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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VHL is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
38.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
28.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
26.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
26.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
24.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
24.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
23.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
23.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
22.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
21.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
21.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
21.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
21.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
21.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
21.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
20.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
20.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
19.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
19.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
19.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
19.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
17.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
17.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
17.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
16.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
16.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
16.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
16.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
16.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
16.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
15.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
15.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
15.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
14.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
14.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
14.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
14.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
14.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
14.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
13.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
13.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
13.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
13.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
12.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
12.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
12.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.9
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
11.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
11.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
11.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
11.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
11.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
11.1
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
11.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
11.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
11.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.7
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
10.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
10.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.5
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
10.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
9.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
9.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
9.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
9.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
9.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
9.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
8.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
8.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
8.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
8.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
8.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
8.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
8.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
7.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
7.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
7.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
7.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
6.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
6.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
6.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.2
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
5.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
5.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
5.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
5.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
4.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
4.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
3.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
3.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
VHL is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
41.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
36.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
30.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
29.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
24.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
21.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
20.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
20.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
20.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
20.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
19.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
19.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
17.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
17.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
16.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
16.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
16.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
16.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
16.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
16.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
15.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
15.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
14.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
12.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
12.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
12.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
12.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
12.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
11.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
11.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
11.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
11.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
11.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
10.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
10.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
10.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
10.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
9.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
9.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
9.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
9.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
9.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
9.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
8.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
8.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
8.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
7.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
7.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
7.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.7
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
6.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
6.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
5.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
5.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
4.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
4.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
558
Normal
1.1
563
Tumor
1.0
913
Tumor
1.0
572
Normal
0.9
564
Normal
0.9
568
Normal
0.8
883
Tumor
0.8
353
Tumor
0.8
341
Tumor
0.8
538
Normal
0.7
537
Tumor
0.6
884
Normal
0.6
545
Tumor
0.6
911
Tumor
0.6
477
Tumor
0.6
881
Tumor
0.6
351
Tumor
0.5
878
Normal
0.5
354
Normal
0.5
517
Tumor
0.5
573
Tumor
0.5
352
Normal
0.5
965
Tumor
0.5
574
Normal
0.5
571
Tumor
0.5
516
Normal
0.5
912
Normal
0.4
344
Normal
0.4
525
Tumor
0.4
553
Tumor
0.4
435
Tumor
0.4
554
Normal
0.4
515
Tumor
0.3
975
Tumor
0.3
473
Tumor
0.3
862
Normal
0.3
567
Tumor
0.3
518
Normal
0.3
483
Tumor
0.3
523
Tumor
0.3
813
Tumor
0.3
358
Normal
0.2
873
Tumor
0.2
755
Tumor
0.2
866
Normal
0.2
497
Tumor
0.2
527
Tumor
0.2
436
Normal
0.2
877
Tumor
0.2
343
Tumor
0.2
882
Normal
0.2
546
Normal
0.2
728
Normal
0.2
963
Tumor
0.2
957
Tumor
0.2
724
Normal
0.2
342
Normal
0.2
864
Normal
0.2
534
Normal
0.2
867
Tumor
0.1
196
Normal
0.1
924
Normal
0.1
967
Tumor
0.1
357
Tumor
0.1
526
Normal
0.1
814
Normal
0.1
195
Tumor
0.1
513
Tumor
0.1
524
Normal
0.1
745
Tumor
0.1
922
Normal
0.1
968
Normal
0.1
493
Tumor
0.1
514
Normal
0.1
737
Tumor
0.1
482
Normal
0.1
966
Normal
0.1
723
Tumor
0.0
491
Tumor
0.0
432
Normal
0.0
976
Normal
0.0
742
Normal
0.0
741
Tumor
0.0
487
Tumor
0.0
492
Normal
0.0
868
Normal
0.0
472
Normal
0.0
474
Normal
0.0
446
Normal
0.0
958
Normal
0.0
471
Tumor
0.0
478
Normal
0.0
918
Normal
0.0
221
Tumor
0.0
863
Tumor
-0.1
462
Normal
-0.1
461
Tumor
-0.1
914
Normal
-0.1
434
Normal
-0.1
433
Tumor
-0.1
217
Tumor
-0.1
191
Tumor
-0.1
213
Tumor
-0.1
874
Normal
-0.1
481
Tumor
-0.1
786
Normal
-0.1
744
Normal
-0.1
923
Tumor
-0.1
444
Normal
-0.2
528
Normal
-0.2
445
Tumor
-0.2
743
Tumor
-0.2
727
Tumor
-0.2
738
Normal
-0.2
921
Tumor
-0.2
214
Normal
-0.2
431
Tumor
-0.2
498
Normal
-0.2
484
Normal
-0.2
861
Tumor
-0.2
865
Tumor
-0.2
533
Tumor
-0.2
964
Normal
-0.2
785
Tumor
-0.3
916
Normal
-0.3
926
Normal
-0.3
222
Normal
-0.3
777
Tumor
-0.3
192
Normal
-0.3
778
Normal
-0.3
218
Normal
-0.3
494
Normal
-0.3
915
Tumor
-0.3
756
Normal
-0.4
557
Tumor
-0.4
925
Tumor
-0.4
443
Tumor
-0.4
488
Normal
-0.5
746
Normal
-0.5
917
Tumor
-0.6
231
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
361
Tumor
N/A
362
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
125
Tumor
N/A
367
Tumor
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
722
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
858
Normal
N/A
617
Tumor
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
1045
Tumor
N/A
627
Tumor
N/A
628
Normal
N/A
635
Tumor
N/A
636
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
647
Tumor
N/A
648
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
423
Tumor
N/A
665
Tumor
N/A
424
Normal
N/A
666
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
451
Tumor
N/A
331
Tumor
N/A
452
Normal
N/A
211
Tumor
N/A
332
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
455
Tumor
N/A
697
Tumor
N/A
456
Normal
N/A
698
Normal
N/A
463
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
