We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
0.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.1
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
0.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
0.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
0.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.0
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
0.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
0.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
0.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
0.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.0
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.2
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
0.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
0.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
0.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
0.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
0.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
0.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
0.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
0.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1016
Normal
4.5
982
Normal
4.4
1015
Tumor
3.9
477
Tumor
1.3
427
Tumor
1.3
228
Normal
1.1
161
Tumor
1.0
744
Normal
0.9
513
Tumor
0.8
913
Tumor
0.8
925
Tumor
0.8
387
Tumor
0.8
473
Tumor
0.7
917
Tumor
0.7
111
Normal
0.7
777
Tumor
0.6
755
Tumor
0.5
922
Normal
0.5
286
Normal
0.5
483
Tumor
0.5
285
Tumor
0.5
813
Tumor
0.5
128
Normal
0.5
126
Normal
0.5
415
Tumor
0.5
563
Tumor
0.5
1027
Tumor
0.5
926
Normal
0.5
355
Tumor
0.4
918
Normal
0.4
983
Tumor
0.4
421
Tumor
0.4
388
Normal
0.4
185
Tumor
0.4
728
Normal
0.3
723
Tumor
0.3
114
Normal
0.3
785
Tumor
0.3
516
Normal
0.3
224
Normal
0.3
124
Normal
0.3
742
Normal
0.3
518
Normal
0.2
451
Tumor
0.2
526
Normal
0.2
467
Tumor
0.2
146
Normal
0.2
745
Tumor
0.2
738
Normal
0.2
491
Tumor
0.1
356
Normal
0.1
514
Normal
0.1
132
Normal
0.1
392
Normal
0.1
857
Tumor
0.1
394
Normal
0.0
461
Tumor
0.0
142
Normal
0.0
147
Tumor
0.0
411
Tumor
0.0
524
Normal
0.0
964
Normal
0.0
515
Tumor
0.0
1026
Normal
0.0
525
Tumor
0.0
413
Tumor
0.0
138
Normal
0.0
268
Normal
0.0
567
Tumor
0.0
423
Tumor
0.0
327
Tumor
0.0
923
Tumor
-0.1
814
Normal
-0.1
911
Tumor
-0.1
976
Normal
-0.1
393
Tumor
-0.1
883
Tumor
-0.1
746
Normal
-0.1
445
Tumor
-0.1
328
Normal
-0.1
493
Tumor
-0.1
564
Normal
-0.1
412
Normal
-0.1
462
Normal
-0.2
981
Tumor
-0.2
187
Tumor
-0.2
272
Normal
-0.2
574
Normal
-0.2
396
Normal
-0.2
924
Normal
-0.2
568
Normal
-0.2
471
Tumor
-0.2
172
Normal
-0.2
778
Normal
-0.2
546
Normal
-0.2
554
Normal
-0.2
571
Tumor
-0.2
558
Normal
-0.3
492
Normal
-0.3
498
Normal
-0.3
386
Normal
-0.3
537
Tumor
-0.3
364
Normal
-0.3
534
Normal
-0.3
527
Tumor
-0.3
465
Tumor
-0.3
395
Tumor
-0.3
474
Normal
-0.3
1042
Normal
-0.3
741
Tumor
-0.3
145
Tumor
-0.3
1022
Normal
-0.3
1028
Normal
-0.3
528
Normal
-0.3
557
Tumor
-0.4
212
Normal
-0.4
915
Tumor
-0.4
517
Tumor
-0.4
232
Normal
-0.4
1021
Tumor
-0.4
414
Normal
-0.4
416
Normal
-0.4
494
Normal
-0.4
858
Normal
-0.4
497
Tumor
-0.4
663
Tumor
-0.4
425
Tumor
-0.4
1032
Normal
-0.4
573
Tumor
-0.4
665
Tumor
-0.4
914
Normal
-0.4
435
Tumor
-0.4
786
Normal
-0.4
572
Normal
-0.4
391
Tumor
-0.5
436
Normal
-0.5
953
Tumor
-0.5
171
Tumor
-0.5
966
Normal
-0.5
466
Normal
-0.5
538
Normal
-0.5
112
Tumor
-0.5
916
Normal
-0.5
424
Normal
-0.5
1041
Tumor
-0.5
472
Normal
-0.5
882
Normal
-0.5
615
Tumor
-0.5
956
Normal
-0.5
1031
Tumor
-0.5
136
Normal
-0.5
963
Tumor
-0.5
488
Normal
-0.5
188
Normal
-0.6
944
Normal
-0.6
958
Normal
-0.6
468
Normal
-0.6
363
Tumor
-0.6
672
Normal
-0.6
618
Normal
-0.6
422
Normal
-0.6
484
Normal
-0.6
553
Tumor
-0.6
455
Tumor
-0.6
756
Normal
-0.6
464
Normal
-0.6
523
Tumor
-0.6
478
Normal
-0.6
162
Normal
-0.6
968
Normal
-0.6
635
Tumor
-0.6
545
Tumor
-0.6
258
Normal
-0.6
952
Normal
-0.6
428
Normal
-0.7
1025
Tumor
-0.7
617
Tumor
-0.7
433
Tumor
-0.7
533
Tumor
-0.7
951
Tumor
-0.7
463
Tumor
-0.7
426
Normal
-0.7
737
Tumor
-0.7
113
Tumor
-0.7
1013
Tumor
-0.7
978
Normal
-0.7
627
Tumor
-0.8
271
Tumor
-0.8
284
Normal
-0.8
642
Normal
-0.8
482
Normal
-0.8
481
Tumor
-0.8
262
Normal
-0.8
727
Tumor
-0.8
456
Normal
-0.8
873
Tumor
-0.8
431
Tumor
-0.8
127
Tumor
-0.8
954
Normal
-0.8
261
Tumor
-0.9
186
Normal
-0.9
137
Tumor
-0.9
487
Tumor
-0.9
628
Normal
-0.9
636
Normal
-0.9
641
Tumor
-0.9
148
Normal
-0.9
141
Tumor
-0.9
817
Tumor
-0.9
267
Tumor
-0.9
283
Tumor
-0.9
874
Normal
-0.9
975
Tumor
-0.9
661
Tumor
-1.0
881
Tumor
-1.0
984
Normal
-1.0
227
Tumor
-1.0
884
Normal
-1.0
452
Normal
-1.0
662
Normal
-1.0
616
Normal
-1.0
231
Tumor
-1.0
943
Tumor
-1.0
1014
Normal
-1.0
385
Tumor
-1.0
957
Tumor
-1.0
864
Normal
-1.0
965
Tumor
-1.0
865
Tumor
-1.0
125
Tumor
-1.0
878
Normal
-1.1
955
Tumor
-1.1
921
Tumor
-1.1
824
Normal
-1.1
867
Tumor
-1.1
666
Normal
-1.1
434
Normal
-1.2
866
Normal
-1.2
818
Normal
-1.2
937
Tumor
-1.2
664
Normal
-1.2
912
Normal
-1.2
938
Normal
-1.3
851
Tumor
-1.3
223
Tumor
-1.3
967
Tumor
-1.3
257
Tumor
-1.4
877
Tumor
-1.4
446
Normal
-1.4
861
Tumor
-1.4
823
Tumor
-1.5
815
Tumor
-1.5
671
Tumor
-1.6
135
Tumor
-1.6
868
Normal
-1.7
432
Normal
-1.7
211
Tumor
-1.7
648
Normal
-1.8
443
Tumor
-1.8
816
Normal
-1.8
852
Normal
-1.9
862
Normal
-1.9
123
Tumor
-1.9
131
Tumor
-1.9
743
Tumor
-2.0
647
Tumor
-2.2
863
Tumor
-2.2
444
Normal
-2.3
724
Normal
-2.4
977
Tumor
-4.2
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
535
Tumor
N/A
536
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
447
Tumor
N/A
448
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
213
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
341
Tumor
N/A
221
Tumor
N/A
342
Normal
N/A
222
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
