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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SORT1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
53.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
49.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
36.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
36.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
35.5
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
30.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
24.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
24.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
24.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
23.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
23.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
22.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
21.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
21.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
20.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
20.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
19.9
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
18.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
18.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
18.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
17.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
17.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
17.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
16.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
15.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
15.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
14.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
14.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
14.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
14.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
13.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
12.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
12.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
12.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
11.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
11.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
11.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
11.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
11.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
11.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
10.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
10.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
9.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
8.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
8.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
8.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
8.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
8.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
7.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
7.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
7.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
7.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
7.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
7.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
6.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
6.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
6.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
6.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
6.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
6.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
5.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
5.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
5.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
4.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
4.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.8
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
3.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
3.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
3.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
2.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
2.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
2.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.3
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
2.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
2.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
1.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
1.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
SORT1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.2
Number of samples
231
Samples
Sample
Description
TPM
DO45205
0 years, female, NA, stage:2, dead, 90 days
37.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
36.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
31.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
29.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
27.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
22.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
15.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
15.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
14.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
14.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
14.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
14.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
13.8
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
13.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
12.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
11.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
11.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.6
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
9.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
8.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
7.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
7.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
6.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
6.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
6.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
5.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
5.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
5.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
5.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
4.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
4.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
4.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
4.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
4.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
3.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
3.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
3.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
3.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
2.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
1.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
1.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
1.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
1.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
1.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.8
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
957
Tumor
1.9
743
Tumor
1.7
777
Tumor
1.6
147
Tumor
1.5
285
Tumor
1.5
967
Tumor
1.4
125
Tumor
1.4
283
Tumor
1.3
351
Tumor
1.2
553
Tumor
1.1
1025
Tumor
1.1
313
Tumor
1.0
513
Tumor
1.0
257
Tumor
1.0
387
Tumor
1.0
737
Tumor
1.0
921
Tumor
1.0
557
Tumor
0.9
131
Tumor
0.9
297
Tumor
0.9
863
Tumor
0.9
491
Tumor
0.9
171
Tumor
0.9
367
Tumor
0.8
851
Tumor
0.8
427
Tumor
0.8
877
Tumor
0.8
965
Tumor
0.7
533
Tumor
0.7
923
Tumor
0.7
331
Tumor
0.7
515
Tumor
0.6
815
Tumor
0.6
671
Tumor
0.5
231
Tumor
0.5
415
Tumor
0.5
375
Tumor
0.5
617
Tumor
0.5
123
Tumor
0.5
868
Normal
0.5
697
Tumor
0.5
913
Tumor
0.5
573
Tumor
0.5
525
Tumor
0.5
661
Tumor
0.5
745
Tumor
0.5
172
Normal
0.5
383
Tumor
0.4
1041
Tumor
0.4
1021
Tumor
0.4
911
Tumor
0.4
741
Tumor
0.4
535
Tumor
0.4
917
Tumor
0.4
527
Tumor
0.4
943
Tumor
0.3
817
Tumor
0.3
416
Normal
0.3
537
Tumor
0.3
271
Tumor
0.3
223
Tumor
0.3
463
Tumor
0.3
455
Tumor
0.3
212
Normal
0.3
385
Tumor
0.3
395
Tumor
0.3
311
Tumor
0.3
433
Tumor
0.3
881
Tumor
0.2
227
Tumor
0.2
141
Tumor
0.2
447
Tumor
0.2
627
Tumor
0.2
421
Tumor
0.2
715
Tumor
0.2
647
Tumor
0.2
393
Tumor
0.2
516
Normal
0.2
571
Tumor
0.1
867
Tumor
0.1
983
Tumor
0.1
545
Tumor
0.1
1031
Tumor
0.1
124
Normal
0.1
536
Normal
0.1
161
Tumor
0.1
567
Tumor
0.1
865
Tumor
0.1
376
Normal
0.1
724
Normal
0.1
363
Tumor
0.1
493
Tumor
0.1
975
Tumor
0.1
721
Tumor
0.0
813
Tumor
0.0
368
Normal
0.0
391
Tumor
0.0
277
Tumor
0.0
185
Tumor
0.0
497
Tumor
0.0
137
Tumor
0.0
727
Tumor
0.0
482
Normal
0.0
355
Tumor
0.0
112
Tumor
0.0
492
Normal
0.0
823
Tumor
0.0
951
Tumor
0.0
135
Tumor
0.0
352
Normal
0.0
461
Tumor
0.0
467
Tumor
0.0
925
Tumor
0.0
963
Tumor
0.0
126
Normal
0.0
451
Tumor
0.0
145
Tumor
0.0
912
Normal
0.0
857
Tumor
0.0
1015
Tumor
0.0
874
Normal
0.0
977
Tumor
-0.1
641
Tumor
-0.1
883
Tumor
-0.1
138
Normal
-0.1
926
Normal
-0.1
267
Tumor
-0.1
953
Tumor
-0.1
411
Tumor
-0.1
187
Tumor
-0.1
284
Normal
-0.1
268
Normal
-0.1
386
Normal
-0.1
916
Normal
-0.1
483
Tumor
-0.1
517
Tumor
-0.1
146
Normal
-0.1
1013
Tumor
-0.1
261
Tumor
-0.2
1043
Tumor
-0.2
672
Normal
-0.2
188
Normal
-0.2
618
Normal
-0.2
361
Tumor
-0.2
698
Normal
-0.2
148
Normal
-0.2
471
Tumor
-0.2
228
Normal
-0.2
958
Normal
-0.2
127
Tumor
-0.2
224
Normal
-0.2
365
Tumor
-0.2
341
Tumor
-0.2
616
Normal
-0.2
873
Tumor
-0.2
396
Normal
-0.2
642
Normal
-0.3
1042
Normal
-0.3
861
Tumor
-0.3
312
Normal
-0.3
113
Tumor
-0.3
286
Normal
-0.3
262
Normal
-0.3
956
Normal
-0.3
422
Normal
-0.3
563
Tumor
-0.3
663
Tumor
-0.3
142
Normal
-0.3
955
Tumor
-0.3
221
Tumor
-0.3
852
Normal
-0.3
481
Tumor
-0.3
976
Normal
-0.3
384
Normal
-0.3
534
Normal
-0.3
1027
Tumor
-0.3
814
Normal
-0.4
628
Normal
-0.4
1045
Tumor
-0.4
744
Normal
-0.4
192
Normal
-0.4
1044
Normal
-0.4
713
Tumor
-0.4
498
Normal
-0.4
128
Normal
-0.4
162
Normal
-0.4
478
Normal
-0.4
982
Normal
-0.4
136
Normal
-0.4
211
Tumor
-0.4
272
Normal
-0.4
186
Normal
-0.4
448
Normal
-0.4
132
Normal
-0.4
818
Normal
-0.4
514
Normal
-0.4
195
Tumor
-0.4
538
Normal
-0.4
114
Normal
-0.4
964
Normal
-0.4
968
Normal
-0.4
615
Tumor
-0.4
864
Normal
-0.4
232
Normal
-0.4
298
Normal
-0.4
423
Tumor
-0.4
862
Normal
-0.4
191
Tumor
-0.4
1032
Normal
-0.4
924
Normal
-0.4
915
Tumor
-0.4
636
Normal
-0.5
546
Normal
-0.5
665
Tumor
-0.5
978
Normal
-0.5
816
Normal
-0.5
554
Normal
-0.5
664
Normal
-0.5
428
Normal
-0.5
443
Tumor
-0.5
444
Normal
-0.5
574
Normal
-0.5
918
Normal
-0.5
662
Normal
-0.5
981
Tumor
-0.5
343
Tumor
-0.5
392
Normal
-0.5
524
Normal
-0.5
328
Normal
-0.5
344
Normal
-0.5
914
Normal
-0.5
445
Tumor
-0.5
866
Normal
-0.5
353
Tumor
-0.5
332
Normal
-0.5
412
Normal
-0.5
558
Normal
-0.5
314
Normal
-0.5
413
Tumor
-0.5
414
Normal
-0.5
258
Normal
-0.6
526
Normal
-0.6
1028
Normal
-0.6
528
Normal
-0.6
1026
Normal
-0.6
494
Normal
-0.6
426
Normal
-0.6
858
Normal
-0.6
366
Normal
-0.6
431
Tumor
-0.6
111
Normal
-0.6
966
Normal
-0.6
214
Normal
-0.6
824
Normal
-0.6
217
Tumor
-0.6
738
Normal
-0.6
424
Normal
-0.6
278
Normal
-0.6
952
Normal
-0.7
327
Tumor
-0.7
572
Normal
-0.7
882
Normal
-0.7
1046
Normal
-0.7
472
Normal
-0.7
984
Normal
-0.7
884
Normal
-0.7
756
Normal
-0.7
474
Normal
-0.7
213
Tumor
-0.7
1022
Normal
-0.7
473
Tumor
-0.7
362
Normal
-0.7
354
Normal
-0.7
394
Normal
-0.7
388
Normal
-0.7
364
Normal
-0.8
666
Normal
-0.8
878
Normal
-0.8
778
Normal
-0.8
356
Normal
-0.8
462
Normal
-0.8
785
Tumor
-0.8
695
Tumor
-0.8
648
Normal
-0.8
922
Normal
-0.8
722
Normal
-0.8
477
Tumor
-0.9
468
Normal
-0.9
518
Normal
-0.9
488
Normal
-0.9
635
Tumor
-0.9
358
Normal
-0.9
218
Normal
-0.9
456
Normal
-0.9
716
Normal
-1.0
742
Normal
-1.0
728
Normal
-1.0
568
Normal
-1.0
342
Normal
-1.0
466
Normal
-1.0
723
Tumor
-1.0
523
Tumor
-1.0
685
Tumor
-1.0
746
Normal
-1.0
222
Normal
-1.0
954
Normal
-1.0
425
Tumor
-1.0
1016
Normal
-1.1
937
Tumor
-1.1
786
Normal
-1.1
755
Tumor
-1.1
464
Normal
-1.1
484
Normal
-1.1
944
Normal
-1.1
564
Normal
-1.1
357
Tumor
-1.1
434
Normal
-1.1
1014
Normal
-1.1
938
Normal
-1.2
487
Tumor
-1.2
686
Normal
-1.2
452
Normal
-1.2
696
Normal
-1.2
196
Normal
-1.2
446
Normal
-1.3
714
Normal
-1.4
435
Tumor
-1.6
465
Tumor
-1.6
436
Normal
-1.8
432
Normal
-1.9
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
