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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSTM3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
132.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
131.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
130.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
97.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
86.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
75.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
72.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
68.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
62.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
60.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
57.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
56.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
55.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
53.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
50.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
49.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
46.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
46.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
45.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
43.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
40.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
39.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
39.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
39.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
38.7
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
37.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
37.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
36.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
35.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
35.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
35.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
31.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
28.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
27.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
26.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
26.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
25.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
24.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
24.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
24.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
24.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
23.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
22.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
21.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
20.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
19.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
19.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
19.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
18.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
18.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
18.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.6
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
17.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
17.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
16.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
16.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
16.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
15.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
14.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
14.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
14.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
14.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
13.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
13.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
13.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
13.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
13.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
12.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
11.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
11.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
10.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
10.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
10.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
9.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
9.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
9.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
9.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
9.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
7.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
7.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
5.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
5.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
4.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
4.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
4.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
4.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
3.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
3.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
3.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
3.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
2.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.7
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
1.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
GSTM3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.9
Number of samples
231
Samples
Sample
Description
TPM
DO23513
0 years, male, NA, stage:3, alive, 1200 days
49.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
47.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
41.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
31.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
25.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
24.0
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
17.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
15.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
15.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
14.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
13.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
10.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
8.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
7.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
7.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
7.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
6.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
6.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
6.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
5.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
4.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
4.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
4.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
3.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
3.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
3.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.2
DO48759
0 years, male, NA, stage:3, alive, 720 days
3.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.6
DO45243
0 years, female, NA, stage:3, alive, 930 days
2.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
2.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
2.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
2.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
2.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
2.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
1.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
1.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
1.6
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
1.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
1.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
1.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
1.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
915
Tumor
2.6
451
Tumor
1.6
861
Tumor
1.5
123
Tumor
1.3
393
Tumor
1.3
741
Tumor
1.2
137
Tumor
1.2
1027
Tumor
1.2
867
Tumor
1.0
452
Normal
1.0
615
Tumor
1.0
715
Tumor
0.9
147
Tumor
0.9
231
Tumor
0.9
257
Tumor
0.8
862
Normal
0.8
491
Tumor
0.8
394
Normal
0.7
573
Tumor
0.7
537
Tumor
0.7
618
Normal
0.7
368
Normal
0.7
186
Normal
0.7
146
Normal
0.7
138
Normal
0.7
114
Normal
0.6
716
Normal
0.6
1022
Normal
0.6
851
Tumor
0.6
957
Tumor
0.5
574
Normal
0.5
857
Tumor
0.5
882
Normal
0.5
426
Normal
0.5
283
Tumor
0.4
456
Normal
0.4
695
Tumor
0.4
192
Normal
0.4
953
Tumor
0.4
567
Tumor
0.4
696
Normal
0.4
367
Tumor
0.4
218
Normal
0.4
351
Tumor
0.4
185
Tumor
0.4
858
Normal
0.4
313
Tumor
0.4
125
Tumor
0.3
534
Normal
0.3
478
Normal
0.3
421
Tumor
0.3
663
Tumor
0.3
145
Tumor
0.3
148
Normal
0.3
727
Tumor
0.3
916
Normal
0.3
386
Normal
0.3
616
Normal
0.3
171
Tumor
0.3
984
Normal
0.2
387
Tumor
0.2
384
Normal
0.2
737
Tumor
0.2
518
Normal
0.2
571
Tumor
0.2
448
Normal
0.2
434
Normal
0.2
432
Normal
0.1
284
Normal
0.1
127
Tumor
0.1
498
Normal
0.1
744
Normal
0.1
431
Tumor
0.1
212
Normal
0.1
742
Normal
0.0
664
Normal
0.0
665
Tumor
0.0
297
Tumor
0.0
391
Tumor
0.0
954
Normal
0.0
943
Tumor
0.0
852
Normal
0.0
628
Normal
0.0
868
Normal
-0.1
923
Tumor
-0.1
546
Normal
-0.1
111
Normal
-0.1
128
Normal
-0.1
545
Tumor
-0.1
968
Normal
-0.1
865
Tumor
-0.1
477
Tumor
-0.1
967
Tumor
-0.1
131
Tumor
-0.1
261
Tumor
-0.1
136
Normal
-0.1
385
Tumor
-0.1
474
Normal
-0.1
536
Normal
-0.1
413
Tumor
-0.2
383
Tumor
-0.2
617
Tumor
-0.2
661
Tumor
-0.2
344
Normal
-0.2
422
Normal
-0.2
124
Normal
-0.2
126
Normal
-0.2
1041
Tumor
-0.2
214
Normal
-0.2
685
Tumor
-0.3
517
Tumor
-0.3
1013
Tumor
-0.3
455
Tumor
-0.3
572
Normal
-0.3
746
Normal
-0.3
538
Normal
-0.3
224
Normal
-0.3
568
Normal
-0.3
1044
Normal
-0.3
952
Normal
-0.3
516
Normal
-0.3
342
Normal
-0.3
412
Normal
-0.3
738
Normal
-0.3
135
Tumor
-0.3
743
Tumor
-0.3
563
Tumor
-0.3
1021
Tumor
-0.3
217
Tumor
-0.3
911
Tumor
-0.4
142
Normal
-0.4
223
Tumor
-0.4
983
Tumor
-0.4
647
Tumor
-0.4
352
Normal
-0.4
672
Normal
-0.4
525
Tumor
-0.4
196
Normal
-0.4
874
Normal
-0.4
472
Normal
-0.4
188
Normal
-0.4
558
Normal
-0.4
878
Normal
-0.4
723
Tumor
-0.4
698
Normal
-0.4
494
Normal
-0.4
881
Tumor
-0.4
366
Normal
-0.4
354
Normal
-0.4
554
Normal
-0.4
627
Tumor
-0.4
462
Normal
-0.4
877
Tumor
-0.4
468
Normal
-0.4
564
Normal
-0.4
1028
Normal
-0.4
228
Normal
-0.5
866
Normal
-0.5
362
Normal
-0.5
466
Normal
-0.5
963
Tumor
-0.5
864
Normal
-0.5
958
Normal
-0.5
113
Tumor
-0.5
816
Normal
-0.5
298
Normal
-0.5
195
Tumor
-0.5
161
Tumor
-0.5
172
Normal
-0.5
492
Normal
-0.5
642
Normal
-0.5
815
Tumor
-0.5
464
Normal
-0.5
396
Normal
-0.5
332
Normal
-0.6
388
Normal
-0.6
392
Normal
-0.6
272
Normal
-0.6
756
Normal
-0.6
535
Tumor
-0.6
982
Normal
-0.6
376
Normal
-0.6
463
Tumor
-0.6
697
Tumor
-0.6
1026
Normal
-0.6
447
Tumor
-0.6
976
Normal
-0.6
1016
Normal
-0.6
924
Normal
-0.6
533
Tumor
-0.6
416
Normal
-0.6
666
Normal
-0.6
778
Normal
-0.6
314
Normal
-0.6
232
Normal
-0.6
662
Normal
-0.6
268
Normal
-0.6
271
Tumor
-0.6
1014
Normal
-0.6
191
Tumor
-0.6
1046
Normal
-0.6
883
Tumor
-0.7
132
Normal
-0.7
528
Normal
-0.7
786
Normal
-0.7
162
Normal
-0.7
488
Normal
-0.7
482
Normal
-0.7
364
Normal
-0.7
375
Tumor
-0.7
423
Tumor
-0.7
461
Tumor
-0.7
278
Normal
-0.7
365
Tumor
-0.7
966
Normal
-0.7
467
Tumor
-0.7
343
Tumor
-0.7
824
Normal
-0.7
497
Tumor
-0.7
446
Normal
-0.7
944
Normal
-0.7
964
Normal
-0.7
922
Normal
-0.7
925
Tumor
-0.7
914
Normal
-0.8
444
Normal
-0.8
471
Tumor
-0.8
884
Normal
-0.8
411
Tumor
-0.8
722
Normal
-0.8
425
Tumor
-0.8
415
Tumor
-0.8
262
Normal
-0.8
341
Tumor
-0.8
823
Tumor
-0.8
918
Normal
-0.8
285
Tumor
-0.8
728
Normal
-0.8
938
Normal
-0.8
356
Normal
-0.8
956
Normal
-0.8
926
Normal
-0.8
258
Normal
-0.9
222
Normal
-0.9
424
Normal
-0.9
358
Normal
-0.9
331
Tumor
-0.9
636
Normal
-0.9
141
Tumor
-0.9
814
Normal
-0.9
311
Tumor
-0.9
487
Tumor
-0.9
648
Normal
-0.9
818
Normal
-0.9
514
Normal
-0.9
353
Tumor
-0.9
1042
Normal
-0.9
714
Normal
-1.0
484
Normal
-1.0
465
Tumor
-1.0
435
Tumor
-1.0
414
Normal
-1.0
328
Normal
-1.0
686
Normal
-1.0
312
Normal
-1.1
641
Tumor
-1.1
1032
Normal
-1.1
755
Tumor
-1.1
433
Tumor
-1.1
395
Tumor
-1.1
713
Tumor
-1.1
817
Tumor
-1.1
721
Tumor
-1.1
286
Normal
-1.1
724
Normal
-1.1
912
Normal
-1.2
524
Normal
-1.2
1043
Tumor
-1.2
1025
Tumor
-1.2
211
Tumor
-1.3
813
Tumor
-1.3
921
Tumor
-1.3
187
Tumor
-1.3
427
Tumor
-1.3
221
Tumor
-1.3
1015
Tumor
-1.3
213
Tumor
-1.3
363
Tumor
-1.4
863
Tumor
-1.4
428
Normal
-1.4
745
Tumor
-1.4
785
Tumor
-1.4
436
Normal
-1.4
527
Tumor
-1.4
1045
Tumor
-1.4
873
Tumor
-1.4
553
Tumor
-1.5
975
Tumor
-1.5
483
Tumor
-1.5
355
Tumor
-1.5
112
Tumor
-1.6
951
Tumor
-1.6
978
Normal
-1.6
445
Tumor
-1.6
917
Tumor
-1.7
277
Tumor
-1.7
227
Tumor
-1.7
671
Tumor
-1.7
515
Tumor
-1.7
557
Tumor
-1.8
913
Tumor
-1.8
526
Normal
-1.8
493
Tumor
-1.8
777
Tumor
-1.9
481
Tumor
-1.9
267
Tumor
-1.9
327
Tumor
-2.0
635
Tumor
-2.1
513
Tumor
-2.1
473
Tumor
-2.1
1031
Tumor
-2.1
361
Tumor
-2.1
937
Tumor
-2.2
977
Tumor
-2.2
523
Tumor
-2.2
955
Tumor
-2.3
965
Tumor
-2.3
443
Tumor
-2.3
981
Tumor
-2.4
357
Tumor
-2.5
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
