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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC38A2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
41.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
206.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
194.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
163.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
161.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
149.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
149.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
148.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
146.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
136.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
118.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
117.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
115.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
108.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
108.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
107.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
102.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
101.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
101.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
100.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
99.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
99.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
97.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
92.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
91.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
90.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
90.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
90.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
89.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
89.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
87.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
86.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
86.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
82.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
82.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
82.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
80.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
80.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
79.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
78.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
78.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
76.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
76.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
75.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
75.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
74.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
74.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
73.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
73.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
73.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
73.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
71.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
70.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
69.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
69.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
68.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
68.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
68.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
68.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
67.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
66.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
66.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
66.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
64.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
64.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
63.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
63.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
63.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
62.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
62.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
62.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
61.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
61.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
61.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
61.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
59.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
59.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
58.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
58.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
58.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
57.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
57.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
57.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
57.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
56.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
56.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
56.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
56.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
55.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
55.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
55.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
55.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
54.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
54.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
53.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
52.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
52.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
51.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
51.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
51.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
51.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
50.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
50.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
50.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
49.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
49.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
49.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
48.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
48.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
47.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
47.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
47.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
47.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
46.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
46.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
46.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
45.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
45.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
45.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
44.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
44.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
44.6
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
44.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
44.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
43.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
43.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
43.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
43.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
42.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
42.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
42.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
42.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
42.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
42.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
41.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
40.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
40.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
40.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
40.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
39.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
39.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
39.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
38.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
38.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
38.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
38.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
38.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
38.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
38.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
38.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
37.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
37.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
37.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
37.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
37.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
36.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
36.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
36.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
36.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
36.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
36.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
36.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
35.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
35.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
35.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
35.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
35.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
35.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
34.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
34.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
34.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
34.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
34.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
34.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
33.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
33.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
33.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
33.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
33.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
32.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
32.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
31.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
31.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
31.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
31.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
31.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
30.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
30.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
30.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
30.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
30.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
29.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
29.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
29.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
29.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
29.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
29.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
28.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
28.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
28.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
28.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
28.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
28.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
28.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
28.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
28.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
27.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
27.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
27.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
26.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
26.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
26.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
26.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
26.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
26.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
25.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
25.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
24.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
24.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
24.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
24.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
24.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
24.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
24.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
23.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
23.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
23.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
23.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
22.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
22.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
22.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
22.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
22.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
22.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
22.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
22.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
21.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
21.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
20.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
20.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
20.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
20.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
20.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
19.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
19.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
19.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
19.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
19.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
19.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
19.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
18.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
18.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
18.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
18.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
17.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
17.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
16.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
16.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
16.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
16.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
16.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
15.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
15.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
15.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
15.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
15.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
14.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
14.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
14.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
13.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
13.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
13.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
11.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
11.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
11.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
9.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
8.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
8.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
7.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SLC38A2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
64.4
Number of samples
231
Samples
Sample
Description
TPM
DO23544
0 years, male, NA, stage:2, alive, 960 days
347.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
286.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
271.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
239.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
227.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
186.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
163.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
157.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
146.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
144.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
142.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
139.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
135.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
132.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
132.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
130.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
128.0
DO50798
0 years, male, NA, stage:3, dead, 30 days
120.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
118.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
117.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
114.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
112.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
108.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
107.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
107.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
106.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
105.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
105.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
105.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
104.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
103.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
102.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
101.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
101.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
98.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
97.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
97.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
94.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
94.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
93.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
92.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
90.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
89.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
88.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
88.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
87.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
86.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
86.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
86.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
86.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
84.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
83.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
82.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
82.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
81.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
81.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
80.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
80.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
79.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
79.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
79.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
79.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
79.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
78.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
76.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
75.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
73.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
73.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
72.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
72.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
71.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
70.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
70.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
70.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
69.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
69.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
68.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
67.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
67.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
66.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
66.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
66.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
66.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
65.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
64.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
64.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
64.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
64.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
64.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
64.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
64.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
64.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
64.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
63.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
62.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
62.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
61.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
61.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
61.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
61.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
61.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
61.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
60.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
59.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
58.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
57.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
57.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
57.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
57.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
56.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
56.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
55.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
55.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
55.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
54.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
54.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
53.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
53.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
53.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
53.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
53.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
53.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
53.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
52.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
52.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
51.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
51.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
51.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
51.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
51.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
50.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
49.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
49.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
49.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
49.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
49.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
48.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
48.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
48.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
47.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
47.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
47.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
47.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
46.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
46.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
46.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
46.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
45.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
45.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
45.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
44.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
43.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
43.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
43.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
42.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
42.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
42.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
42.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
42.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
41.3
DO48679
0 years, male, NA, stage:2, alive, 1200 days
41.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
41.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
41.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
41.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
40.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
40.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
39.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
39.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
39.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
39.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
38.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
37.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
36.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
36.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
36.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
35.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
34.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
34.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
33.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
32.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
32.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
32.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
30.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
30.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
30.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
29.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
29.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
29.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
28.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
27.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
26.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
25.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
25.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
24.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
24.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
23.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
23.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
23.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
21.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
21.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
20.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
16.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
15.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
13.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
12.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
11.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
367
Tumor
2.0
573
Tumor
1.8
413
Tumor
1.5
343
Tumor
1.3
697
Tumor
1.1
422
Normal
1.1
861
Tumor
1.1
715
Tumor
1.0
425
Tumor
1.0
535
Tumor
0.9
671
Tumor
0.8
493
Tumor
0.8
983
Tumor
0.7
967
Tumor
0.7
816
Normal
0.7
223
Tumor
0.7
685
Tumor
0.7
352
Normal
0.6
943
Tumor
0.6
363
Tumor
0.6
351
Tumor
0.6
536
Normal
0.6
815
Tumor
0.6
494
Normal
0.6
497
Tumor
0.6
385
Tumor
0.6
342
Normal
0.6
421
Tumor
0.5
1041
Tumor
0.5
968
Normal
0.5
428
Normal
0.5
353
Tumor
0.5
976
Normal
0.4
135
Tumor
0.4
227
Tumor
0.4
877
Tumor
0.4
665
Tumor
0.4
443
Tumor
0.4
332
Normal
0.3
358
Normal
0.3
344
Normal
0.3
448
Normal
0.3
661
Tumor
0.3
187
Tumor
0.3
937
Tumor
0.3
356
Normal
0.3
467
Tumor
0.3
354
Normal
0.3
383
Tumor
0.3
124
Normal
0.3
492
Normal
0.3
126
Normal
0.3
217
Tumor
0.2
424
Normal
0.2
482
Normal
0.2
978
Normal
0.2
444
Normal
0.2
186
Normal
0.2
311
Tumor
0.2
1028
Normal
0.2
498
Normal
0.2
125
Tumor
0.2
557
Tumor
0.2
431
Tumor
0.2
728
Normal
0.2
283
Tumor
0.2
261
Tumor
0.2
527
Tumor
0.1
272
Normal
0.1
355
Tumor
0.1
128
Normal
0.1
432
Normal
0.1
214
Normal
0.1
132
Normal
0.1
1014
Normal
0.1
468
Normal
0.1
314
Normal
0.1
713
Tumor
0.1
188
Normal
0.1
824
Normal
0.1
823
Tumor
0.1
722
Normal
0.1
284
Normal
0.1
416
Normal
0.1
341
Tumor
0.1
617
Tumor
0.1
914
Normal
0.1
628
Normal
0.1
136
Normal
0.0
663
Tumor
0.0
364
Normal
0.0
981
Tumor
0.0
228
Normal
0.0
1026
Normal
0.0
412
Normal
0.0
571
Tumor
0.0
944
Normal
0.0
982
Normal
0.0
114
Normal
0.0
213
Tumor
0.0
984
Normal
0.0
262
Normal
0.0
865
Tumor
0.0
866
Normal
0.0
447
Tumor
0.0
277
Tumor
0.0
491
Tumor
0.0
231
Tumor
0.0
113
Tumor
-0.1
721
Tumor
-0.1
145
Tumor
-0.1
564
Normal
-0.1
574
Normal
-0.1
517
Tumor
-0.1
852
Normal
-0.1
878
Normal
-0.1
137
Tumor
-0.1
415
Tumor
-0.1
328
Normal
-0.1
1015
Tumor
-0.1
446
Normal
-0.1
218
Normal
-0.1
192
Normal
-0.1
463
Tumor
-0.1
434
Normal
-0.2
232
Normal
-0.2
572
Normal
-0.2
716
Normal
-0.2
954
Normal
-0.2
423
Tumor
-0.2
965
Tumor
-0.2
414
Normal
-0.2
963
Tumor
-0.2
111
Normal
-0.2
563
Tumor
-0.2
1032
Normal
-0.2
267
Tumor
-0.2
148
Normal
-0.2
487
Tumor
-0.2
286
Normal
-0.2
426
Normal
-0.2
387
Tumor
-0.2
394
Normal
-0.2
724
Normal
-0.2
436
Normal
-0.2
196
Normal
-0.2
1046
Normal
-0.2
384
Normal
-0.2
867
Tumor
-0.2
451
Tumor
-0.2
567
Tumor
-0.2
956
Normal
-0.2
388
Normal
-0.2
433
Tumor
-0.3
1025
Tumor
-0.3
955
Tumor
-0.3
524
Normal
-0.3
558
Normal
-0.3
112
Tumor
-0.3
211
Tumor
-0.3
258
Normal
-0.3
195
Tumor
-0.3
366
Normal
-0.3
742
Normal
-0.3
331
Tumor
-0.3
743
Tumor
-0.3
474
Normal
-0.3
1042
Normal
-0.3
427
Tumor
-0.3
488
Normal
-0.3
224
Normal
-0.3
456
Normal
-0.3
395
Tumor
-0.3
862
Normal
-0.3
142
Normal
-0.3
222
Normal
-0.3
172
Normal
-0.3
568
Normal
-0.3
185
Tumor
-0.3
514
Normal
-0.3
1022
Normal
-0.3
666
Normal
-0.3
686
Normal
-0.3
786
Normal
-0.3
138
Normal
-0.3
464
Normal
-0.3
268
Normal
-0.3
298
Normal
-0.4
672
Normal
-0.4
362
Normal
-0.4
361
Tumor
-0.4
455
Tumor
-0.4
915
Tumor
-0.4
127
Tumor
-0.4
478
Normal
-0.4
952
Normal
-0.4
958
Normal
-0.4
851
Tumor
-0.4
1044
Normal
-0.4
917
Tumor
-0.4
714
Normal
-0.4
696
Normal
-0.4
327
Tumor
-0.4
376
Normal
-0.4
814
Normal
-0.4
375
Tumor
-0.4
636
Normal
-0.4
664
Normal
-0.4
818
Normal
-0.4
864
Normal
-0.4
445
Tumor
-0.4
528
Normal
-0.4
533
Tumor
-0.4
913
Tumor
-0.4
396
Normal
-0.4
146
Normal
-0.4
465
Tumor
-0.4
554
Normal
-0.4
756
Normal
-0.4
212
Normal
-0.4
462
Normal
-0.5
452
Normal
-0.5
392
Normal
-0.5
162
Normal
-0.5
466
Normal
-0.5
523
Tumor
-0.5
1016
Normal
-0.5
918
Normal
-0.5
435
Tumor
-0.5
966
Normal
-0.5
161
Tumor
-0.5
191
Tumor
-0.5
483
Tumor
-0.5
745
Tumor
-0.5
391
Tumor
-0.5
357
Tumor
-0.5
883
Tumor
-0.5
964
Normal
-0.5
386
Normal
-0.5
698
Normal
-0.5
368
Normal
-0.5
538
Normal
-0.5
471
Tumor
-0.5
744
Normal
-0.5
868
Normal
-0.5
545
Tumor
-0.5
526
Normal
-0.5
857
Tumor
-0.5
411
Tumor
-0.6
738
Normal
-0.6
884
Normal
-0.6
874
Normal
-0.6
147
Tumor
-0.6
537
Tumor
-0.6
534
Normal
-0.6
755
Tumor
-0.6
977
Tumor
-0.6
662
Normal
-0.6
481
Tumor
-0.6
472
Normal
-0.6
817
Tumor
-0.6
648
Normal
-0.6
518
Normal
-0.6
257
Tumor
-0.6
546
Normal
-0.6
461
Tumor
-0.6
873
Tumor
-0.7
313
Tumor
-0.7
312
Normal
-0.7
285
Tumor
-0.7
1045
Tumor
-0.7
813
Tumor
-0.7
1027
Tumor
-0.7
975
Tumor
-0.7
278
Normal
-0.7
916
Normal
-0.7
938
Normal
-0.7
1013
Tumor
-0.7
858
Normal
-0.7
925
Tumor
-0.7
882
Normal
-0.7
778
Normal
-0.7
926
Normal
-0.7
741
Tumor
-0.7
171
Tumor
-0.7
746
Normal
-0.7
141
Tumor
-0.7
922
Normal
-0.7
365
Tumor
-0.8
695
Tumor
-0.8
616
Normal
-0.8
516
Normal
-0.8
221
Tumor
-0.8
727
Tumor
-0.8
881
Tumor
-0.8
393
Tumor
-0.8
618
Normal
-0.8
951
Tumor
-0.8
473
Tumor
-0.8
953
Tumor
-0.8
737
Tumor
-0.8
923
Tumor
-0.9
123
Tumor
-0.9
912
Normal
-0.9
647
Tumor
-0.9
924
Normal
-0.9
271
Tumor
-0.9
723
Tumor
-0.9
484
Normal
-0.9
777
Tumor
-0.9
863
Tumor
-1.0
785
Tumor
-1.0
515
Tumor
-1.0
642
Normal
-1.0
477
Tumor
-1.0
1021
Tumor
-1.1
525
Tumor
-1.1
957
Tumor
-1.1
911
Tumor
-1.2
615
Tumor
-1.2
553
Tumor
-1.3
513
Tumor
-1.3
627
Tumor
-1.4
297
Tumor
-1.4
635
Tumor
-1.4
641
Tumor
-1.5
131
Tumor
-1.6
921
Tumor
-1.7
1031
Tumor
-2.1
1043
Tumor
-4.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
