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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BHLHE40 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
45.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
345.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
227.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
206.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
194.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
182.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
176.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
171.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
170.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
167.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
162.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
141.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
141.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
137.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
135.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
135.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
134.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
134.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
124.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
121.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
121.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
120.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
117.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
117.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
116.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
115.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
113.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
112.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
110.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
109.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
107.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
106.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
102.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
102.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
102.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
100.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
92.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
91.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
90.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
90.3
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
89.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
89.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
87.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
87.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
85.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
84.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
82.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
82.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
82.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
82.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
81.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
77.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
76.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
76.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
75.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
75.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
73.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
72.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
71.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
71.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
70.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
67.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
67.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
67.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
67.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
66.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
66.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
66.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
66.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
66.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
66.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
65.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
64.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
64.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
64.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
64.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
63.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
62.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
61.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
61.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
61.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
61.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
60.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
60.1
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
59.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
58.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
57.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
57.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
55.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
54.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
54.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
54.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
54.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
54.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
54.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
54.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
54.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
53.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
53.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
52.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
52.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
52.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
52.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
52.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
51.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
51.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
51.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
51.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
51.0
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
50.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
50.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
50.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
49.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
49.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
49.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
49.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
49.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
49.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
49.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
48.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
47.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
47.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
46.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
46.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
46.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
46.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
45.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
45.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
45.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
44.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
44.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
44.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
43.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
43.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
43.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
43.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
42.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
42.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
41.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
41.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
41.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
40.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
40.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
40.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
40.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
40.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
40.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
40.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
40.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
39.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
39.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
39.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
39.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
38.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
38.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
38.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
38.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
38.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
38.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
38.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
38.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
37.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
37.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
37.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
36.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
36.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
36.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
36.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
36.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
36.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
36.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
36.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
36.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
35.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
35.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
35.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
35.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
35.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
35.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
34.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
34.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
34.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
34.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
34.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
34.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
34.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
33.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
33.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
33.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
33.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
33.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
33.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
33.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
32.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
32.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
32.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
32.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
32.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
31.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
31.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
31.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
30.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
30.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
29.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
29.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
29.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
28.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
28.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
28.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
28.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
28.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
27.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
27.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
27.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
27.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
27.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
27.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
27.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
27.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
26.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
26.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
26.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
26.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
26.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
26.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
26.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
26.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
26.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
25.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
25.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
25.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
25.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
24.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
24.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
23.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
23.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
23.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
23.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
22.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
22.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
22.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
22.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
22.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
22.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
21.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.7
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
21.5
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
21.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
20.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
20.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
19.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
19.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
19.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
19.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
19.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
18.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
18.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
16.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
16.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
15.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
15.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
14.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.7
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
14.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
14.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
14.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
13.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
13.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
13.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
12.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
12.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
11.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
11.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
11.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
10.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
9.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
9.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
8.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
4.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
BHLHE40 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
87.8
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
482.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
410.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
399.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
376.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
364.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
297.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
294.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
264.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
239.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
230.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
206.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
200.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
199.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
196.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
194.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
191.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
188.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
186.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
180.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
179.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
179.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
178.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
177.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
177.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
176.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
170.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
170.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
167.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
165.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
163.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
161.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
156.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
152.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
152.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
144.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
138.6
DO45141
0 years, male, NA, stage:2, alive, 1320 days
138.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
135.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
135.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
135.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
133.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
131.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
131.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
130.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
130.4
DO50845
0 years, male, NA, stage:3, alive, 210 days
130.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
128.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
125.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
124.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
123.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
123.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
122.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
119.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
118.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
117.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
116.4
DO48733
0 years, male, NA, stage:2, alive, 600 days
112.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
110.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
109.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
109.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
108.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
108.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
106.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
104.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
104.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
103.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
103.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
102.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
102.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
101.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
100.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
100.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
99.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
98.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
98.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
97.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
97.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
96.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
96.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
94.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
93.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
93.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
93.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
92.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
88.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
87.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
86.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
85.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
85.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
84.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
84.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
83.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
83.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
82.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
81.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
81.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
80.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
78.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
77.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
77.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
77.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
75.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
75.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
73.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
73.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
71.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
70.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
69.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
69.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
68.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
67.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
67.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
67.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
66.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
66.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
66.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
65.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
65.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
65.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
64.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
64.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
64.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
63.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
62.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
62.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
62.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
61.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
61.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
59.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
59.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
59.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
58.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
58.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
58.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
58.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
57.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
57.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
56.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
55.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
54.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
54.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
53.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
53.9
DO23512
0 years, male, NA, stage:1, alive, 1260 days
53.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
53.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
53.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
52.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
51.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
51.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
51.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
51.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
50.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
49.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
49.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
48.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
48.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
48.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
47.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
47.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
46.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
46.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
45.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
45.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
44.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
42.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
41.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
41.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
41.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
41.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
40.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
39.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
38.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
37.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
37.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
37.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
36.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
35.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
35.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
35.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
34.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
34.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
34.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
34.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
34.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
33.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
33.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
32.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
31.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
31.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
31.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
30.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
30.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
30.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
30.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
30.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
30.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
28.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
28.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
27.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
27.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
25.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
24.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
24.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
24.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
22.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
21.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.6
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
18.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
17.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
16.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
12.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
9.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
8.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
1.1
663
Tumor
1.0
671
Tumor
1.0
491
Tumor
0.9
311
Tumor
0.9
498
Normal
0.9
494
Normal
0.8
537
Tumor
0.8
713
Tumor
0.8
984
Normal
0.7
813
Tumor
0.7
313
Tumor
0.7
527
Tumor
0.6
777
Tumor
0.6
863
Tumor
0.6
737
Tumor
0.6
685
Tumor
0.6
944
Normal
0.5
298
Normal
0.5
553
Tumor
0.5
814
Normal
0.5
492
Normal
0.5
964
Normal
0.5
312
Normal
0.5
982
Normal
0.5
278
Normal
0.5
314
Normal
0.5
331
Tumor
0.5
786
Normal
0.4
1015
Tumor
0.4
672
Normal
0.4
785
Tumor
0.4
484
Normal
0.4
976
Normal
0.4
666
Normal
0.4
953
Tumor
0.4
332
Normal
0.4
297
Tumor
0.4
487
Tumor
0.3
983
Tumor
0.3
277
Tumor
0.3
744
Normal
0.3
533
Tumor
0.3
1014
Normal
0.3
1016
Normal
0.3
756
Normal
0.3
721
Tumor
0.3
943
Tumor
0.2
493
Tumor
0.2
488
Normal
0.2
662
Normal
0.2
977
Tumor
0.2
954
Normal
0.2
483
Tumor
0.2
938
Normal
0.2
958
Normal
0.2
937
Tumor
0.2
956
Normal
0.2
968
Normal
0.1
957
Tumor
0.1
545
Tumor
0.1
955
Tumor
0.1
665
Tumor
0.1
268
Normal
0.1
864
Normal
0.1
862
Normal
0.1
648
Normal
0.1
865
Tumor
0.1
755
Tumor
0.1
686
Normal
0.1
262
Normal
0.1
722
Normal
0.0
661
Tumor
0.0
866
Normal
0.0
978
Normal
0.0
716
Normal
0.0
746
Normal
0.0
723
Tumor
0.0
952
Normal
0.0
741
Tumor
0.0
867
Tumor
0.0
873
Tumor
0.0
257
Tumor
0.0
695
Tumor
0.0
534
Normal
0.0
874
Normal
0.0
868
Normal
-0.1
546
Normal
-0.1
975
Tumor
-0.1
778
Normal
-0.1
664
Normal
-0.1
696
Normal
-0.1
951
Tumor
-0.1
743
Tumor
-0.1
724
Normal
-0.1
272
Normal
-0.1
728
Normal
-0.1
231
Tumor
-0.1
271
Tumor
-0.1
742
Normal
-0.2
981
Tumor
-0.2
727
Tumor
-0.2
538
Normal
-0.2
745
Tumor
-0.2
963
Tumor
-0.2
258
Normal
-0.3
966
Normal
-0.3
554
Normal
-0.3
232
Normal
-0.3
861
Tumor
-0.3
267
Tumor
-0.3
1013
Tumor
-0.4
647
Tumor
-0.4
528
Normal
-0.4
738
Normal
-0.4
715
Tumor
-0.4
714
Normal
-0.4
967
Tumor
-0.4
261
Tumor
-0.6
965
Tumor
-0.8
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
141
Tumor
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
388
Normal
N/A
147
Tumor
N/A
148
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
392
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
615
Tumor
N/A
857
Tumor
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
574
Normal
N/A
212
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
