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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPHLN1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
46.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
44.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
41.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
41.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
40.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
39.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
39.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
39.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
37.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
37.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
37.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
35.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
33.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
32.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
32.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
32.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
31.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
29.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
29.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
29.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
27.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
27.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
27.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
26.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
26.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
25.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
25.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
25.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
25.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
24.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
24.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
24.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
23.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
23.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
23.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
23.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
23.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
23.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
23.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
22.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
22.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
22.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
21.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
21.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
21.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
21.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
21.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
21.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
20.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
20.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
20.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
20.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
20.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
20.3
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
20.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
20.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
20.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
19.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
19.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
19.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
19.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
19.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
19.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
19.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
19.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
19.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
19.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
19.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
18.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
18.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
18.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
18.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
18.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
18.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
18.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
18.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
17.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
17.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
17.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
17.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
17.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
17.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
17.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
17.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
17.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
17.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
16.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
16.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
16.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
16.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
16.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
16.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
16.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
15.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
15.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
15.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
15.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
15.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
15.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
15.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
14.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
14.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
14.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
14.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
13.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
13.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
13.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
12.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
12.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
12.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
12.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
12.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
12.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
12.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
12.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
12.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
12.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
12.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
11.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
11.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
11.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
11.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
11.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
11.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
11.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
10.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
10.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
10.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
10.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
10.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
9.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
9.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
9.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
9.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
9.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
9.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
8.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
8.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
8.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
8.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.3
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
5.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PPHLN1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.9
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
53.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
48.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
31.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
29.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
27.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
26.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
26.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
25.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
25.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.1
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
23.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
23.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
23.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
22.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
22.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
22.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
20.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
20.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
20.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
20.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
20.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
20.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
20.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
19.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
19.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
19.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
19.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
18.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
18.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
18.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
18.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
18.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
18.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
17.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
17.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
17.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
17.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
17.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
17.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
17.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
16.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
16.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
16.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
16.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
16.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
15.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
15.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
15.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
15.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
15.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
14.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
14.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
14.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
14.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.1
DO45219
0 years, male, NA, stage:2, alive, 1080 days
14.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
13.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
13.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.4
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
13.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
13.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
12.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
12.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
12.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
12.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.6
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
10.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.4
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
10.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
10.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
9.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
9.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
8.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
7.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
6.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.1
937
Tumor
1.0
865
Tumor
1.0
537
Tumor
1.0
967
Tumor
1.0
965
Tumor
0.9
951
Tumor
0.9
411
Tumor
0.9
351
Tumor
0.9
983
Tumor
0.8
535
Tumor
0.8
957
Tumor
0.8
815
Tumor
0.8
211
Tumor
0.7
545
Tumor
0.7
1013
Tumor
0.7
385
Tumor
0.7
367
Tumor
0.7
355
Tumor
0.7
737
Tumor
0.7
533
Tumor
0.7
331
Tumor
0.7
953
Tumor
0.6
131
Tumor
0.6
883
Tumor
0.6
777
Tumor
0.6
743
Tumor
0.6
413
Tumor
0.6
425
Tumor
0.6
313
Tumor
0.6
661
Tumor
0.6
463
Tumor
0.6
943
Tumor
0.5
391
Tumor
0.5
375
Tumor
0.5
487
Tumor
0.5
923
Tumor
0.5
297
Tumor
0.5
227
Tumor
0.5
877
Tumor
0.5
383
Tumor
0.5
921
Tumor
0.5
917
Tumor
0.5
641
Tumor
0.5
387
Tumor
0.5
473
Tumor
0.5
1031
Tumor
0.5
517
Tumor
0.5
483
Tumor
0.5
525
Tumor
0.5
685
Tumor
0.5
695
Tumor
0.4
161
Tumor
0.4
471
Tumor
0.4
814
Normal
0.4
523
Tumor
0.4
977
Tumor
0.4
135
Tumor
0.4
285
Tumor
0.4
963
Tumor
0.4
724
Normal
0.4
817
Tumor
0.4
553
Tumor
0.4
755
Tumor
0.4
431
Tumor
0.4
357
Tumor
0.4
283
Tumor
0.4
141
Tumor
0.4
813
Tumor
0.4
881
Tumor
0.4
513
Tumor
0.4
311
Tumor
0.4
477
Tumor
0.4
341
Tumor
0.3
671
Tumor
0.3
493
Tumor
0.3
447
Tumor
0.3
741
Tumor
0.3
527
Tumor
0.3
415
Tumor
0.3
491
Tumor
0.3
395
Tumor
0.3
727
Tumor
0.3
492
Normal
0.3
851
Tumor
0.3
647
Tumor
0.3
567
Tumor
0.3
615
Tumor
0.3
823
Tumor
0.3
665
Tumor
0.3
123
Tumor
0.3
443
Tumor
0.3
112
Tumor
0.3
461
Tumor
0.3
137
Tumor
0.3
785
Tumor
0.3
267
Tumor
0.3
427
Tumor
0.3
1021
Tumor
0.3
573
Tumor
0.2
363
Tumor
0.2
715
Tumor
0.2
663
Tumor
0.2
925
Tumor
0.2
1025
Tumor
0.2
467
Tumor
0.2
524
Normal
0.2
863
Tumor
0.2
981
Tumor
0.2
515
Tumor
0.2
1041
Tumor
0.2
571
Tumor
0.2
213
Tumor
0.2
221
Tumor
0.2
873
Tumor
0.2
498
Normal
0.2
563
Tumor
0.2
217
Tumor
0.2
857
Tumor
0.2
127
Tumor
0.2
557
Tumor
0.2
538
Normal
0.2
433
Tumor
0.2
223
Tumor
0.2
861
Tumor
0.2
1015
Tumor
0.1
365
Tumor
0.1
361
Tumor
0.1
911
Tumor
0.1
231
Tumor
0.1
975
Tumor
0.1
455
Tumor
0.1
444
Normal
0.1
536
Normal
0.1
435
Tumor
0.1
913
Tumor
0.1
384
Normal
0.1
478
Normal
0.1
451
Tumor
0.1
125
Tumor
0.1
1043
Tumor
0.1
488
Normal
0.1
514
Normal
0.1
195
Tumor
0.1
554
Normal
0.0
185
Tumor
0.0
516
Normal
0.0
277
Tumor
0.0
915
Tumor
0.0
966
Normal
0.0
481
Tumor
0.0
546
Normal
0.0
484
Normal
0.0
192
Normal
0.0
145
Tumor
0.0
171
Tumor
0.0
558
Normal
0.0
1016
Normal
0.0
697
Tumor
0.0
257
Tumor
0.0
465
Tumor
0.0
916
Normal
0.0
1045
Tumor
0.0
534
Normal
0.0
187
Tumor
0.0
982
Normal
0.0
984
Normal
0.0
448
Normal
0.0
393
Tumor
0.0
1014
Normal
0.0
327
Tumor
0.0
396
Normal
0.0
142
Normal
0.0
728
Normal
0.0
434
Normal
0.0
572
Normal
0.0
778
Normal
0.0
723
Tumor
0.0
955
Tumor
0.0
1044
Normal
0.0
146
Normal
0.0
343
Tumor
0.0
494
Normal
0.0
446
Normal
-0.1
852
Normal
-0.1
744
Normal
-0.1
713
Tumor
-0.1
445
Tumor
-0.1
635
Tumor
-0.1
938
Normal
-0.1
918
Normal
-0.1
954
Normal
-0.1
366
Normal
-0.1
416
Normal
-0.1
564
Normal
-0.1
924
Normal
-0.1
867
Tumor
-0.1
218
Normal
-0.1
1027
Tumor
-0.1
368
Normal
-0.1
526
Normal
-0.1
386
Normal
-0.1
138
Normal
-0.1
328
Normal
-0.1
362
Normal
-0.1
518
Normal
-0.1
224
Normal
-0.1
113
Tumor
-0.1
672
Normal
-0.1
818
Normal
-0.1
745
Tumor
-0.1
474
Normal
-0.1
456
Normal
-0.1
528
Normal
-0.1
978
Normal
-0.1
944
Normal
-0.1
472
Normal
-0.1
268
Normal
-0.1
376
Normal
-0.1
412
Normal
-0.1
756
Normal
-0.1
136
Normal
-0.1
874
Normal
-0.1
866
Normal
-0.1
196
Normal
-0.1
452
Normal
-0.1
968
Normal
-0.1
698
Normal
-0.1
926
Normal
-0.1
436
Normal
-0.1
298
Normal
-0.1
332
Normal
-0.2
232
Normal
-0.2
786
Normal
-0.2
312
Normal
-0.2
1026
Normal
-0.2
1032
Normal
-0.2
617
Tumor
-0.2
191
Tumor
-0.2
1042
Normal
-0.2
627
Tumor
-0.2
721
Tumor
-0.2
574
Normal
-0.2
922
Normal
-0.2
258
Normal
-0.2
686
Normal
-0.2
568
Normal
-0.2
482
Normal
-0.2
222
Normal
-0.2
858
Normal
-0.2
464
Normal
-0.2
666
Normal
-0.2
214
Normal
-0.2
958
Normal
-0.2
353
Tumor
-0.2
147
Tumor
-0.2
864
Normal
-0.2
964
Normal
-0.2
696
Normal
-0.2
956
Normal
-0.2
664
Normal
-0.2
423
Tumor
-0.2
278
Normal
-0.2
462
Normal
-0.2
642
Normal
-0.2
364
Normal
-0.2
952
Normal
-0.2
816
Normal
-0.2
128
Normal
-0.2
1028
Normal
-0.2
421
Tumor
-0.2
352
Normal
-0.2
356
Normal
-0.2
271
Tumor
-0.2
284
Normal
-0.2
878
Normal
-0.2
262
Normal
-0.2
1046
Normal
-0.2
228
Normal
-0.3
714
Normal
-0.3
722
Normal
-0.3
746
Normal
-0.3
392
Normal
-0.3
742
Normal
-0.3
286
Normal
-0.3
618
Normal
-0.3
716
Normal
-0.3
824
Normal
-0.3
662
Normal
-0.3
132
Normal
-0.3
314
Normal
-0.3
738
Normal
-0.3
636
Normal
-0.3
124
Normal
-0.3
976
Normal
-0.3
882
Normal
-0.3
912
Normal
-0.3
188
Normal
-0.3
884
Normal
-0.3
1022
Normal
-0.3
126
Normal
-0.3
868
Normal
-0.3
212
Normal
-0.3
862
Normal
-0.3
111
Normal
-0.3
468
Normal
-0.3
261
Tumor
-0.3
114
Normal
-0.3
628
Normal
-0.3
648
Normal
-0.3
432
Normal
-0.4
466
Normal
-0.4
394
Normal
-0.4
272
Normal
-0.4
388
Normal
-0.4
354
Normal
-0.4
616
Normal
-0.4
422
Normal
-0.4
914
Normal
-0.4
428
Normal
-0.4
426
Normal
-0.4
344
Normal
-0.5
148
Normal
-0.5
162
Normal
-0.5
186
Normal
-0.5
424
Normal
-0.5
172
Normal
-0.6
342
Normal
-0.6
414
Normal
-0.6
358
Normal
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
