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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCNB1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
135.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
123.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
105.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
74.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
72.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
71.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
70.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
70.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
68.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
66.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
65.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
65.4
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
65.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
62.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
62.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
62.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
62.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
61.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
60.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
60.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
56.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
56.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
54.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
53.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
51.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
50.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
50.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
48.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
47.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
46.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
45.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
44.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
42.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
42.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
41.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
40.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
40.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
39.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
38.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
38.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
38.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
35.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
35.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
34.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
34.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
34.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
34.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
32.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
32.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
32.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
32.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
31.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
31.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
31.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
31.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
31.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
29.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
29.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
28.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
27.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
27.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
26.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
26.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
25.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
25.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
24.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
24.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
24.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
24.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
24.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
24.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
23.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
23.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
23.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
22.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
22.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
22.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
22.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.6
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
21.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
21.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
21.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
21.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
20.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
20.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
19.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
19.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.8
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
18.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
18.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
18.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
18.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
18.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
17.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
17.8
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
17.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
17.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
15.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
15.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
15.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
15.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
14.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
14.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.7
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
12.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
12.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
12.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
12.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
11.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
10.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
10.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
10.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
10.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.8
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
9.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
9.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
9.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
9.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
8.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
8.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
8.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
7.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
7.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
6.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
6.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
6.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
6.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
5.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
5.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
5.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
5.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
4.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
4.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
4.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
4.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
4.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
4.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
3.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
3.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
2.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
2.9
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
2.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
1.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.6
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
1.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CCNB1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.5
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
61.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
60.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
50.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
40.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
38.1
DO50815
0 years, male, NA, stage:3, alive, 150 days
36.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
35.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
35.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
34.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
34.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
33.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
33.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
31.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
30.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
30.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
29.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
29.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
29.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
27.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
27.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
25.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
24.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
24.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
22.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
22.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
21.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
20.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
20.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
19.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
19.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
19.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
18.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
18.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
18.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
17.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
17.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
16.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
16.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
15.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
14.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
13.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
11.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
11.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
11.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
11.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
10.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
10.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.6
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.3
DO23510
0 years, female, NA, stage:2, alive, 870 days
10.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
10.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
10.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
10.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
9.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
9.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
9.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
9.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
9.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
8.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
8.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
7.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
7.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
6.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
5.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
4.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
4.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
4.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
3.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
3.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
3.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
3.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
3.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
3.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
2.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
2.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
1.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
1.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
1.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
1.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
463
Tumor
2.4
351
Tumor
2.0
123
Tumor
1.9
951
Tumor
1.8
641
Tumor
1.8
661
Tumor
1.8
627
Tumor
1.8
635
Tumor
1.8
367
Tumor
1.7
285
Tumor
1.6
965
Tumor
1.6
218
Normal
1.5
191
Tumor
1.5
616
Normal
1.4
192
Normal
1.4
195
Tumor
1.4
636
Normal
1.4
523
Tumor
1.4
161
Tumor
1.3
385
Tumor
1.3
213
Tumor
1.3
618
Normal
1.3
222
Normal
1.3
267
Tumor
1.3
537
Tumor
1.3
525
Tumor
1.2
214
Normal
1.2
663
Tumor
1.2
564
Normal
1.2
925
Tumor
1.2
563
Tumor
1.2
628
Normal
1.2
497
Tumor
1.1
221
Tumor
1.1
558
Normal
1.1
572
Normal
1.1
196
Normal
1.1
217
Tumor
1.1
617
Tumor
1.1
615
Tumor
1.0
375
Tumor
1.0
283
Tumor
1.0
567
Tumor
1.0
574
Normal
0.9
665
Tumor
0.9
642
Normal
0.9
983
Tumor
0.9
387
Tumor
0.9
427
Tumor
0.9
388
Normal
0.9
361
Tumor
0.9
568
Normal
0.8
571
Tumor
0.8
428
Normal
0.8
386
Normal
0.8
211
Tumor
0.8
383
Tumor
0.8
647
Tumor
0.8
231
Tumor
0.8
877
Tumor
0.8
671
Tumor
0.8
557
Tumor
0.8
423
Tumor
0.8
421
Tumor
0.7
413
Tumor
0.7
365
Tumor
0.7
435
Tumor
0.7
414
Normal
0.7
573
Tumor
0.7
268
Normal
0.7
343
Tumor
0.7
426
Normal
0.6
1013
Tumor
0.6
737
Tumor
0.6
943
Tumor
0.6
493
Tumor
0.6
396
Normal
0.6
394
Normal
0.6
424
Normal
0.5
727
Tumor
0.5
257
Tumor
0.5
395
Tumor
0.5
227
Tumor
0.5
357
Tumor
0.5
724
Normal
0.5
743
Tumor
0.5
698
Normal
0.5
517
Tumor
0.5
341
Tumor
0.5
422
Normal
0.5
258
Normal
0.4
391
Tumor
0.4
272
Normal
0.4
271
Tumor
0.4
487
Tumor
0.4
392
Normal
0.4
967
Tumor
0.3
527
Tumor
0.3
262
Normal
0.3
1027
Tumor
0.3
171
Tumor
0.3
432
Normal
0.3
393
Tumor
0.3
232
Normal
0.3
957
Tumor
0.3
443
Tumor
0.3
741
Tumor
0.3
666
Normal
0.3
535
Tumor
0.2
368
Normal
0.2
883
Tumor
0.2
937
Tumor
0.2
1044
Normal
0.2
125
Tumor
0.2
953
Tumor
0.2
362
Normal
0.2
536
Normal
0.2
915
Tumor
0.1
448
Normal
0.1
425
Tumor
0.1
1021
Tumor
0.1
384
Normal
0.1
366
Normal
0.1
1046
Normal
0.1
444
Normal
0.1
697
Tumor
0.1
436
Normal
0.0
881
Tumor
0.0
648
Normal
0.0
433
Tumor
0.0
672
Normal
0.0
376
Normal
0.0
465
Tumor
0.0
977
Tumor
0.0
352
Normal
0.0
982
Normal
0.0
353
Tumor
0.0
662
Normal
-0.1
1043
Tumor
-0.1
127
Tumor
-0.1
261
Tumor
-0.1
912
Normal
-0.1
446
Normal
-0.1
431
Tumor
-0.1
975
Tumor
-0.1
744
Normal
-0.1
742
Normal
-0.1
434
Normal
-0.1
1014
Normal
-0.1
533
Tumor
-0.1
921
Tumor
-0.1
918
Normal
-0.1
1025
Tumor
-0.1
1031
Tumor
-0.1
488
Normal
-0.1
924
Normal
-0.1
976
Normal
-0.1
922
Normal
-0.2
723
Tumor
-0.2
984
Normal
-0.2
944
Normal
-0.2
958
Normal
-0.2
447
Tumor
-0.2
1016
Normal
-0.2
926
Normal
-0.2
664
Normal
-0.2
882
Normal
-0.2
467
Tumor
-0.2
1026
Normal
-0.2
534
Normal
-0.2
491
Tumor
-0.2
978
Normal
-0.2
445
Tumor
-0.3
728
Normal
-0.3
342
Normal
-0.3
963
Tumor
-0.3
1028
Normal
-0.3
344
Normal
-0.3
498
Normal
-0.3
968
Normal
-0.3
964
Normal
-0.3
981
Tumor
-0.3
468
Normal
-0.3
483
Tumor
-0.3
484
Normal
-0.4
1042
Normal
-0.4
913
Tumor
-0.4
354
Normal
-0.4
916
Normal
-0.4
187
Tumor
-0.4
545
Tumor
-0.4
738
Normal
-0.4
455
Tumor
-0.4
1032
Normal
-0.4
1045
Tumor
-0.4
492
Normal
-0.4
966
Normal
-0.5
358
Normal
-0.5
1015
Tumor
-0.5
914
Normal
-0.5
884
Normal
-0.5
954
Normal
-0.5
878
Normal
-0.5
494
Normal
-0.5
911
Tumor
-0.5
223
Tumor
-0.6
553
Tumor
-0.6
466
Normal
-0.6
1022
Normal
-0.6
1041
Tumor
-0.6
528
Normal
-0.6
923
Tumor
-0.6
224
Normal
-0.6
956
Normal
-0.6
938
Normal
-0.7
112
Tumor
-0.7
147
Tumor
-0.7
538
Normal
-0.7
451
Tumor
-0.7
955
Tumor
-0.7
917
Tumor
-0.7
546
Normal
-0.8
185
Tumor
-0.8
952
Normal
-0.8
212
Normal
-0.8
513
Tumor
-0.8
464
Normal
-0.8
286
Normal
-0.8
228
Normal
-0.9
284
Normal
-0.9
554
Normal
-0.9
524
Normal
-0.9
113
Tumor
-0.9
526
Normal
-0.9
514
Normal
-1.0
128
Normal
-1.1
186
Normal
-1.1
516
Normal
-1.1
148
Normal
-1.1
452
Normal
-1.2
172
Normal
-1.3
515
Tumor
-1.4
188
Normal
-1.4
518
Normal
-1.4
456
Normal
-1.5
114
Normal
-1.6
111
Normal
-1.6
126
Normal
-1.9
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
124
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
817
Tumor
N/A
818
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
823
Tumor
N/A
824
Normal
N/A
277
Tumor
N/A
278
Normal
N/A
713
Tumor
N/A
714
Normal
N/A
715
Tumor
N/A
716
Normal
N/A
162
Normal
N/A
721
Tumor
N/A
722
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
857
Tumor
N/A
858
Normal
N/A
861
Tumor
N/A
862
Normal
N/A
863
Tumor
N/A
864
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
755
Tumor
N/A
756
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
777
Tumor
N/A
415
Tumor
N/A
778
Normal
N/A
416
Normal
N/A
785
Tumor
N/A
786
Normal
N/A
311
Tumor
N/A
312
Normal
N/A
313
Tumor
N/A
314
Normal
N/A
685
Tumor
N/A
686
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
695
Tumor
N/A
696
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
