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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
LAMTOR5 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
114.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
339.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
324.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
301.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
298.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
265.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
264.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
257.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
252.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
242.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
239.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
239.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
238.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
231.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
225.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
224.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
224.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
223.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
219.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
218.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
216.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
213.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
211.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
207.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
206.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
200.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
195.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
195.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
195.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
193.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
191.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
189.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
187.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
186.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
185.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
184.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
181.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
180.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
179.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
174.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
172.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
172.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
169.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
165.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
162.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
161.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
159.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
158.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
156.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
156.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
156.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
155.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
154.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
154.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
153.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
152.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
151.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
150.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
150.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
149.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
148.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
148.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
148.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
147.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
145.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
145.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
144.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
144.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
144.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
144.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
143.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
143.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
143.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
143.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
141.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
140.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
139.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
137.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
136.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
134.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
134.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
134.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
133.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
132.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
132.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
131.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
131.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
130.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
129.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
127.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
126.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
126.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
126.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
126.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
126.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
126.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
125.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
124.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
124.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
124.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
123.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
123.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
123.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
123.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
123.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
123.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
123.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
122.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
122.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
122.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
122.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
122.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
122.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
122.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
121.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
121.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
121.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
121.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
120.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
119.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
119.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
119.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
119.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
119.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
118.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
118.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
118.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
118.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
118.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
117.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
117.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
117.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
117.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
116.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
116.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
116.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
116.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
115.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
115.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
115.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
115.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
115.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
115.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
115.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
114.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
114.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
114.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
113.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
113.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
112.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
112.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
112.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
111.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
111.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
111.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
111.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
111.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
110.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
110.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
109.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
109.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
108.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
108.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
108.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
108.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
108.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
107.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
106.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
106.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
106.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
105.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
105.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
105.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
105.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
105.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
105.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
105.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
104.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
104.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
104.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
104.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
104.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
104.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
103.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
103.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
102.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
102.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
102.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
102.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
101.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
101.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
101.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
100.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
100.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
100.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
99.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
99.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
99.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
99.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
98.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
98.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
98.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
98.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
97.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
97.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
97.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
97.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
97.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
96.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
96.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
96.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
96.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
96.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
96.3
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
96.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
96.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
94.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
94.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
94.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
94.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
94.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
93.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
93.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
93.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
93.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
93.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
92.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
92.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
92.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
91.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
91.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
91.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
91.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
90.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
90.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
90.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
90.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
90.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
90.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
90.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
89.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
89.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
89.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
89.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
89.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
89.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
88.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
88.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
88.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
88.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
88.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
88.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
88.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
88.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
87.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
87.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
87.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
86.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
86.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
86.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
86.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
85.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
85.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
85.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
84.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
84.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
84.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
84.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
84.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
84.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
84.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
84.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
84.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
83.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
83.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
83.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
83.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
83.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
83.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
83.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
83.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
82.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
82.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
82.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
81.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
81.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
81.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
80.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
79.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
79.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
78.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
78.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
77.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
77.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
77.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
77.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
76.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
76.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
76.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
76.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
76.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
75.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
75.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
75.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
75.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
74.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
74.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
74.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
74.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
73.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
73.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
72.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
72.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
72.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
72.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
72.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
72.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
71.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
71.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
71.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
71.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
71.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
71.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
70.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
70.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
69.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
68.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
68.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
68.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
67.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
67.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
67.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
66.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
66.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
66.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
65.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
65.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
65.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
64.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
63.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
63.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
62.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
62.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
61.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
61.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
61.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
60.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
60.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
60.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
59.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
58.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
58.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
57.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
56.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
55.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
54.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
54.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
53.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
52.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
46.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
45.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
44.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.0
533
Tumor
0.9
471
Tumor
0.9
925
Tumor
0.9
1025
Tumor
0.9
851
Tumor
0.8
557
Tumor
0.8
573
Tumor
0.8
283
Tumor
0.8
222
Normal
0.7
478
Normal
0.7
196
Normal
0.7
957
Tumor
0.7
685
Tumor
0.7
498
Normal
0.6
525
Tumor
0.6
715
Tumor
0.6
1041
Tumor
0.6
911
Tumor
0.6
954
Normal
0.6
537
Tumor
0.6
741
Tumor
0.6
517
Tumor
0.6
223
Tumor
0.6
536
Normal
0.6
211
Tumor
0.5
311
Tumor
0.5
491
Tumor
0.5
214
Normal
0.5
745
Tumor
0.5
477
Tumor
0.5
535
Tumor
0.5
363
Tumor
0.5
617
Tumor
0.5
721
Tumor
0.5
353
Tumor
0.5
716
Normal
0.5
917
Tumor
0.5
492
Normal
0.5
218
Normal
0.5
696
Normal
0.5
743
Tumor
0.5
524
Normal
0.5
867
Tumor
0.5
916
Normal
0.5
861
Tumor
0.5
924
Normal
0.5
742
Normal
0.5
124
Normal
0.5
481
Tumor
0.5
131
Tumor
0.5
714
Normal
0.4
728
Normal
0.4
462
Normal
0.4
451
Tumor
0.4
713
Tumor
0.4
1027
Tumor
0.4
952
Normal
0.4
756
Normal
0.4
494
Normal
0.4
686
Normal
0.4
224
Normal
0.4
344
Normal
0.4
697
Tumor
0.4
484
Normal
0.4
192
Normal
0.4
918
Normal
0.4
472
Normal
0.4
553
Tumor
0.4
864
Normal
0.4
1031
Tumor
0.4
314
Normal
0.4
858
Normal
0.4
744
Normal
0.4
474
Normal
0.4
354
Normal
0.4
824
Normal
0.4
926
Normal
0.4
943
Tumor
0.4
862
Normal
0.4
746
Normal
0.3
482
Normal
0.3
866
Normal
0.3
284
Normal
0.3
913
Tumor
0.3
966
Normal
0.3
755
Tumor
0.3
938
Normal
0.3
1028
Normal
0.3
488
Normal
0.3
332
Normal
0.3
212
Normal
0.3
313
Tumor
0.3
976
Normal
0.3
328
Normal
0.3
965
Tumor
0.3
355
Tumor
0.3
923
Tumor
0.3
937
Tumor
0.3
558
Normal
0.3
147
Tumor
0.3
572
Normal
0.3
874
Normal
0.3
364
Normal
0.3
286
Normal
0.3
516
Normal
0.3
967
Tumor
0.3
136
Normal
0.3
312
Normal
0.3
958
Normal
0.3
227
Tumor
0.3
865
Tumor
0.3
968
Normal
0.3
955
Tumor
0.3
738
Normal
0.3
461
Tumor
0.3
352
Normal
0.2
852
Normal
0.2
1021
Tumor
0.2
1045
Tumor
0.2
778
Normal
0.2
963
Tumor
0.2
921
Tumor
0.2
285
Tumor
0.2
922
Normal
0.2
868
Normal
0.2
513
Tumor
0.2
114
Normal
0.2
298
Normal
0.2
228
Normal
0.2
661
Tumor
0.2
727
Tumor
0.2
737
Tumor
0.2
534
Normal
0.2
412
Normal
0.2
1032
Normal
0.2
823
Tumor
0.2
356
Normal
0.2
915
Tumor
0.2
723
Tumor
0.2
526
Normal
0.2
786
Normal
0.2
518
Normal
0.2
863
Tumor
0.2
278
Normal
0.2
514
Normal
0.2
944
Normal
0.2
978
Normal
0.2
1014
Normal
0.2
777
Tumor
0.2
665
Tumor
0.2
395
Tumor
0.2
416
Normal
0.2
1022
Normal
0.2
538
Normal
0.2
111
Normal
0.2
964
Normal
0.2
951
Tumor
0.2
1015
Tumor
0.2
358
Normal
0.2
1026
Normal
0.2
277
Tumor
0.2
217
Tumor
0.2
483
Tumor
0.1
818
Normal
0.1
975
Tumor
0.1
816
Normal
0.1
953
Tumor
0.1
195
Tumor
0.1
628
Normal
0.1
563
Tumor
0.1
698
Normal
0.1
135
Tumor
0.1
956
Normal
0.1
331
Tumor
0.1
977
Tumor
0.1
666
Normal
0.1
722
Normal
0.1
627
Tumor
0.1
546
Normal
0.1
191
Tumor
0.1
1013
Tumor
0.1
1016
Normal
0.1
882
Normal
0.1
487
Tumor
0.1
528
Normal
0.1
724
Normal
0.1
1044
Normal
0.1
616
Normal
0.1
515
Tumor
0.1
554
Normal
0.1
142
Normal
0.1
664
Normal
0.1
641
Tumor
0.1
618
Normal
0.1
615
Tumor
0.1
814
Normal
0.1
126
Normal
0.1
564
Normal
0.1
663
Tumor
0.1
984
Normal
0.1
878
Normal
0.1
647
Tumor
0.1
342
Normal
0.1
447
Tumor
0.1
912
Normal
0.1
672
Normal
0.1
914
Normal
0.1
132
Normal
0.1
1042
Normal
0.1
411
Tumor
0.1
568
Normal
0.0
448
Normal
0.0
297
Tumor
0.0
125
Tumor
0.0
785
Tumor
0.0
497
Tumor
0.0
493
Tumor
0.0
456
Normal
0.0
981
Tumor
0.0
1046
Normal
0.0
232
Normal
0.0
327
Tumor
0.0
466
Normal
0.0
648
Normal
0.0
883
Tumor
0.0
444
Normal
0.0
813
Tumor
0.0
873
Tumor
0.0
857
Tumor
0.0
415
Tumor
0.0
432
Normal
0.0
884
Normal
0.0
982
Normal
0.0
881
Tumor
0.0
258
Normal
0.0
545
Tumor
0.0
375
Tumor
0.0
146
Normal
0.0
571
Tumor
0.0
662
Normal
-0.1
817
Tumor
-0.1
262
Normal
-0.1
113
Tumor
-0.1
671
Tumor
-0.1
148
Normal
-0.1
343
Tumor
-0.1
421
Tumor
-0.1
128
Normal
-0.1
446
Normal
-0.1
464
Normal
-0.1
112
Tumor
-0.1
452
Normal
-0.1
983
Tumor
-0.1
138
Normal
-0.1
434
Normal
-0.1
272
Normal
-0.1
695
Tumor
-0.1
636
Normal
-0.1
574
Normal
-0.1
185
Tumor
-0.1
1043
Tumor
-0.1
387
Tumor
-0.1
267
Tumor
-0.1
468
Normal
-0.1
523
Tumor
-0.1
137
Tumor
-0.2
396
Normal
-0.2
467
Tumor
-0.2
188
Normal
-0.2
877
Tumor
-0.2
392
Normal
-0.2
435
Tumor
-0.2
187
Tumor
-0.2
385
Tumor
-0.2
171
Tumor
-0.2
425
Tumor
-0.2
161
Tumor
-0.2
443
Tumor
-0.2
213
Tumor
-0.2
127
Tumor
-0.2
423
Tumor
-0.2
388
Normal
-0.2
351
Tumor
-0.2
268
Normal
-0.2
436
Normal
-0.2
261
Tumor
-0.2
386
Normal
-0.2
221
Tumor
-0.2
257
Tumor
-0.3
362
Normal
-0.3
123
Tumor
-0.3
642
Normal
-0.3
145
Tumor
-0.3
426
Normal
-0.3
527
Tumor
-0.3
231
Tumor
-0.3
431
Tumor
-0.3
162
Normal
-0.3
186
Normal
-0.3
567
Tumor
-0.3
341
Tumor
-0.3
271
Tumor
-0.3
428
Normal
-0.3
141
Tumor
-0.3
393
Tumor
-0.3
413
Tumor
-0.4
465
Tumor
-0.4
384
Normal
-0.4
172
Normal
-0.4
376
Normal
-0.4
361
Tumor
-0.4
394
Normal
-0.4
635
Tumor
-0.4
366
Normal
-0.4
422
Normal
-0.4
357
Tumor
-0.4
367
Tumor
-0.5
433
Tumor
-0.5
427
Tumor
-0.5
391
Tumor
-0.5
365
Tumor
-0.5
424
Normal
-0.5
455
Tumor
-0.5
463
Tumor
-0.5
815
Tumor
-0.7
414
Normal
-0.7
368
Normal
-0.7
383
Tumor
-0.8
445
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
