MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.6 nTPM
HPA Brain:60.9 nTPM
GTEx:17.6 nTPM
FANTOM5:108.5 Scaled Tags Per Million
Pig:32.4 nTPM
Mouse:61.4 nTPM
Allen mouse:2.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 60.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 58.5
2586 Male, age 75, left hemisphere 68.1
2666 Male, age 74, left hemisphere 63.8
1827 Male, age 72, unknown 63.1
2828 Female, age 72, unknown 60.9
2411 Female, age 72, unknown 58.7
1870 Female, age 42, unknown 58.0
2019 Male, age 18, unknown 57.1
1833 Male, age 53, unknown 56.1
1830 Male, age 51, unknown 49.6
2219 Male, age 76, both hemispheres 49.0
Dorsal raphe nucleus
nTPM: 56.6
2016 Female, age 72, unknown 58.5
1828 Male, age 53, unknown 57.5
2750 Male, age 76, both hemispheres 57.1
2298 Female, age 72, unknown 55.2
2047 Male, age 72, unknown 54.6
Inferior colliculus
nTPM: 58.4
1890 Male, age 53, unknown 60.4
1848 Female, age 42, unknown 58.4
2849 Male, age 72, unknown 57.9
2097 Female, age 72, unknown 57.1
Median raphe nucleus
nTPM: 53.5
2220 Male, age 76, midline 53.5
Periaquaductal grey, anterior
nTPM: 55.2
1947 Male, age 18, unknown 56.6
1795 Male, age 51, unknown 56.5
2502 Female, age 75, unknown 52.4
Periaquaductal grey, dorsal
nTPM: 55.6
2464 Female, age 72, unknown 58.2
1840 Male, age 53, unknown 56.4
1831 Male, age 72, unknown 55.3
2850 Male, age 76, both hemispheres 52.5
Periaquaductal grey, lateral
nTPM: 52.1
2053 Male, age 18, unknown 59.3
2140 Male, age 76, both hemispheres 50.2
2272 Male, age 74, both hemispheres 46.8
Pretectal area
nTPM: 60.9
1817 Female, age 42, unknown 72.3
1816 Male, age 51, unknown 69.0
1944 Female, age 72, unknown 68.8
1815 Male, age 53, unknown 66.1
2007 Male, age 72, unknown 65.9
2667 Female, age 75, unknown 61.5
2825 Male, age 18, unknown 58.1
2224 Female, age 72, unknown 57.9
2407 Male, age 75, both hemispheres 51.9
2316 Male, age 76, right hemisphere 49.9
2273 Male, age 74, both hemispheres 48.9
Red nucleus
nTPM: 57.3
2503 Female, age 72, unknown 64.1
2584 Male, age 75, left hemisphere 62.8
1821 Female, age 72, unknown 62.2
2725 Female, age 75, unknown 59.4
2588 Male, age 74, left hemisphere 59.3
2823 Male, age 76, right hemisphere 56.7
2769 Male, age 72, unknown 56.0
2785 Male, age 18, unknown 54.7
1954 Female, age 42, unknown 54.6
2227 Male, age 72, unknown 54.1
1865 Male, age 51, unknown 53.9
1904 Male, age 53, unknown 50.5
Substantia nigra
nTPM: 57.9
1889 Female, age 72, unknown 64.9
2583 Male, age 75, right hemisphere 61.4
2665 Male, age 74, both hemispheres 61.3
1941 Male, age 53, unknown 60.5
1916 Female, age 42, unknown 60.2
2241 Male, age 72, unknown 59.7
1851 Male, age 51, unknown 56.9
2590 Female, age 75, unknown 53.0
2699 Male, age 18, unknown 52.9
2409 Female, age 72, unknown 48.8
Superior colliculus
nTPM: 59.0
2087 Female, age 72, unknown 64.6
2668 Female, age 75, unknown 64.0
1796 Male, age 53, unknown 62.7
2261 Male, age 18, unknown 60.7
1839 Male, age 51, unknown 58.3
1913 Female, age 42, unknown 58.0
2664 Male, age 75, both hemispheres 56.5
2587 Male, age 74, left hemisphere 55.9
1995 Male, age 72, unknown 54.7
1895 Male, age 76, right hemisphere 54.6
Ventral tegmental area
nTPM: 55.1
1942 Male, age 51, unknown 60.0
2223 Female, age 72, unknown 58.2
2410 Female, age 72, unknown 56.4
1915 Female, age 42, unknown 54.2
2218 Male, age 76, both hemispheres 52.1
2021 Male, age 53, unknown 49.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 139

Max nTPM: 35.9
Min nTPM: 8.5
Std nTPM: 4.0
Median nTPM: 17.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 35.9
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 30.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 29.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 28.0
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 24.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 24.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 24.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 23.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 23.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 22.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 22.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 108.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 108.5
FF:10158-103A5 76 years, female 108.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 32.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.0
Samples: 4

Max nTPM: 29.1
Min nTPM: 24.1
Sample A Female 29.1
Sample B Female 24.1
Sample C Male 28.7
Sample D Male 26.0
Midbrain
nTPM: 32.4
Samples: 4

Max nTPM: 39.4
Min nTPM: 23.0
Sample A Female 39.4
Sample B Female 23.0
Sample C Male 34.6
Sample D Male 32.5
Periaqueductal gray
nTPM: 24.2
Samples: 3

Max nTPM: 25.4
Min nTPM: 22.2
Sample B Female 25.4
Sample C Male 25.0
Sample D Male 22.2
Superior colliculi
nTPM: 27.2
Samples: 4

Max nTPM: 32.4
Min nTPM: 17.3
Sample A Female 30.4
Sample B Female 17.3
Sample C Male 32.4
Sample D Male 28.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 61.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.4
Samples: 4

Max nTPM: 68.3
Min nTPM: 54.3
Sample A Male 54.3
Sample B Male 60.3
Sample C Female 68.3
Sample D Female 62.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.9
73573199 Antisense, RP_051121_03_E02, Mouse strain C57BL/6J (56 days, male) 2.9

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