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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IER3IP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
40.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
39.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
37.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
32.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
30.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
30.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.3
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
28.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
27.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
26.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
26.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
26.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
25.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
25.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
24.4
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
24.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
24.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
24.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
23.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
23.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
23.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
23.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
23.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
22.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.8
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
22.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
22.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
22.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
22.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
21.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
21.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
21.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
21.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
20.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
20.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
20.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
20.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
20.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
19.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
19.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
19.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
19.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
18.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
18.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
18.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
18.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
18.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
18.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
18.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
18.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
17.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
17.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
17.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
17.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
17.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
17.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
17.2
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
17.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
17.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
17.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
17.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
17.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
16.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
16.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
16.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
16.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
16.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
16.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
16.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
16.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
16.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
16.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
16.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
16.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
16.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
15.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
15.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.7
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
15.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
15.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
15.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.3
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
15.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
15.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
15.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
15.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
14.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
14.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
14.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
14.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
14.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
14.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
13.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
13.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
13.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
13.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
13.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
13.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
13.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
13.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
13.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
13.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
13.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
13.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
13.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
13.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
12.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
12.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
12.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
12.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
12.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
12.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
12.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
12.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
12.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
12.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
12.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
11.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
11.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
11.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
11.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
11.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
11.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
11.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
11.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
11.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
10.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
10.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
10.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
10.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
10.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
10.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
10.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
10.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
10.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
10.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
10.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
9.9
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
9.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
9.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
9.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.4
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
9.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
9.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
8.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
8.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
8.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
8.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
7.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
7.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
6.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
5.7
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
3.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IER3IP1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
38.0
Number of samples
231
Samples
Sample
Description
TPM
DO45193
0 years, female, NA, stage:4, dead, 120 days
105.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
92.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
90.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
81.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
80.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
80.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
77.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
76.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
72.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
70.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
68.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
68.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
66.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
65.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
65.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
64.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
63.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
63.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
63.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
63.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
62.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
61.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
60.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
59.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
59.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
58.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
58.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
57.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
56.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
55.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
54.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
54.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
53.5
DO45092
0 years, male, NA, stage:4, dead, 1200 days
53.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
53.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
53.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
52.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
52.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
51.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
51.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
51.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
51.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
50.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
50.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
49.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
49.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
48.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
47.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
47.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
47.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
47.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
47.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
46.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
46.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
46.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
46.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
45.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
45.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
45.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
45.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
44.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
44.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
44.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
44.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
43.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
43.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
43.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
42.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
41.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
41.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
41.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
41.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
41.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
40.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
40.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
40.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
40.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
40.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
40.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
40.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
40.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
39.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
39.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
39.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
39.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
39.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
39.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
38.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
38.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
38.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
38.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
38.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
37.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
37.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
37.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
37.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
37.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
36.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
36.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
36.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
36.0
DO48700
0 years, female, NA, stage:2, alive, 810 days
35.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
35.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
35.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
35.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
35.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
35.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
34.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
34.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
34.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
34.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
33.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
33.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
33.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
33.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
33.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
33.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
33.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
33.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
33.1
DO45157
0 years, male, NA, stage:2, alive, 1980 days
33.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
32.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
32.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
32.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
32.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
32.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
32.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
32.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
31.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
31.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
31.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
31.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
31.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
31.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
30.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
30.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
30.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
30.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
29.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
29.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
29.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
29.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
29.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
29.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
29.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
28.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.9
DO45093
0 years, male, NA, stage:2, dead, 720 days
28.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
28.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
28.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
28.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
28.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
28.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
28.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
27.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
27.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
27.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
27.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
27.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
27.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
27.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
26.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
26.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
26.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
26.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
26.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
26.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
26.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
26.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
25.9
DO50800
0 years, male, NA, stage:2, alive, 510 days
25.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
25.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
25.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
25.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
25.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
25.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
24.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
24.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
24.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
24.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
23.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
23.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
23.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
23.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
23.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
23.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
23.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
22.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
22.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
22.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
21.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
21.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
21.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
21.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
20.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
19.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
18.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
17.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
12.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
123
Tumor
1.1
615
Tumor
0.9
257
Tumor
0.8
527
Tumor
0.8
351
Tumor
0.7
341
Tumor
0.7
665
Tumor
0.7
635
Tumor
0.6
383
Tumor
0.6
231
Tumor
0.6
258
Normal
0.6
642
Normal
0.5
232
Normal
0.5
268
Normal
0.5
481
Tumor
0.5
627
Tumor
0.5
925
Tumor
0.5
262
Normal
0.5
387
Tumor
0.5
271
Tumor
0.5
272
Normal
0.5
636
Normal
0.5
724
Normal
0.5
327
Tumor
0.5
171
Tumor
0.5
267
Tumor
0.5
285
Tumor
0.5
553
Tumor
0.5
135
Tumor
0.5
863
Tumor
0.5
741
Tumor
0.5
332
Normal
0.4
451
Tumor
0.4
342
Normal
0.4
331
Tumor
0.4
981
Tumor
0.4
435
Tumor
0.4
113
Tumor
0.4
744
Normal
0.4
915
Tumor
0.4
618
Normal
0.4
261
Tumor
0.4
1013
Tumor
0.4
443
Tumor
0.4
278
Normal
0.4
385
Tumor
0.3
661
Tumor
0.3
353
Tumor
0.3
137
Tumor
0.3
617
Tumor
0.3
124
Normal
0.3
647
Tumor
0.3
112
Tumor
0.3
132
Normal
0.3
356
Normal
0.3
415
Tumor
0.3
1027
Tumor
0.3
344
Normal
0.3
662
Normal
0.3
727
Tumor
0.3
111
Normal
0.3
913
Tumor
0.3
433
Tumor
0.3
911
Tumor
0.3
755
Tumor
0.3
955
Tumor
0.3
314
Normal
0.3
526
Normal
0.3
114
Normal
0.2
358
Normal
0.2
138
Normal
0.2
376
Normal
0.2
161
Tumor
0.2
211
Tumor
0.2
412
Normal
0.2
363
Tumor
0.2
395
Tumor
0.2
328
Normal
0.2
963
Tumor
0.2
357
Tumor
0.2
525
Tumor
0.2
228
Normal
0.2
864
Normal
0.2
786
Normal
0.2
367
Tumor
0.2
944
Normal
0.2
534
Normal
0.2
365
Tumor
0.2
923
Tumor
0.2
354
Normal
0.2
145
Tumor
0.2
361
Tumor
0.2
976
Normal
0.2
982
Normal
0.2
298
Normal
0.2
756
Normal
0.2
722
Normal
0.2
426
Normal
0.1
352
Normal
0.1
284
Normal
0.1
416
Normal
0.1
1043
Tumor
0.1
127
Tumor
0.1
147
Tumor
0.1
313
Tumor
0.1
533
Tumor
0.1
446
Normal
0.1
125
Tumor
0.1
431
Tumor
0.1
452
Normal
0.1
368
Normal
0.1
434
Normal
0.1
572
Normal
0.1
697
Tumor
0.1
466
Normal
0.1
937
Tumor
0.1
926
Normal
0.1
391
Tumor
0.1
388
Normal
0.1
528
Normal
0.1
922
Normal
0.1
146
Normal
0.1
286
Normal
0.1
914
Normal
0.1
954
Normal
0.1
473
Tumor
0.1
1016
Normal
0.1
488
Normal
0.1
861
Tumor
0.1
384
Normal
0.1
728
Normal
0.1
223
Tumor
0.1
366
Normal
0.1
392
Normal
0.1
494
Normal
0.1
965
Tumor
0.1
422
Normal
0.1
477
Tumor
0.1
212
Normal
0.1
214
Normal
0.1
196
Normal
0.1
478
Normal
0.1
393
Tumor
0.1
696
Normal
0.1
698
Normal
0.1
554
Normal
0.1
172
Normal
0.1
514
Normal
0.1
564
Normal
0.1
518
Normal
0.0
568
Normal
0.0
517
Tumor
0.0
964
Normal
0.0
713
Tumor
0.0
128
Normal
0.0
136
Normal
0.0
664
Normal
0.0
185
Tumor
0.0
468
Normal
0.0
648
Normal
0.0
538
Normal
0.0
491
Tumor
0.0
297
Tumor
0.0
742
Normal
0.0
474
Normal
0.0
563
Tumor
0.0
1025
Tumor
0.0
952
Normal
0.0
672
Normal
0.0
141
Tumor
0.0
487
Tumor
0.0
456
Normal
0.0
966
Normal
0.0
187
Tumor
0.0
148
Normal
0.0
778
Normal
0.0
396
Normal
0.0
873
Tumor
0.0
857
Tumor
0.0
814
Normal
0.0
641
Tumor
0.0
424
Normal
0.0
277
Tumor
0.0
738
Normal
0.0
956
Normal
0.0
224
Normal
0.0
448
Normal
0.0
445
Tumor
0.0
364
Normal
0.0
467
Tumor
0.0
142
Normal
0.0
126
Normal
0.0
867
Tumor
0.0
546
Normal
0.0
436
Normal
0.0
386
Normal
0.0
343
Tumor
0.0
362
Normal
-0.1
574
Normal
-0.1
523
Tumor
-0.1
866
Normal
-0.1
918
Normal
-0.1
1045
Tumor
-0.1
628
Normal
-0.1
513
Tumor
-0.1
427
Tumor
-0.1
1021
Tumor
-0.1
723
Tumor
-0.1
1046
Normal
-0.1
817
Tumor
-0.1
462
Normal
-0.1
414
Normal
-0.1
1042
Normal
-0.1
421
Tumor
-0.1
411
Tumor
-0.1
355
Tumor
-0.1
912
Normal
-0.1
432
Normal
-0.1
878
Normal
-0.1
492
Normal
-0.1
312
Normal
-0.1
162
Normal
-0.1
535
Tumor
-0.1
394
Normal
-0.1
1028
Normal
-0.1
874
Normal
-0.1
743
Tumor
-0.1
968
Normal
-0.1
444
Normal
-0.1
1044
Normal
-0.1
745
Tumor
-0.1
967
Tumor
-0.1
721
Tumor
-0.1
714
Normal
-0.1
428
Normal
-0.1
465
Tumor
-0.1
537
Tumor
-0.1
695
Tumor
-0.1
484
Normal
-0.1
524
Normal
-0.1
493
Tumor
-0.1
715
Tumor
-0.1
497
Tumor
-0.1
777
Tumor
-0.2
881
Tumor
-0.2
1026
Normal
-0.2
813
Tumor
-0.2
924
Normal
-0.2
471
Tumor
-0.2
746
Normal
-0.2
916
Normal
-0.2
464
Normal
-0.2
222
Normal
-0.2
482
Normal
-0.2
186
Normal
-0.2
882
Normal
-0.2
573
Tumor
-0.2
218
Normal
-0.2
958
Normal
-0.2
423
Tumor
-0.2
571
Tumor
-0.2
1032
Normal
-0.2
938
Normal
-0.2
213
Tumor
-0.2
191
Tumor
-0.2
984
Normal
-0.2
716
Normal
-0.2
131
Tumor
-0.3
616
Normal
-0.3
1014
Normal
-0.3
455
Tumor
-0.3
413
Tumor
-0.3
686
Normal
-0.3
195
Tumor
-0.3
558
Normal
-0.3
498
Normal
-0.3
851
Tumor
-0.3
852
Normal
-0.3
868
Normal
-0.3
221
Tumor
-0.3
217
Tumor
-0.3
557
Tumor
-0.3
188
Normal
-0.3
472
Normal
-0.3
685
Tumor
-0.3
975
Tumor
-0.3
862
Normal
-0.3
951
Tumor
-0.3
978
Normal
-0.3
884
Normal
-0.3
921
Tumor
-0.3
516
Normal
-0.3
666
Normal
-0.4
858
Normal
-0.4
737
Tumor
-0.4
883
Tumor
-0.4
917
Tumor
-0.4
311
Tumor
-0.4
663
Tumor
-0.4
824
Normal
-0.4
461
Tumor
-0.4
671
Tumor
-0.4
447
Tumor
-0.4
1015
Tumor
-0.4
977
Tumor
-0.4
957
Tumor
-0.4
983
Tumor
-0.4
818
Normal
-0.4
515
Tumor
-0.4
227
Tumor
-0.4
816
Normal
-0.4
536
Normal
-0.4
375
Tumor
-0.4
785
Tumor
-0.5
953
Tumor
-0.5
192
Normal
-0.5
877
Tumor
-0.5
1022
Normal
-0.5
283
Tumor
-0.5
463
Tumor
-0.5
483
Tumor
-0.5
1041
Tumor
-0.5
567
Tumor
-0.5
425
Tumor
-0.6
823
Tumor
-0.6
545
Tumor
-0.6
815
Tumor
-0.7
943
Tumor
-0.7
1031
Tumor
-0.9
865
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
