MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.6 nTPM
HPA Brain:67.1 nTPM
GTEx:44.6 nTPM
FANTOM5:226.2 Scaled Tags Per Million
Pig:52.9 nTPM
Mouse:59.7 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 54.3
2411 Female, age 72, unknown 77.5
1870 Female, age 42, unknown 75.9
1833 Male, age 53, unknown 63.4
1830 Male, age 51, unknown 59.1
2019 Male, age 18, unknown 54.7
2828 Female, age 72, unknown 54.2
2219 Male, age 76, both hemispheres 41.8
1827 Male, age 72, unknown 41.5
2586 Male, age 75, left hemisphere 39.0
2666 Male, age 74, left hemisphere 36.1
Dorsal raphe nucleus
nTPM: 50.8
1828 Male, age 53, unknown 61.5
2750 Male, age 76, both hemispheres 59.2
2016 Female, age 72, unknown 49.1
2047 Male, age 72, unknown 43.0
2298 Female, age 72, unknown 41.3
Inferior colliculus
nTPM: 47.6
2849 Male, age 72, unknown 57.7
1848 Female, age 42, unknown 50.9
1890 Male, age 53, unknown 48.2
2097 Female, age 72, unknown 33.7
Median raphe nucleus
nTPM: 54.5
2220 Male, age 76, midline 54.5
Periaquaductal grey, anterior
nTPM: 41.8
2502 Female, age 75, unknown 48.8
1947 Male, age 18, unknown 39.5
1795 Male, age 51, unknown 37.0
Periaquaductal grey, dorsal
nTPM: 47.4
2850 Male, age 76, both hemispheres 63.1
2464 Female, age 72, unknown 49.0
1831 Male, age 72, unknown 41.3
1840 Male, age 53, unknown 36.4
Periaquaductal grey, lateral
nTPM: 43.0
2053 Male, age 18, unknown 47.5
2140 Male, age 76, both hemispheres 46.9
2272 Male, age 74, both hemispheres 34.7
Pretectal area
nTPM: 45.2
1815 Male, age 53, unknown 54.3
2825 Male, age 18, unknown 54.2
1817 Female, age 42, unknown 53.9
2273 Male, age 74, both hemispheres 48.1
2667 Female, age 75, unknown 47.5
2407 Male, age 75, both hemispheres 44.4
2316 Male, age 76, right hemisphere 44.2
2007 Male, age 72, unknown 43.6
2224 Female, age 72, unknown 39.2
1816 Male, age 51, unknown 36.7
1944 Female, age 72, unknown 31.2
Red nucleus
nTPM: 67.1
1821 Female, age 72, unknown 96.5
1865 Male, age 51, unknown 81.3
2503 Female, age 72, unknown 77.2
1904 Male, age 53, unknown 74.6
1954 Female, age 42, unknown 72.3
2769 Male, age 72, unknown 69.8
2227 Male, age 72, unknown 65.7
2823 Male, age 76, right hemisphere 59.6
2725 Female, age 75, unknown 58.9
2588 Male, age 74, left hemisphere 58.2
2785 Male, age 18, unknown 55.4
2584 Male, age 75, left hemisphere 35.6
Substantia nigra
nTPM: 51.1
2699 Male, age 18, unknown 59.1
2409 Female, age 72, unknown 58.8
1851 Male, age 51, unknown 57.0
2241 Male, age 72, unknown 54.3
1889 Female, age 72, unknown 50.1
2590 Female, age 75, unknown 49.8
1916 Female, age 42, unknown 48.9
2665 Male, age 74, both hemispheres 48.7
2583 Male, age 75, right hemisphere 46.1
1941 Male, age 53, unknown 38.1
Superior colliculus
nTPM: 46.5
1913 Female, age 42, unknown 63.9
2587 Male, age 74, left hemisphere 54.8
1895 Male, age 76, right hemisphere 54.4
1995 Male, age 72, unknown 54.4
1839 Male, age 51, unknown 51.8
2668 Female, age 75, unknown 41.1
1796 Male, age 53, unknown 40.8
2087 Female, age 72, unknown 37.8
2261 Male, age 18, unknown 34.2
2664 Male, age 75, both hemispheres 32.2
Ventral tegmental area
nTPM: 54.0
2410 Female, age 72, unknown 66.8
1915 Female, age 42, unknown 58.5
2223 Female, age 72, unknown 56.1
2218 Male, age 76, both hemispheres 54.5
2021 Male, age 53, unknown 47.5
1942 Male, age 51, unknown 40.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 44.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 44.6
Samples: 139

Max nTPM: 95.6
Min nTPM: 18.2
Std nTPM: 12.5
Median nTPM: 42.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 95.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 90.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 82.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 82.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 73.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 72.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 71.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 70.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 65.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 64.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 64.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 226.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 226.2
FF:10158-103A5 76 years, female 226.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 52.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 50.6
Samples: 4

Max nTPM: 55.5
Min nTPM: 46.7
Sample A Female 55.5
Sample B Female 46.7
Sample C Male 48.8
Sample D Male 51.4
Midbrain
nTPM: 52.9
Samples: 4

Max nTPM: 62.4
Min nTPM: 45.3
Sample A Female 62.4
Sample B Female 56.8
Sample C Male 47.0
Sample D Male 45.3
Periaqueductal gray
nTPM: 48.7
Samples: 3

Max nTPM: 51.0
Min nTPM: 44.3
Sample B Female 51.0
Sample C Male 50.9
Sample D Male 44.3
Superior colliculi
nTPM: 49.4
Samples: 4

Max nTPM: 52.5
Min nTPM: 46.7
Sample A Female 52.5
Sample B Female 47.0
Sample C Male 51.3
Sample D Male 46.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 59.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.7
Samples: 4

Max nTPM: 63.1
Min nTPM: 57.0
Sample A Male 57.0
Sample B Male 58.1
Sample C Female 63.1
Sample D Female 60.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
68269055 Antisense, RP_041208_01_G06, Mouse strain C57BL/6J (56 days, male) 0.4

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