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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUMB is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
51.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
45.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
42.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
34.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
32.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
32.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
30.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
30.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
30.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
29.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
29.1
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
28.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
28.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
28.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
28.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
28.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
27.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
26.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
26.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
25.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
25.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
25.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
25.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
25.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
24.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
24.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
24.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
24.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
24.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
24.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
24.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
23.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
23.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
23.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
23.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
23.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
22.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
22.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
22.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
22.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
22.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
21.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
21.6
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
21.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
21.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
21.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
21.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
20.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
20.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
20.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
20.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
20.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
20.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
20.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
20.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
20.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
20.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
20.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
20.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
20.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
19.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
19.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
19.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
19.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
19.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
19.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
19.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
19.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
19.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
18.8
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
18.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
18.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
18.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
18.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
18.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
18.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
18.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
17.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
17.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
17.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
17.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
17.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
17.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
17.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
17.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
16.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
16.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
16.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
16.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
16.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
16.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
16.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
16.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
16.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
15.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
15.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
15.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
15.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
15.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
15.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
15.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
15.1
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
15.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
14.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
14.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
14.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
14.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
14.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
14.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
14.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
13.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
13.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
13.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
13.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
13.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
13.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
13.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
13.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
13.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.1
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
13.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
13.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
12.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
12.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
12.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
12.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
12.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
12.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
12.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
12.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
12.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
11.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
11.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
11.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
11.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
11.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
11.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
11.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
11.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
11.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
11.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
10.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
10.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
9.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
9.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
9.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.2
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
9.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
8.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.8
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
8.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
8.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
8.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
8.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.2
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
8.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
8.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
7.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
7.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
7.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
7.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
6.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
6.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
6.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
6.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
6.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
5.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
5.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
2.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUMB is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.4
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
66.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
63.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
56.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
50.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
40.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
40.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
38.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
36.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
35.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
33.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
33.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
33.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
32.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
32.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
32.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
32.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
32.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
31.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
31.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
31.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
31.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
30.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
30.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
29.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
29.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
29.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
29.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
28.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
28.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
28.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
28.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
28.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
28.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
27.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
27.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
27.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
27.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
27.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
27.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
27.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
27.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
27.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
26.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
26.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
26.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
26.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
26.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
26.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
26.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
26.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
26.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
26.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
25.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
25.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
25.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
25.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
25.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
25.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
25.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
25.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
24.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
24.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
24.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
24.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
24.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
24.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
24.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
24.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
24.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
24.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
24.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
23.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
23.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
23.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.6
DO23550
0 years, male, NA, stage:1, alive, 990 days
23.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
23.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
23.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
23.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
23.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
23.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
22.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
22.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
22.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
22.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
22.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
22.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
22.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
22.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
22.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
22.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
21.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
21.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
21.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
21.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
21.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
21.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
21.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
21.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
21.5
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
21.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
21.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
21.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
20.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
20.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
20.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
20.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
20.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
20.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
20.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
20.3
DO48727
0 years, female, NA, stage:2, dead, 390 days
20.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
20.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
20.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
20.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
20.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
20.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
19.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
19.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
19.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
19.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
19.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
19.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
19.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
19.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
19.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
18.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
18.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
18.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
18.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
18.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
18.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
18.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
17.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
17.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
17.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
17.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
16.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
16.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
16.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
16.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
16.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
16.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
16.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
16.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
15.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
15.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
15.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
14.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
14.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
14.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
14.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
13.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
13.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
13.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
13.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
13.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
13.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
12.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
12.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
12.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
11.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
11.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
11.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
10.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
497
Tumor
0.7
967
Tumor
0.6
445
Tumor
0.5
484
Normal
0.5
523
Tumor
0.5
745
Tumor
0.5
533
Tumor
0.5
952
Normal
0.5
944
Normal
0.4
817
Tumor
0.4
277
Tumor
0.4
878
Normal
0.4
493
Tumor
0.4
882
Normal
0.4
744
Normal
0.4
884
Normal
0.4
924
Normal
0.4
737
Tumor
0.4
938
Normal
0.4
955
Tumor
0.3
527
Tumor
0.3
135
Tumor
0.3
554
Normal
0.3
228
Normal
0.3
918
Normal
0.3
813
Tumor
0.3
968
Normal
0.3
778
Normal
0.3
697
Tumor
0.3
546
Normal
0.3
777
Tumor
0.3
472
Normal
0.3
922
Normal
0.3
131
Tumor
0.3
975
Tumor
0.3
473
Tumor
0.3
746
Normal
0.3
518
Normal
0.3
363
Tumor
0.3
357
Tumor
0.3
448
Normal
0.3
488
Normal
0.3
513
Tumor
0.3
917
Tumor
0.3
914
Normal
0.3
412
Normal
0.3
1027
Tumor
0.3
498
Normal
0.3
474
Normal
0.3
286
Normal
0.2
471
Tumor
0.2
966
Normal
0.2
956
Normal
0.2
698
Normal
0.2
926
Normal
0.2
431
Tumor
0.2
515
Tumor
0.2
416
Normal
0.2
492
Normal
0.2
494
Normal
0.2
695
Tumor
0.2
958
Normal
0.2
858
Normal
0.2
376
Normal
0.2
538
Normal
0.2
716
Normal
0.2
461
Tumor
0.2
328
Normal
0.2
284
Normal
0.2
984
Normal
0.2
1044
Normal
0.2
553
Tumor
0.2
696
Normal
0.2
723
Tumor
0.2
1046
Normal
0.2
824
Normal
0.2
976
Normal
0.2
785
Tumor
0.2
516
Normal
0.2
298
Normal
0.2
738
Normal
0.2
867
Tumor
0.2
1043
Tumor
0.2
857
Tumor
0.2
462
Normal
0.2
874
Normal
0.2
816
Normal
0.2
881
Tumor
0.2
862
Normal
0.2
212
Normal
0.2
728
Normal
0.2
536
Normal
0.2
297
Tumor
0.2
864
Normal
0.2
1026
Normal
0.2
627
Tumor
0.2
866
Normal
0.2
463
Tumor
0.2
863
Tumor
0.2
364
Normal
0.2
385
Tumor
0.2
267
Tumor
0.2
1028
Normal
0.2
727
Tumor
0.2
742
Normal
0.2
342
Normal
0.1
964
Normal
0.1
982
Normal
0.1
557
Tumor
0.1
618
Normal
0.1
912
Normal
0.1
868
Normal
0.1
715
Tumor
0.1
1045
Tumor
0.1
354
Normal
0.1
366
Normal
0.1
187
Tumor
0.1
526
Normal
0.1
641
Tumor
0.1
137
Tumor
0.1
534
Normal
0.1
954
Normal
0.1
224
Normal
0.1
823
Tumor
0.1
393
Tumor
0.1
642
Normal
0.1
957
Tumor
0.1
411
Tumor
0.1
261
Tumor
0.1
714
Normal
0.1
148
Normal
0.1
524
Normal
0.1
636
Normal
0.1
481
Tumor
0.1
482
Normal
0.1
358
Normal
0.1
141
Tumor
0.1
353
Tumor
0.1
313
Tumor
0.1
456
Normal
0.1
1016
Normal
0.1
344
Normal
0.1
953
Tumor
0.1
1022
Normal
0.1
981
Tumor
0.1
1041
Tumor
0.1
713
Tumor
0.1
312
Normal
0.1
415
Tumor
0.1
913
Tumor
0.1
365
Tumor
0.1
865
Tumor
0.1
434
Normal
0.1
477
Tumor
0.1
662
Normal
0.1
227
Tumor
0.1
672
Normal
0.1
446
Normal
0.1
452
Normal
0.1
721
Tumor
0.1
436
Normal
0.1
528
Normal
0.1
1014
Normal
0.1
222
Normal
0.1
145
Tumor
0.1
943
Tumor
0.1
648
Normal
0.1
362
Normal
0.1
937
Tumor
0.1
356
Normal
0.1
756
Normal
0.1
128
Normal
0.1
851
Tumor
0.1
447
Tumor
0.1
873
Tumor
0.1
861
Tumor
0.1
114
Normal
0.1
628
Normal
0.1
666
Normal
0.1
663
Tumor
0.1
258
Normal
0.1
468
Normal
0.1
814
Normal
0.0
278
Normal
0.0
963
Tumor
0.0
311
Tumor
0.0
617
Tumor
0.0
124
Normal
0.0
664
Normal
0.0
466
Normal
0.0
1042
Normal
0.0
196
Normal
0.0
615
Tumor
0.0
142
Normal
0.0
916
Normal
0.0
686
Normal
0.0
111
Normal
0.0
343
Tumor
0.0
852
Normal
0.0
136
Normal
0.0
426
Normal
0.0
388
Normal
0.0
132
Normal
0.0
464
Normal
0.0
568
Normal
0.0
186
Normal
0.0
355
Tumor
0.0
478
Normal
0.0
396
Normal
0.0
272
Normal
0.0
423
Tumor
0.0
921
Tumor
0.0
392
Normal
0.0
138
Normal
0.0
444
Normal
0.0
425
Tumor
0.0
232
Normal
0.0
616
Normal
0.0
262
Normal
0.0
368
Normal
0.0
545
Tumor
0.0
422
Normal
0.0
421
Tumor
0.0
755
Tumor
0.0
218
Normal
0.0
685
Tumor
0.0
352
Normal
0.0
214
Normal
0.0
558
Normal
0.0
283
Tumor
0.0
432
Normal
0.0
455
Tumor
0.0
146
Normal
0.0
257
Tumor
0.0
386
Normal
0.0
172
Normal
0.0
332
Normal
0.0
574
Normal
0.0
786
Normal
0.0
327
Tumor
0.0
572
Normal
-0.1
1032
Normal
-0.1
722
Normal
-0.1
951
Tumor
-0.1
977
Tumor
-0.1
818
Normal
-0.1
271
Tumor
-0.1
394
Normal
-0.1
213
Tumor
-0.1
433
Tumor
-0.1
314
Normal
-0.1
285
Tumor
-0.1
467
Tumor
-0.1
564
Normal
-0.1
567
Tumor
-0.1
223
Tumor
-0.1
221
Tumor
-0.1
815
Tumor
-0.1
383
Tumor
-0.1
883
Tumor
-0.1
185
Tumor
-0.1
341
Tumor
-0.1
162
Normal
-0.1
978
Normal
-0.1
525
Tumor
-0.1
191
Tumor
-0.1
487
Tumor
-0.1
635
Tumor
-0.1
428
Normal
-0.1
126
Normal
-0.1
195
Tumor
-0.1
188
Normal
-0.1
535
Tumor
-0.1
435
Tumor
-0.2
192
Normal
-0.2
268
Normal
-0.2
161
Tumor
-0.2
112
Tumor
-0.2
375
Tumor
-0.2
414
Normal
-0.2
424
Normal
-0.2
743
Tumor
-0.2
465
Tumor
-0.2
661
Tumor
-0.2
231
Tumor
-0.2
563
Tumor
-0.2
217
Tumor
-0.2
1031
Tumor
-0.2
491
Tumor
-0.2
443
Tumor
-0.2
361
Tumor
-0.2
395
Tumor
-0.2
514
Normal
-0.2
965
Tumor
-0.2
427
Tumor
-0.2
384
Normal
-0.2
923
Tumor
-0.2
647
Tumor
-0.2
147
Tumor
-0.2
1015
Tumor
-0.2
331
Tumor
-0.3
741
Tumor
-0.3
571
Tumor
-0.3
483
Tumor
-0.3
171
Tumor
-0.3
915
Tumor
-0.3
911
Tumor
-0.3
211
Tumor
-0.3
387
Tumor
-0.3
125
Tumor
-0.3
537
Tumor
-0.3
983
Tumor
-0.3
925
Tumor
-0.3
517
Tumor
-0.3
113
Tumor
-0.3
665
Tumor
-0.3
573
Tumor
-0.3
877
Tumor
-0.4
1021
Tumor
-0.4
451
Tumor
-0.4
127
Tumor
-0.4
671
Tumor
-0.4
413
Tumor
-0.4
1025
Tumor
-0.4
391
Tumor
-0.5
724
Normal
-0.5
1013
Tumor
-0.6
123
Tumor
-0.6
367
Tumor
-0.7
351
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
