MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.2 nTPM
HPA Brain:5.4 nTPM
GTEx:1.2 nTPM
FANTOM5:0.1 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:20.1 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 5.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.6
2219 Male, age 76, both hemispheres 7.5
2019 Male, age 18, unknown 5.7
1827 Male, age 72, unknown 5.0
2411 Female, age 72, unknown 2.9
1830 Male, age 51, unknown 2.8
2666 Male, age 74, left hemisphere 2.6
1870 Female, age 42, unknown 2.5
2828 Female, age 72, unknown 2.5
1833 Male, age 53, unknown 2.4
2586 Male, age 75, left hemisphere 2.3
Dorsal raphe nucleus
nTPM: 3.7
2298 Female, age 72, unknown 5.5
2750 Male, age 76, both hemispheres 3.7
2047 Male, age 72, unknown 3.5
1828 Male, age 53, unknown 3.4
2016 Female, age 72, unknown 2.4
Inferior colliculus
nTPM: 5.2
2097 Female, age 72, unknown 7.2
1890 Male, age 53, unknown 6.0
2849 Male, age 72, unknown 4.3
1848 Female, age 42, unknown 3.3
Median raphe nucleus
nTPM: 4.3
2220 Male, age 76, midline 4.3
Periaquaductal grey, anterior
nTPM: 2.8
2502 Female, age 75, unknown 4.0
1795 Male, age 51, unknown 2.8
1947 Male, age 18, unknown 1.4
Periaquaductal grey, dorsal
nTPM: 3.4
2464 Female, age 72, unknown 4.0
1840 Male, age 53, unknown 3.7
1831 Male, age 72, unknown 3.2
2850 Male, age 76, both hemispheres 2.5
Periaquaductal grey, lateral
nTPM: 2.4
2140 Male, age 76, both hemispheres 3.0
2053 Male, age 18, unknown 2.2
2272 Male, age 74, both hemispheres 2.0
Pretectal area
nTPM: 5.4
2007 Male, age 72, unknown 10.8
1817 Female, age 42, unknown 10.0
1815 Male, age 53, unknown 9.0
1944 Female, age 72, unknown 6.7
1816 Male, age 51, unknown 6.0
2224 Female, age 72, unknown 3.7
2825 Male, age 18, unknown 2.9
2316 Male, age 76, right hemisphere 2.7
2407 Male, age 75, both hemispheres 2.7
2667 Female, age 75, unknown 2.6
2273 Male, age 74, both hemispheres 2.3
Red nucleus
nTPM: 1.5
2785 Male, age 18, unknown 5.0
2725 Female, age 75, unknown 2.4
2588 Male, age 74, left hemisphere 2.3
2584 Male, age 75, left hemisphere 1.5
1904 Male, age 53, unknown 1.2
1821 Female, age 72, unknown 1.0
2769 Male, age 72, unknown 1.0
2823 Male, age 76, right hemisphere 1.0
2227 Male, age 72, unknown 0.8
1865 Male, age 51, unknown 0.6
2503 Female, age 72, unknown 0.6
1954 Female, age 42, unknown 0.2
Substantia nigra
nTPM: 4.7
1916 Female, age 42, unknown 9.5
1889 Female, age 72, unknown 8.4
2409 Female, age 72, unknown 7.1
1851 Male, age 51, unknown 5.1
1941 Male, age 53, unknown 4.5
2241 Male, age 72, unknown 3.2
2665 Male, age 74, both hemispheres 3.2
2583 Male, age 75, right hemisphere 2.5
2699 Male, age 18, unknown 2.3
2590 Female, age 75, unknown 1.6
Superior colliculus
nTPM: 3.6
2668 Female, age 75, unknown 5.6
1895 Male, age 76, right hemisphere 5.3
2087 Female, age 72, unknown 5.2
1796 Male, age 53, unknown 3.9
1839 Male, age 51, unknown 3.6
2587 Male, age 74, left hemisphere 3.0
2261 Male, age 18, unknown 2.9
1995 Male, age 72, unknown 2.3
2664 Male, age 75, both hemispheres 2.3
1913 Female, age 42, unknown 1.8
Ventral tegmental area
nTPM: 3.6
2410 Female, age 72, unknown 6.4
2218 Male, age 76, both hemispheres 5.3
1915 Female, age 42, unknown 4.0
1942 Male, age 51, unknown 3.2
2223 Female, age 72, unknown 1.7
2021 Male, age 53, unknown 1.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 1.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.2
Samples: 139

Max nTPM: 7.3
Min nTPM: 0.0
Std nTPM: 1.3
Median nTPM: 0.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 7.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 6.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 5.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 5.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 5.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 4.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 3.8
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 3.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 3.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 3.7
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 3.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 0.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 0.1
FF:10158-103A5 76 years, female 0.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 16.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.3
Samples: 4

Max nTPM: 7.6
Min nTPM: 1.3
Sample A Female 7.6
Sample B Female 3.0
Sample C Male 5.3
Sample D Male 1.3
Midbrain
nTPM: 15.0
Samples: 4

Max nTPM: 37.3
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 8.1
Sample C Male 37.3
Sample D Male 12.8
Periaqueductal gray
nTPM: 6.9
Samples: 3

Max nTPM: 8.4
Min nTPM: 5.9
Sample B Female 8.4
Sample C Male 6.4
Sample D Male 5.9
Superior colliculi
nTPM: 16.0
Samples: 4

Max nTPM: 32.3
Min nTPM: 9.5
Sample A Female 9.5
Sample B Female 11.5
Sample C Male 32.3
Sample D Male 10.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 20.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.1
Samples: 4

Max nTPM: 21.8
Min nTPM: 18.8
Sample A Male 19.5
Sample B Male 20.2
Sample C Female 21.8
Sample D Female 18.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
74882147 Antisense, RP_060315_04_E01, Mouse strain C57BL/6J (56 days, male) 2.4
69863297 Antisense, RP_050426_02_H05, Mouse strain C57BL/6J (56 days, male) 1.8

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