MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.0 nTPM
HPA Brain:5.1 nTPM
GTEx:3.0 nTPM
FANTOM5:1.3 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:6.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 5.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.1
1827 Male, age 72, unknown 5.8
2828 Female, age 72, unknown 5.5
2411 Female, age 72, unknown 5.4
2586 Male, age 75, left hemisphere 5.4
2666 Male, age 74, left hemisphere 5.4
1830 Male, age 51, unknown 5.2
1833 Male, age 53, unknown 5.1
1870 Female, age 42, unknown 4.6
2019 Male, age 18, unknown 4.6
2219 Male, age 76, both hemispheres 4.0
Dorsal raphe nucleus
nTPM: 4.4
2016 Female, age 72, unknown 4.7
2298 Female, age 72, unknown 4.6
2750 Male, age 76, both hemispheres 4.5
1828 Male, age 53, unknown 4.2
2047 Male, age 72, unknown 4.0
Inferior colliculus
nTPM: 4.0
1848 Female, age 42, unknown 4.4
1890 Male, age 53, unknown 3.9
2849 Male, age 72, unknown 3.9
2097 Female, age 72, unknown 3.7
Median raphe nucleus
nTPM: 3.5
2220 Male, age 76, midline 3.5
Periaquaductal grey, anterior
nTPM: 5.1
1947 Male, age 18, unknown 5.6
1795 Male, age 51, unknown 4.9
2502 Female, age 75, unknown 4.8
Periaquaductal grey, dorsal
nTPM: 4.7
1831 Male, age 72, unknown 5.1
2464 Female, age 72, unknown 4.9
1840 Male, age 53, unknown 4.7
2850 Male, age 76, both hemispheres 4.2
Periaquaductal grey, lateral
nTPM: 5.1
2140 Male, age 76, both hemispheres 5.2
2272 Male, age 74, both hemispheres 5.1
2053 Male, age 18, unknown 5.0
Pretectal area
nTPM: 5.1
2667 Female, age 75, unknown 6.0
1816 Male, age 51, unknown 5.8
1944 Female, age 72, unknown 5.7
2273 Male, age 74, both hemispheres 5.6
2825 Male, age 18, unknown 5.1
2007 Male, age 72, unknown 4.9
1815 Male, age 53, unknown 4.7
1817 Female, age 42, unknown 4.7
2407 Male, age 75, both hemispheres 4.7
2224 Female, age 72, unknown 4.3
2316 Male, age 76, right hemisphere 4.3
Red nucleus
nTPM: 5.0
1904 Male, age 53, unknown 5.7
1865 Male, age 51, unknown 5.6
2503 Female, age 72, unknown 5.5
2725 Female, age 75, unknown 5.3
2227 Male, age 72, unknown 5.0
2823 Male, age 76, right hemisphere 5.0
1954 Female, age 42, unknown 4.9
2769 Male, age 72, unknown 4.9
2588 Male, age 74, left hemisphere 4.8
2584 Male, age 75, left hemisphere 4.7
2785 Male, age 18, unknown 4.6
1821 Female, age 72, unknown 4.1
Substantia nigra
nTPM: 4.3
2583 Male, age 75, right hemisphere 6.0
1889 Female, age 72, unknown 4.9
2409 Female, age 72, unknown 4.6
2590 Female, age 75, unknown 4.6
2665 Male, age 74, both hemispheres 4.5
1851 Male, age 51, unknown 4.0
2699 Male, age 18, unknown 3.7
1916 Female, age 42, unknown 3.6
1941 Male, age 53, unknown 3.5
2241 Male, age 72, unknown 3.4
Superior colliculus
nTPM: 5.1
2261 Male, age 18, unknown 6.4
2087 Female, age 72, unknown 6.3
1913 Female, age 42, unknown 5.9
1995 Male, age 72, unknown 5.8
1796 Male, age 53, unknown 5.7
1895 Male, age 76, right hemisphere 4.8
1839 Male, age 51, unknown 4.4
2664 Male, age 75, both hemispheres 4.2
2587 Male, age 74, left hemisphere 4.1
2668 Female, age 75, unknown 3.9
Ventral tegmental area
nTPM: 4.1
2410 Female, age 72, unknown 4.9
2021 Male, age 53, unknown 4.4
2223 Female, age 72, unknown 4.4
1942 Male, age 51, unknown 4.0
1915 Female, age 42, unknown 3.6
2218 Male, age 76, both hemispheres 3.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.0
Samples: 139

Max nTPM: 5.8
Min nTPM: 0.9
Std nTPM: 1.0
Median nTPM: 3.0
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 5.8
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 5.5
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 5.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 5.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 5.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 5.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 4.9
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 4.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 4.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 4.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 4.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 1.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1.3
FF:10158-103A5 76 years, female 1.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 6.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.3
Samples: 4

Max nTPM: 8.2
Min nTPM: 5.0
Sample A Female 5.0
Sample B Female 6.5
Sample C Male 5.6
Sample D Male 8.2
Midbrain
nTPM: 6.2
Samples: 4

Max nTPM: 7.4
Min nTPM: 5.3
Sample A Female 7.4
Sample B Female 6.4
Sample C Male 5.3
Sample D Male 5.8
Periaqueductal gray
nTPM: 6.5
Samples: 3

Max nTPM: 6.8
Min nTPM: 6.0
Sample B Female 6.8
Sample C Male 6.6
Sample D Male 6.0
Superior colliculi
nTPM: 6.2
Samples: 4

Max nTPM: 7.9
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 7.9
Sample C Male 5.5
Sample D Male 6.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 6.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.1
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.2
Sample A Male 5.2
Sample B Male 6.6
Sample C Female 5.9
Sample D Female 6.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
71656937 Antisense, RP_050927_04_E10, Mouse strain C57BL/6J (56 days, male) 0.1

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