14.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
14.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
14.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.2
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
14.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
14.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
14.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
14.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
13.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
13.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
13.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
13.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
13.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
13.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
13.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
12.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
12.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
12.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
11.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
11.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
11.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
11.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
10.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
9.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
9.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
5.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IAH1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.0
Number of samples
231
Samples
Sample
Description
TPM
DO45303
0 years, female, NA, stage:3, alive, 990 days
101.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
101.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
94.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
92.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
81.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
76.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
67.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
66.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
66.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
66.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
63.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
63.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
62.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
62.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
60.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
59.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
58.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
57.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
57.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
56.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
55.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
55.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
54.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
54.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
53.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
52.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
52.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
52.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
51.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
51.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
51.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
51.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
51.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
50.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
50.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
50.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
49.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
48.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
48.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
48.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
48.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
48.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
48.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
48.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
48.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
47.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
47.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
47.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
46.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
46.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
46.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
46.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
46.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
45.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
45.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
44.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
44.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
44.6
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
44.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
43.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
43.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
42.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
42.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
42.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
42.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
41.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
41.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
40.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
39.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
39.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
39.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
39.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
39.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
39.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
38.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
38.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
38.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
37.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
37.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
36.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
36.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
36.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
36.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
36.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
36.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
36.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
36.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
35.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
35.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
35.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
35.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
35.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
35.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
35.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
35.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
35.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
34.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
34.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
34.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
34.7
DO48700
0 years, female, NA, stage:2, alive, 810 days
34.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
34.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
34.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
34.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
34.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
34.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
34.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
33.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
33.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
33.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
33.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
33.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
33.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
33.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
32.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
32.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
32.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
32.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
32.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
32.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
32.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
31.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
31.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
31.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
31.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
30.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
30.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
30.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
30.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
30.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
30.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
30.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
29.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
29.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
29.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
29.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
29.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
29.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
29.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
29.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
29.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
29.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
28.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
28.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
28.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
28.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
28.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
28.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
28.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
28.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
27.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
27.9
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
27.4
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
26.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
26.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
26.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
26.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
26.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
25.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
25.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
25.3
DO45199
0 years, female, NA, stage:2, alive, 1350 days
25.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
25.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
25.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
24.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
24.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
24.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
24.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
24.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
23.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
23.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
23.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
23.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
22.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
22.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
22.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
21.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
21.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
21.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
20.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
19.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
19.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
19.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
15.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
13.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
393
Tumor
1.1
1043
Tumor
1.1
257
Tumor
0.7
981
Tumor
0.6
445
Tumor
0.5
727
Tumor
0.5
171
Tumor
0.5
365
Tumor
0.5
1027
Tumor
0.5
361
Tumor
0.5
423
Tumor
0.5
425
Tumor
0.5
977
Tumor
0.4
357
Tumor
0.4
517
Tumor
0.4
1013
Tumor
0.4
125
Tumor
0.4
915
Tumor
0.4
741
Tumor
0.4
137
Tumor
0.4
131
Tumor
0.3
685
Tumor
0.3
123
Tumor
0.3
743
Tumor
0.3
672
Normal
0.3
436
Normal
0.3
271
Tumor
0.3
278
Normal
0.3
431
Tumor
0.3
432
Normal
0.3
435
Tumor
0.3
114
Normal
0.3
523
Tumor
0.3
662
Normal
0.3
957
Tumor
0.2
742
Normal
0.2
376
Normal
0.2
642
Normal
0.2
111
Normal
0.2
664
Normal
0.2
881
Tumor
0.2
444
Normal
0.2
882
Normal
0.2
452
Normal
0.2
455
Tumor
0.2
738
Normal
0.2
852
Normal
0.2
952
Normal
0.2
426
Normal
0.2
785
Tumor
0.2
615
Tumor
0.2
975
Tumor
0.2
422
Normal
0.2
746
Normal
0.2
446
Normal
0.2
362
Normal
0.2
616
Normal
0.2
147
Tumor
0.2
911
Tumor
0.2
816
Normal
0.2
356
Normal
0.2
618
Normal
0.2
172
Normal
0.2
648
Normal
0.2
1022
Normal
0.1
268
Normal
0.1
124
Normal
0.1
818
Normal
0.1
715
Tumor
0.1
462
Normal
0.1
666
Normal
0.1
228
Normal
0.1
628
Normal
0.1
955
Tumor
0.1
777
Tumor
0.1
858
Normal
0.1
778
Normal
0.1
538
Normal
0.1
128
Normal
0.1
416
Normal
0.1
394
Normal
0.1
214
Normal
0.1
384
Normal
0.1
146
Normal
0.1
515
Tumor
0.1
824
Normal
0.1
665
Tumor
0.1
465
Tumor
0.1
874
Normal
0.1
744
Normal
0.1
421
Tumor
0.1
312
Normal
0.1
272
Normal
0.1
953
Tumor
0.1
866
Normal
0.1
297
Tumor
0.1
368
Normal
0.1
113
Tumor
0.1
574
Normal
0.1
728
Normal
0.1
912
Normal
0.1
262
Normal
0.1
196
Normal
0.1
456
Normal
0.1
186
Normal
0.1
126
Normal
0.1
392
Normal
0.1
617
Tumor
0.1
723
Tumor
0.1
461
Tumor
0.1
471
Tumor
0.1
984
Normal
0.1
786
Normal
0.1
386
Normal
0.1
195
Tumor
0.1
414
Normal
0.1
358
Normal
0.1
564
Normal
0.1
967
Tumor
0.1
546
Normal
0.1
222
Normal
0.1
232
Normal
0.1
755
Tumor
0.0
921
Tumor
0.0
424
Normal
0.0
923
Tumor
0.0
344
Normal
0.0
443
Tumor
0.0
1028
Normal
0.0
162
Normal
0.0
286
Normal
0.0
188
Normal
0.0
434
Normal
0.0
878
Normal
0.0
136
Normal
0.0
138
Normal
0.0
387
Tumor
0.0
192
Normal
0.0
884
Normal
0.0
722
Normal
0.0
528
Normal
0.0
224
Normal
0.0
573
Tumor
0.0
716
Normal
0.0
737
Tumor
0.0
756
Normal
0.0
864
Normal
0.0
148
Normal
0.0
1044
Normal
0.0
332
Normal
0.0
868
Normal
0.0
284
Normal
0.0
572
Normal
0.0
366
Normal
0.0
298
Normal
0.0
464
Normal
0.0
695
Tumor
0.0
466
Normal
0.0
342
Normal
0.0
863
Tumor
0.0
141
Tumor
0.0
745
Tumor
0.0
127
Tumor
0.0
447
Tumor
0.0
145
Tumor
0.0
976
Normal
0.0
364
Normal
0.0
388
Normal
0.0
877
Tumor
0.0
314
Normal
0.0
1032
Normal
0.0
636
Normal
0.0
861
Tumor
0.0
862
Normal
0.0
873
Tumor
0.0
132
Normal
0.0
185
Tumor
0.0
641
Tumor
0.0
558
Normal
0.0
966
Normal
0.0
724
Normal
0.0
568
Normal
0.0
468
Normal
-0.1
714
Normal
-0.1
721
Tumor
-0.1
1026
Normal
-0.1
534
Normal
-0.1
916
Normal
-0.1
477
Tumor
-0.1
231
Tumor
-0.1
1016
Normal
-0.1
498
Normal
-0.1
218
Normal
-0.1
142
Normal
-0.1
492
Normal
-0.1
696
Normal
-0.1
313
Tumor
-0.1
396
Normal
-0.1
412
Normal
-0.1
484
Normal
-0.1
867
Tumor
-0.1
857
Tumor
-0.1
191
Tumor
-0.1
212
Normal
-0.1
1046
Normal
-0.1
922
Normal
-0.1
427
Tumor
-0.1
428
Normal
-0.1
815
Tumor
-0.1
518
Normal
-0.1
161
Tumor
-0.1
516
Normal
-0.1
1014
Normal
-0.1
354
Normal
-0.1
472
Normal
-0.1
135
Tumor
-0.1
968
Normal
-0.1
478
Normal
-0.1
258
Normal
-0.1
663
Tumor
-0.1
527
Tumor
-0.1
451
Tumor
-0.1
1041
Tumor
-0.1
563
Tumor
-0.1
328
Normal
-0.1
982
Normal
-0.1
914
Normal
-0.1
958
Normal
-0.1
557
Tumor
-0.1
327
Tumor
-0.1
448
Normal
-0.1
463
Tumor
-0.1
814
Normal
-0.1
686
Normal
-0.1
635
Tumor
-0.1
698
Normal
-0.1
433
Tumor
-0.2
223
Tumor
-0.2
474
Normal
-0.2
978
Normal
-0.2
553
Tumor
-0.2
375
Tumor
-0.2
383
Tumor
-0.2
514
Normal
-0.2
487
Tumor
-0.2
488
Normal
-0.2
352
Normal
-0.2
1042
Normal
-0.2
918
Normal
-0.2
311
Tumor
-0.2
411
Tumor
-0.2
494
Normal
-0.2
956
Normal
-0.2
954
Normal
-0.2
526
Normal
-0.2
813
Tumor
-0.2
1021
Tumor
-0.2
213
Tumor
-0.2
227
Tumor
-0.2
1015
Tumor
-0.2
943
Tumor
-0.2
1031
Tumor
-0.2
924
Normal
-0.2
187
Tumor
-0.2
671
Tumor
-0.2
221
Tumor
-0.2
926
Normal
-0.2
963
Tumor
-0.3
983
Tumor
-0.3
567
Tumor
-0.3
817
Tumor
-0.3
545
Tumor
-0.3
554
Normal
-0.3
395
Tumor
-0.3
938
Normal
-0.3
112
Tumor
-0.3
964
Normal
-0.3
925
Tumor
-0.3
513
Tumor
-0.3
483
Tumor
-0.3
353
Tumor
-0.3
491
Tumor
-0.3
627
Tumor
-0.3
965
Tumor
-0.3
385
Tumor
-0.3
823
Tumor
-0.3
661
Tumor
-0.3
351
Tumor
-0.3
1025
Tumor
-0.3
944
Normal
-0.4
524
Normal
-0.4
391
Tumor
-0.4
525
Tumor
-0.4
217
Tumor
-0.4
481
Tumor
-0.4
571
Tumor
-0.4
647
Tumor
-0.4
285
Tumor
-0.4
467
Tumor
-0.4
277
Tumor
-0.4
367
Tumor
-0.4
355
Tumor
-0.4
343
Tumor
-0.4
697
Tumor
-0.4
536
Normal
-0.4
261
Tumor
-0.5
482
Normal
-0.5
283
Tumor
-0.5
493
Tumor
-0.5
883
Tumor
-0.5
917
Tumor
-0.5
415
Tumor
-0.5
341
Tumor
-0.5
713
Tumor
-0.5
865
Tumor
-0.6
211
Tumor
-0.6
537
Tumor
-0.6
913
Tumor
-0.7
363
Tumor
-0.7
533
Tumor
-0.7
267
Tumor
-0.7
413
Tumor
-0.7
951
Tumor
-0.8
497
Tumor
-0.8
1045
Tumor
-0.8
937
Tumor
-0.8
535
Tumor
-0.9
851
Tumor
-0.9
473
Tumor
-0.9
331
Tumor
-0.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
