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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED6 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
37.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
25.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
25.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
23.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
22.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
22.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
21.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
21.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
19.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
19.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
19.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
18.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
18.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
18.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
17.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
16.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
16.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
16.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
16.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
16.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
16.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
16.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
15.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
14.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
14.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
14.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
14.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
14.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
14.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.5
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
13.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
13.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
13.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
12.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
12.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
12.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
12.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
11.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
11.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.6
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
11.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
11.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
11.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
10.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
10.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
10.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
10.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
10.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
10.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
10.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
10.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
10.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
10.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
10.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
9.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
9.7
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
9.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
9.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
9.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.2
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
9.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
9.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
9.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
9.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
8.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
8.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
8.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.3
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
7.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
7.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
7.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
7.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
7.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
7.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
7.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
7.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
7.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
7.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
6.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.3
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
6.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
5.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.8
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
4.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MED6 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.5
Number of samples
231
Samples
Sample
Description
TPM
DO23521
0 years, male, NA, stage:3, alive, 1110 days
21.9
DO45263
0 years, male, NA, stage:3, dead, 270 days
21.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
20.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
20.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
19.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
19.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
19.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
18.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
18.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
18.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
17.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
17.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
17.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
17.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
16.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
16.3
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
15.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
15.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
15.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
14.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
14.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
14.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
13.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
13.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
13.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
12.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
12.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
12.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
12.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
12.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
12.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
12.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.5
DO48736
0 years, female, NA, stage:1, alive, 600 days
11.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
11.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
11.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.2
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.1
DO45249
0 years, male, NA, stage:1, alive, 630 days
11.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
10.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
10.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
10.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
9.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
9.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
9.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
9.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
9.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
9.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
9.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.9
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
8.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
8.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
8.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
8.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.9
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
7.7
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
7.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
7.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
6.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
6.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
6.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
5.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
5.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
5.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
131
Tumor
1.2
865
Tumor
1.2
473
Tumor
1.2
343
Tumor
1.1
357
Tumor
1.0
743
Tumor
1.0
431
Tumor
1.0
817
Tumor
1.0
497
Tumor
0.9
383
Tumor
0.9
385
Tumor
0.9
331
Tumor
0.8
443
Tumor
0.8
387
Tumor
0.8
351
Tumor
0.8
533
Tumor
0.8
943
Tumor
0.8
463
Tumor
0.8
375
Tumor
0.8
455
Tumor
0.8
411
Tumor
0.8
285
Tumor
0.8
341
Tumor
0.8
367
Tumor
0.7
467
Tumor
0.7
445
Tumor
0.7
727
Tumor
0.7
271
Tumor
0.7
777
Tumor
0.7
391
Tumor
0.7
967
Tumor
0.7
951
Tumor
0.7
451
Tumor
0.7
355
Tumor
0.7
361
Tumor
0.7
123
Tumor
0.6
434
Normal
0.6
425
Tumor
0.6
661
Tumor
0.6
433
Tumor
0.6
365
Tumor
0.6
465
Tumor
0.6
737
Tumor
0.6
386
Normal
0.6
395
Tumor
0.6
965
Tumor
0.5
814
Normal
0.5
344
Normal
0.5
471
Tumor
0.5
393
Tumor
0.5
1031
Tumor
0.5
435
Tumor
0.5
461
Tumor
0.5
384
Normal
0.5
211
Tumor
0.5
977
Tumor
0.5
815
Tumor
0.5
957
Tumor
0.5
937
Tumor
0.5
523
Tumor
0.5
813
Tumor
0.5
1021
Tumor
0.5
358
Normal
0.5
231
Tumor
0.5
125
Tumor
0.5
127
Tumor
0.5
354
Normal
0.5
823
Tumor
0.5
213
Tumor
0.5
975
Tumor
0.5
525
Tumor
0.5
785
Tumor
0.5
881
Tumor
0.5
444
Normal
0.4
427
Tumor
0.4
517
Tumor
0.4
863
Tumor
0.4
724
Normal
0.4
635
Tumor
0.4
191
Tumor
0.4
277
Tumor
0.4
477
Tumor
0.4
352
Normal
0.4
413
Tumor
0.4
392
Normal
0.4
741
Tumor
0.4
553
Tumor
0.4
396
Normal
0.4
861
Tumor
0.4
452
Normal
0.4
388
Normal
0.4
185
Tumor
0.4
221
Tumor
0.4
456
Normal
0.4
571
Tumor
0.4
641
Tumor
0.4
877
Tumor
0.4
1013
Tumor
0.3
573
Tumor
0.3
515
Tumor
0.3
493
Tumor
0.3
491
Tumor
0.3
217
Tumor
0.3
313
Tumor
0.3
432
Normal
0.3
267
Tumor
0.3
353
Tumor
0.3
537
Tumor
0.3
1025
Tumor
0.3
483
Tumor
0.3
715
Tumor
0.3
672
Normal
0.3
851
Tumor
0.3
671
Tumor
0.3
464
Normal
0.3
366
Normal
0.3
564
Normal
0.3
342
Normal
0.3
394
Normal
0.3
312
Normal
0.3
141
Tumor
0.3
513
Tumor
0.3
563
Tumor
0.3
283
Tumor
0.3
187
Tumor
0.3
755
Tumor
0.3
468
Normal
0.3
363
Tumor
0.3
446
Normal
0.3
568
Normal
0.3
112
Tumor
0.2
527
Tumor
0.2
574
Normal
0.2
983
Tumor
0.2
873
Tumor
0.2
663
Tumor
0.2
685
Tumor
0.2
857
Tumor
0.2
314
Normal
0.2
545
Tumor
0.2
332
Normal
0.2
278
Normal
0.2
257
Tumor
0.2
195
Tumor
0.2
487
Tumor
0.2
557
Tumor
0.1
362
Normal
0.1
113
Tumor
0.1
498
Normal
0.1
298
Normal
0.1
171
Tumor
0.1
695
Tumor
0.1
423
Tumor
0.1
478
Normal
0.1
744
Normal
0.1
524
Normal
0.1
756
Normal
0.1
964
Normal
0.1
913
Tumor
0.1
963
Tumor
0.1
665
Tumor
0.1
188
Normal
0.1
192
Normal
0.1
227
Tumor
0.1
567
Tumor
0.1
662
Normal
0.1
647
Tumor
0.1
953
Tumor
0.1
137
Tumor
0.1
436
Normal
0.0
976
Normal
0.0
162
Normal
0.0
161
Tumor
0.0
376
Normal
0.0
883
Tumor
0.0
911
Tumor
0.0
145
Tumor
0.0
1042
Normal
0.0
481
Tumor
0.0
135
Tumor
0.0
867
Tumor
0.0
526
Normal
0.0
124
Normal
0.0
958
Normal
0.0
778
Normal
0.0
1041
Tumor
0.0
558
Normal
0.0
484
Normal
0.0
534
Normal
0.0
917
Tumor
0.0
297
Tumor
0.0
617
Tumor
0.0
786
Normal
0.0
146
Normal
0.0
968
Normal
0.0
494
Normal
-0.1
664
Normal
-0.1
261
Tumor
-0.1
728
Normal
-0.1
415
Tumor
-0.1
447
Tumor
-0.1
713
Tumor
-0.1
696
Normal
-0.1
615
Tumor
-0.1
914
Normal
-0.1
554
Normal
-0.1
186
Normal
-0.1
745
Tumor
-0.1
1032
Normal
-0.1
172
Normal
-0.1
648
Normal
-0.1
528
Normal
-0.1
923
Tumor
-0.1
915
Tumor
-0.1
466
Normal
-0.1
926
Normal
-0.1
268
Normal
-0.1
1027
Tumor
-0.1
128
Normal
-0.1
218
Normal
-0.1
516
Normal
-0.1
627
Tumor
-0.1
412
Normal
-0.1
878
Normal
-0.2
126
Normal
-0.2
114
Normal
-0.2
1015
Tumor
-0.2
1028
Normal
-0.2
921
Tumor
-0.2
147
Tumor
-0.2
714
Normal
-0.2
111
Normal
-0.2
474
Normal
-0.2
546
Normal
-0.2
535
Tumor
-0.2
738
Normal
-0.2
311
Tumor
-0.2
472
Normal
-0.2
538
Normal
-0.2
966
Normal
-0.2
223
Tumor
-0.2
938
Normal
-0.2
482
Normal
-0.2
1026
Normal
-0.2
224
Normal
-0.2
723
Tumor
-0.2
148
Normal
-0.2
416
Normal
-0.2
368
Normal
-0.2
742
Normal
-0.2
636
Normal
-0.2
686
Normal
-0.2
874
Normal
-0.2
858
Normal
-0.2
716
Normal
-0.2
944
Normal
-0.2
572
Normal
-0.2
462
Normal
-0.3
925
Tumor
-0.3
327
Tumor
-0.3
628
Normal
-0.3
818
Normal
-0.3
824
Normal
-0.3
222
Normal
-0.3
262
Normal
-0.3
866
Normal
-0.3
981
Tumor
-0.3
421
Tumor
-0.3
955
Tumor
-0.3
864
Normal
-0.3
196
Normal
-0.3
364
Normal
-0.3
214
Normal
-0.3
272
Normal
-0.3
868
Normal
-0.3
492
Normal
-0.3
882
Normal
-0.3
488
Normal
-0.3
328
Normal
-0.3
884
Normal
-0.3
956
Normal
-0.3
136
Normal
-0.3
356
Normal
-0.3
284
Normal
-0.3
138
Normal
-0.3
142
Normal
-0.3
918
Normal
-0.3
954
Normal
-0.3
666
Normal
-0.3
952
Normal
-0.4
618
Normal
-0.4
978
Normal
-0.4
852
Normal
-0.4
922
Normal
-0.4
912
Normal
-0.4
514
Normal
-0.4
984
Normal
-0.4
721
Tumor
-0.4
924
Normal
-0.4
816
Normal
-0.4
1016
Normal
-0.4
228
Normal
-0.4
232
Normal
-0.4
212
Normal
-0.4
258
Normal
-0.4
422
Normal
-0.4
722
Normal
-0.4
916
Normal
-0.4
642
Normal
-0.4
982
Normal
-0.5
1045
Tumor
-0.5
862
Normal
-0.5
448
Normal
-0.5
426
Normal
-0.5
1014
Normal
-0.5
616
Normal
-0.5
1022
Normal
-0.5
746
Normal
-0.5
1046
Normal
-0.5
286
Normal
-0.6
1043
Tumor
-0.6
132
Normal
-0.6
536
Normal
-0.6
697
Tumor
-0.6
428
Normal
-0.6
424
Normal
-0.6
698
Normal
-0.6
1044
Normal
-0.6
518
Normal
-0.7
414
Normal
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
