MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.9 nTPM
HPA Brain:15.7 nTPM
GTEx:17.9 nTPM
FANTOM5:105.8 Scaled Tags Per Million
Pig:9.4 nTPM
Mouse:55.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 15.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.6
2019 Male, age 18, unknown 18.4
1870 Female, age 42, unknown 16.7
1827 Male, age 72, unknown 15.7
2411 Female, age 72, unknown 15.7
1830 Male, age 51, unknown 14.3
1833 Male, age 53, unknown 12.4
2666 Male, age 74, left hemisphere 11.7
2586 Male, age 75, left hemisphere 11.4
2828 Female, age 72, unknown 11.3
2219 Male, age 76, both hemispheres 8.2
Dorsal raphe nucleus
nTPM: 14.8
2298 Female, age 72, unknown 18.1
1828 Male, age 53, unknown 15.3
2750 Male, age 76, both hemispheres 14.7
2047 Male, age 72, unknown 13.1
2016 Female, age 72, unknown 12.9
Inferior colliculus
nTPM: 14.2
2097 Female, age 72, unknown 16.2
1848 Female, age 42, unknown 13.8
1890 Male, age 53, unknown 13.5
2849 Male, age 72, unknown 13.5
Median raphe nucleus
nTPM: 11.6
2220 Male, age 76, midline 11.6
Periaquaductal grey, anterior
nTPM: 12.2
2502 Female, age 75, unknown 14.7
1947 Male, age 18, unknown 13.1
1795 Male, age 51, unknown 8.7
Periaquaductal grey, dorsal
nTPM: 14.5
1840 Male, age 53, unknown 19.1
2464 Female, age 72, unknown 13.8
2850 Male, age 76, both hemispheres 12.7
1831 Male, age 72, unknown 12.5
Periaquaductal grey, lateral
nTPM: 14.4
2053 Male, age 18, unknown 16.2
2272 Male, age 74, both hemispheres 13.7
2140 Male, age 76, both hemispheres 13.2
Pretectal area
nTPM: 14.5
1815 Male, age 53, unknown 17.6
1944 Female, age 72, unknown 16.7
1817 Female, age 42, unknown 15.8
2224 Female, age 72, unknown 15.6
2007 Male, age 72, unknown 15.1
1816 Male, age 51, unknown 14.6
2273 Male, age 74, both hemispheres 14.1
2667 Female, age 75, unknown 13.9
2316 Male, age 76, right hemisphere 13.1
2825 Male, age 18, unknown 11.6
2407 Male, age 75, both hemispheres 11.1
Red nucleus
nTPM: 13.8
1821 Female, age 72, unknown 18.7
2823 Male, age 76, right hemisphere 16.8
1954 Female, age 42, unknown 16.4
1865 Male, age 51, unknown 15.0
2503 Female, age 72, unknown 14.2
1904 Male, age 53, unknown 13.5
2584 Male, age 75, left hemisphere 12.9
2785 Male, age 18, unknown 12.8
2227 Male, age 72, unknown 12.0
2769 Male, age 72, unknown 11.7
2725 Female, age 75, unknown 11.2
2588 Male, age 74, left hemisphere 10.6
Substantia nigra
nTPM: 15.7
1851 Male, age 51, unknown 18.9
2241 Male, age 72, unknown 18.8
2409 Female, age 72, unknown 18.2
1916 Female, age 42, unknown 17.5
1889 Female, age 72, unknown 16.3
1941 Male, age 53, unknown 15.4
2590 Female, age 75, unknown 14.2
2699 Male, age 18, unknown 14.1
2583 Male, age 75, right hemisphere 12.2
2665 Male, age 74, both hemispheres 11.9
Superior colliculus
nTPM: 12.6
1895 Male, age 76, right hemisphere 15.8
1995 Male, age 72, unknown 14.8
2087 Female, age 72, unknown 14.3
2668 Female, age 75, unknown 14.0
1913 Female, age 42, unknown 12.8
2664 Male, age 75, both hemispheres 11.9
2587 Male, age 74, left hemisphere 11.8
1839 Male, age 51, unknown 10.8
2261 Male, age 18, unknown 10.5
1796 Male, age 53, unknown 9.7
Ventral tegmental area
nTPM: 14.4
1915 Female, age 42, unknown 16.9
1942 Male, age 51, unknown 15.3
2218 Male, age 76, both hemispheres 14.3
2223 Female, age 72, unknown 14.1
2410 Female, age 72, unknown 13.4
2021 Male, age 53, unknown 12.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.9
Samples: 139

Max nTPM: 31.3
Min nTPM: 11.4
Std nTPM: 3.5
Median nTPM: 17.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 31.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 29.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 28.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 26.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 24.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 24.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 23.8
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 23.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 22.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 22.5
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 22.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 105.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 105.8
FF:10158-103A5 76 years, female 105.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.6
Samples: 4

Max nTPM: 11.1
Min nTPM: 5.5
Sample A Female 11.1
Sample B Female 6.9
Sample C Male 7.0
Sample D Male 5.5
Midbrain
nTPM: 8.4
Samples: 4

Max nTPM: 9.3
Min nTPM: 7.5
Sample A Female 7.8
Sample B Female 7.5
Sample C Male 8.8
Sample D Male 9.3
Periaqueductal gray
nTPM: 5.4
Samples: 3

Max nTPM: 5.6
Min nTPM: 5.3
Sample B Female 5.4
Sample C Male 5.6
Sample D Male 5.3
Superior colliculi
nTPM: 9.4
Samples: 4

Max nTPM: 12.1
Min nTPM: 6.5
Sample A Female 12.1
Sample B Female 6.5
Sample C Male 10.8
Sample D Male 8.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 55.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 58.9
Min nTPM: 51.0
Sample A Male 58.9
Sample B Male 55.2
Sample C Female 57.0
Sample D Female 51.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
633690 Antisense, RP_040907_02_B11, Mouse strain C57BL/6J (56 days, male) 0.0
73512515 Antisense, RP_050816_01_H04, Mouse strain C57BL/6J (56 days, male) 0.0

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